Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 N 1.46497 * 109.47507 * 119.99918 * 2 1 3 5 5 C 1.34956 * 126.03909 * 252.70500 * 4 2 1 6 6 C 1.35314 * 107.74611 * 180.14452 * 5 4 2 7 7 S 1.76195 * 126.03834 * 179.86915 * 6 5 4 8 8 O 1.42104 * 106.39813 * 118.12273 * 7 6 5 9 9 O 1.42096 * 106.40597 * 345.20612 * 7 6 5 10 10 N 1.65597 * 107.22139 * 231.65936 * 7 6 5 11 11 C 1.36940 * 119.99507 * 96.51893 * 10 7 6 12 12 H 1.08005 * 119.99577 * 144.89676 * 11 10 7 13 13 C 1.38811 * 120.00214 * 324.89287 * 11 10 7 14 14 N 1.31611 * 120.00205 * 348.31588 * 13 11 10 15 15 Si 1.86804 * 119.99702 * 168.31055 * 13 11 10 16 16 H 1.48501 * 109.47290 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46945 * 120.00333 * 15 13 11 18 18 H 1.48498 * 109.46910 * 240.00119 * 15 13 11 19 19 C 1.46495 * 120.00194 * 276.52596 * 10 7 6 20 20 C 1.50703 * 109.46906 * 242.67721 * 19 10 7 21 21 C 1.38234 * 119.99571 * 86.55587 * 20 19 10 22 22 C 1.38244 * 119.99673 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.00362 * 0.07542 * 22 21 20 24 24 C 1.38238 * 119.99616 * 359.89873 * 23 22 21 25 25 C 1.38228 * 120.00248 * 266.52942 * 20 19 10 26 26 C 1.39869 * 107.91886 * 359.61080 * 6 5 4 27 27 N 1.30835 * 108.20317 * 0.24080 * 26 6 5 28 28 H 1.08998 * 109.46856 * 299.99481 * 1 2 3 29 29 H 1.08999 * 109.47495 * 59.99738 * 1 2 3 30 30 H 1.09004 * 109.46530 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47321 * 240.00263 * 2 1 3 32 32 H 1.09001 * 109.47061 * 304.11728 * 3 2 1 33 33 H 1.08999 * 109.47610 * 64.11917 * 3 2 1 34 34 H 1.09006 * 109.47192 * 184.12132 * 3 2 1 35 35 H 1.07999 * 126.12217 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00151 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47489 * 122.68307 * 19 10 7 38 38 H 1.08997 * 109.47471 * 2.67962 * 19 10 7 39 39 H 1.07995 * 120.00462 * 359.70076 * 21 20 19 40 40 H 1.08007 * 119.99682 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00263 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.99705 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00195 * 0.02562 * 25 20 19 44 44 H 1.08005 * 125.89877 * 180.26468 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.5890 -0.1084 2.2717 6 6 2.9012 -1.0866 3.1530 7 16 3.6706 -0.8613 4.7220 8 8 2.7440 -1.3269 5.6937 9 8 4.2014 0.4568 4.7232 10 7 4.9683 -1.8882 4.7837 11 6 6.2207 -1.4280 4.4755 12 1 7.0818 -1.8122 5.0021 13 6 6.3834 -0.4677 3.4864 14 7 5.3797 -0.1665 2.6901 15 14 8.0270 0.3970 3.2856 16 1 8.9844 -0.1184 4.2971 17 1 8.5594 0.1381 1.9236 18 1 7.8440 1.8583 3.4760 19 6 4.7765 -3.2888 5.1677 20 6 5.5352 -3.5695 6.4392 21 6 4.9454 -3.3227 7.6647 22 6 5.6412 -3.5806 8.8311 23 6 6.9273 -4.0838 8.7719 24 6 7.5169 -4.3311 7.5462 25 6 6.8207 -4.0742 6.3799 26 6 2.4999 -2.3074 2.6009 27 7 1.9706 -2.0712 1.4279 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6176 1.9772 -0.8508 33 1 1.7381 1.9347 0.9246 34 1 3.1275 1.4435 -0.0739 35 1 2.7672 0.9485 2.4039 36 1 5.4936 0.5042 1.9987 37 1 5.1462 -3.9373 4.3734 38 1 3.7154 -3.4796 5.3281 39 1 3.9427 -2.9242 7.7110 40 1 5.1805 -3.3874 9.7887 41 1 7.4706 -4.2857 9.6830 42 1 8.5215 -4.7246 7.5000 43 1 7.2816 -4.2670 5.4224 44 1 2.6079 -3.2775 3.0632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096427767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = 43.639185 kcal Electronic energy + Delta-G solvation = -29643.918278 eV Core-core repulsion = 25690.739038 eV Total energy + Delta-G solvation = -3953.179240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.54362 -38.73266 -35.76126 -35.54251 -35.32325 -34.19043 -32.01895 -30.35125 -30.08256 -29.77837 -29.34762 -27.28976 -25.84808 -23.57180 -22.93591 -21.99515 -20.86242 -20.58064 -19.65400 -18.56454 -17.64575 -16.60193 -16.15069 -15.64497 -15.26485 -15.02865 -14.71455 -14.54961 -14.35027 -14.23422 -13.93312 -13.55868 -13.20148 -12.90710 -12.82643 -12.77498 -12.59813 -12.27584 -12.10488 -11.91564 -11.62014 -11.49457 -11.41437 -11.26660 -11.23260 -11.01960 -10.68841 -10.64359 -10.56576 -10.46588 -10.33374 -10.23751 -9.73194 -9.50391 -8.93638 -8.79560 -8.37378 -8.21640 -8.16026 -7.67124 -6.19991 -3.84022 1.80609 1.94504 2.17654 2.53047 2.96915 3.26546 3.30979 3.39458 3.41338 4.23625 4.38772 4.58166 4.80911 4.85330 5.04373 5.14739 5.23569 5.35213 5.38381 5.40879 5.42145 5.50832 5.51841 5.59964 5.66013 5.71789 5.79377 5.88538 5.98817 6.05785 6.08063 6.12095 6.18694 6.36803 6.42371 6.55486 6.62648 6.70408 6.98539 6.99935 7.18291 7.23589 7.39071 7.56923 7.58829 7.71567 8.21085 8.51424 9.13724 9.55603 10.87022 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004300 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.468274 B = 6509.729915 C = 7684.056185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 C -0.168 4.168 4 N -0.372 5.372 5 C 0.197 3.803 6 C -0.728 4.728 7 S 2.728 3.272 8 O -1.023 7.023 9 O -0.955 6.955 10 N -0.854 5.854 11 C -0.297 4.297 12 H 0.086 0.914 13 C 0.043 3.957 14 N -0.882 5.882 15 Si 0.927 3.073 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.281 1.281 19 C 0.159 3.841 20 C -0.071 4.071 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.098 4.098 26 C 0.117 3.883 27 N -0.314 5.314 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.174 0.826 36 H 0.269 0.731 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -2.304 -1.450 5.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 C -0.226 4.226 4 N -0.153 5.153 5 C 0.047 3.953 6 C -0.825 4.825 7 S 2.820 3.180 8 O -1.013 7.013 9 O -0.945 6.945 10 N -0.684 5.684 11 C -0.428 4.428 12 H 0.104 0.896 13 C -0.162 4.162 14 N -0.524 5.524 15 Si 0.756 3.244 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.207 1.207 19 C 0.031 3.969 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.117 4.117 26 C -0.072 4.072 27 N -0.134 5.134 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.191 0.809 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.231 -2.044 -2.173 6.022 hybrid contribution 1.351 0.589 -0.330 1.510 sum -3.880 -1.454 -2.503 4.841 Atomic orbital electron populations 1.22191 0.94040 1.03230 1.02521 1.21154 0.94709 0.92745 0.86044 1.22199 1.03037 0.93882 1.03470 1.49006 1.46863 1.04945 1.14475 1.21842 0.89652 0.99019 0.84791 1.31385 1.25273 0.98000 1.27862 1.00918 0.71786 0.73395 0.71948 1.93432 1.65801 1.83201 1.58865 1.93414 1.77558 1.36975 1.86541 1.52793 1.20000 1.15073 1.80539 1.18849 0.84176 1.23176 1.16639 0.89585 1.25217 0.98771 0.98514 0.93703 1.69682 1.31292 1.32628 1.18756 0.85852 0.81661 0.79588 0.77312 1.19737 1.21504 1.20727 1.20076 0.98009 0.86079 0.92698 1.20353 0.95010 0.96304 0.95670 1.21242 1.00646 0.98916 0.92059 1.21057 0.95059 1.00530 0.98002 1.20993 0.95605 1.01162 0.97331 1.21053 0.99482 1.01461 0.92798 1.21083 0.94082 0.98368 0.98146 1.23134 0.94647 0.97430 0.91975 1.77087 1.26108 0.91755 1.18454 0.92065 0.91033 0.91484 0.89021 0.90250 0.91291 0.90783 0.80877 0.91994 0.91664 0.90837 0.85603 0.86753 0.87031 0.86844 0.85990 0.80675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.52 37.16 0.35 -1.45 16 2 C 0.16 2.07 4.06 -67.93 -0.28 1.80 16 3 C -0.17 -1.89 8.40 37.16 0.31 -1.57 16 4 N -0.37 -6.71 3.61 -54.86 -0.20 -6.91 16 5 C 0.20 3.95 8.83 -17.22 -0.15 3.79 16 6 C -0.73 -15.92 4.67 -40.01 -0.19 -16.11 16 7 S 2.73 65.64 5.01 -107.50 -0.54 65.10 16 8 O -1.02 -25.00 16.84 -57.17 -0.96 -25.96 16 9 O -0.96 -25.77 14.53 -57.17 -0.83 -26.60 16 10 N -0.85 -19.90 2.98 -61.09 -0.18 -20.08 16 11 C -0.30 -7.45 8.96 -15.06 -0.13 -7.58 16 12 H 0.09 2.13 6.81 -52.48 -0.36 1.78 16 13 C 0.04 1.09 4.41 -17.43 -0.08 1.01 16 14 N -0.88 -22.47 7.90 55.49 0.44 -22.03 16 15 Si 0.93 21.09 29.57 -169.99 -5.03 16.07 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.16 3.11 5.87 -5.19 -0.03 3.08 16 20 C -0.07 -1.34 4.96 -104.63 -0.52 -1.85 16 21 C -0.11 -1.99 9.72 -39.58 -0.38 -2.38 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 24 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 25 C -0.10 -1.69 8.75 -39.58 -0.35 -2.04 16 26 C 0.12 2.36 11.98 -17.37 -0.21 2.15 16 27 N -0.31 -6.22 12.57 30.63 0.39 -5.84 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.78 7.14 -51.93 -0.37 0.41 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.17 3.27 6.97 -52.49 -0.37 2.91 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 38 H 0.07 1.34 7.11 -51.93 -0.37 0.97 16 39 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.18 3.04 8.06 -52.48 -0.42 2.62 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -32.01 376.19 -10.18 -42.19 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.09 Total: 6.71 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.84 Total: -28.31 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.44 Total: -54.87 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -1.79 Total: -52.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 65.64 SS G_CDS: -0.54 Total: 65.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.01 -10.18 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.831 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds