Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50710 * 109.47073 * 2 1 4 4 N 1.30128 * 121.06096 * 89.97183 * 3 2 1 5 5 S 1.69949 * 105.76439 * 180.02562 * 4 3 2 6 6 C 1.72296 * 94.57186 * 0.02562 * 5 4 3 7 7 N 1.38319 * 127.50267 * 180.02562 * 6 5 4 8 8 C 1.44317 * 111.03978 * 231.83920 * 7 6 5 9 9 C 1.54257 * 108.62039 * 219.91753 * 8 7 6 10 10 C 1.46139 * 111.83238 * 281.29154 * 9 8 7 11 11 N 1.48096 * 112.19915 * 60.90494 * 10 9 8 12 12 C 1.46896 * 111.00003 * 156.47105 * 11 10 9 13 13 C 1.53002 * 109.47380 * 74.96167 * 12 11 10 14 14 H 1.09003 * 109.46825 * 53.57310 * 13 12 11 15 15 C 1.47197 * 109.46959 * 293.57732 * 13 12 11 16 16 N 9.14343 * 115.88676 * 132.28921 * 3 1 2 17 17 C 1.52996 * 109.47247 * 173.57753 * 13 12 11 18 18 C 1.50700 * 109.47172 * 185.00154 * 17 13 12 19 19 H 1.08001 * 120.00021 * 359.97438 * 18 17 13 20 20 C 1.37878 * 120.00291 * 180.02562 * 18 17 13 21 21 N 1.31515 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99843 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46945 * 90.00046 * 22 20 18 24 24 H 1.48498 * 109.47108 * 210.00374 * 22 20 18 25 25 H 1.48503 * 109.47051 * 330.00514 * 22 20 18 26 26 C 1.44263 * 109.97005 * 279.69670 * 11 10 9 27 27 C 1.48199 * 110.99775 * 0.02562 * 7 6 5 28 28 N 1.31286 * 121.06266 * 270.27368 * 3 2 1 29 29 H 1.08996 * 109.46733 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46747 * 299.99893 * 1 2 3 31 31 H 1.08995 * 109.46656 * 60.00166 * 1 2 3 32 32 H 1.08999 * 109.47418 * 240.00447 * 2 1 3 33 33 H 1.08996 * 109.47316 * 119.99475 * 2 1 3 34 34 H 1.09005 * 109.68165 * 100.14819 * 8 7 6 35 35 H 1.08995 * 109.56185 * 339.62524 * 8 7 6 36 36 H 1.09002 * 108.99384 * 160.70905 * 9 8 7 37 37 H 1.08998 * 108.99297 * 41.87492 * 9 8 7 38 38 H 1.09002 * 108.93344 * 181.60375 * 10 9 8 39 39 H 1.09004 * 108.93342 * 300.29049 * 10 9 8 40 40 H 1.08996 * 109.47290 * 194.96112 * 12 11 10 41 41 H 1.08998 * 109.47511 * 314.96103 * 12 11 10 42 42 H 1.09000 * 109.47004 * 304.99953 * 17 13 12 43 43 H 1.09000 * 109.47252 * 64.99938 * 17 13 12 44 44 H 0.96998 * 119.99643 * 180.02562 * 21 20 18 45 45 H 1.09008 * 108.86587 * 214.70440 * 26 11 10 46 46 H 1.08995 * 108.86793 * 333.22109 * 26 11 10 47 47 H 1.08995 * 108.82471 * 70.83244 * 27 7 6 48 48 H 1.08997 * 108.73555 * 312.46506 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2557 2.0541 1.1147 5 16 2.8016 3.5998 0.6663 6 6 2.6945 3.2976 -1.0265 7 7 3.0017 4.1663 -2.0581 8 6 1.9113 4.2598 -2.9988 9 6 2.4948 4.3064 -4.4261 10 6 3.0024 5.6348 -4.7626 11 7 4.0945 6.0621 -3.8581 12 6 4.9436 7.0746 -4.4998 13 6 4.2097 8.4169 -4.5207 14 1 3.8857 8.6695 -3.5110 15 6 3.0355 8.3204 -5.4031 16 7 2.1326 8.2446 -6.0852 17 6 5.1510 9.5048 -5.0415 18 6 4.4700 10.8458 -4.9469 19 1 3.4661 10.9152 -4.5549 20 6 5.1283 11.9841 -5.3617 21 7 4.5341 13.1545 -5.2786 22 14 6.8645 11.8641 -6.0403 23 1 6.8084 11.6606 -7.5102 24 1 7.6004 13.1189 -5.7419 25 1 7.5648 10.7172 -5.4083 26 6 3.5436 6.5583 -2.6206 27 6 3.4645 5.4724 -1.5324 28 7 2.2531 2.0614 -1.1246 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.3386 5.1674 -2.8080 35 1 1.2650 3.3882 -2.8961 36 1 1.7149 4.0339 -5.1372 37 1 3.3094 3.5860 -4.5000 38 1 3.3759 5.6218 -5.7865 39 1 2.1858 6.3535 -4.6933 40 1 5.8730 7.1773 -3.9397 41 1 5.1673 6.7669 -5.5213 42 1 6.0607 9.5161 -4.4411 43 1 5.4046 9.2986 -6.0813 44 1 4.9971 13.9552 -5.5708 45 1 4.1686 7.3749 -2.2589 46 1 2.5403 6.9400 -2.8094 47 1 4.4528 5.3438 -1.0914 48 1 2.7737 5.8020 -0.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096435856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = 99.810276 kcal Electronic energy + Delta-G solvation = -28461.532185 eV Core-core repulsion = 24678.914553 eV Total energy + Delta-G solvation = -3782.617633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87785 -39.97218 -37.87910 -35.62398 -34.24176 -33.49277 -33.09626 -31.89063 -31.42195 -29.04112 -27.12702 -26.22584 -25.61317 -23.77211 -22.97424 -21.66802 -20.97792 -20.54008 -19.78329 -19.08652 -17.43478 -16.97383 -16.91842 -16.27412 -15.78365 -15.60161 -15.33089 -14.88882 -14.63432 -14.41958 -14.24672 -14.05802 -13.83610 -13.35706 -13.21145 -12.91057 -12.79240 -12.55128 -12.45352 -12.32489 -12.15558 -11.88577 -11.81834 -11.66659 -11.51671 -11.46088 -11.40317 -11.28725 -11.12006 -10.99915 -10.86968 -10.61465 -10.39508 -10.25961 -9.98738 -9.93531 -9.59399 -9.45685 -8.70151 -8.63715 -8.28889 -6.19355 -4.21055 0.27580 0.81270 1.48743 2.32919 2.67652 3.20799 3.28250 3.29283 3.36544 3.39421 3.68508 3.96631 4.30524 4.48577 4.50392 4.58314 4.65068 4.70561 4.72798 4.86763 4.91224 4.95173 5.11544 5.15227 5.22586 5.24943 5.28109 5.35131 5.40288 5.46858 5.50098 5.56711 5.61293 5.66912 5.69002 5.80528 5.83709 5.89442 6.07959 6.12310 6.15488 6.25160 6.42690 6.82696 6.91922 6.99206 7.02322 7.43624 7.53487 8.16774 8.31565 8.82348 9.40216 10.93544 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.002203 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.797770 B =12704.749935 C =13221.055387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.293 3.707 4 N -0.493 5.493 5 S 0.176 5.824 6 C 0.283 3.717 7 N -0.418 5.418 8 C 0.067 3.933 9 C -0.108 4.108 10 C 0.044 3.956 11 N -0.522 5.522 12 C 0.060 3.940 13 C -0.026 4.026 14 H 0.108 0.892 15 C 0.237 3.763 16 N -0.462 5.462 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.048 3.952 27 C 0.059 3.941 28 N -0.546 5.546 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.021 0.979 44 H 0.265 0.735 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -23.405 10.263 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C 0.003 3.997 4 N -0.325 5.325 5 S 0.313 5.687 6 C -0.095 4.095 7 N -0.137 5.137 8 C -0.060 4.060 9 C -0.147 4.147 10 C -0.084 4.084 11 N -0.244 5.244 12 C -0.068 4.068 13 C -0.049 4.049 14 H 0.126 0.874 15 C -0.080 4.080 16 N -0.139 5.139 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.082 4.082 27 C -0.068 4.068 28 N -0.276 5.276 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.390 -23.614 10.231 25.957 hybrid contribution 0.181 0.921 -0.860 1.273 sum -3.209 -22.693 9.371 24.760 Atomic orbital electron populations 1.21707 0.93435 1.02602 1.02556 1.20197 0.96719 0.86503 1.04411 1.23348 0.94895 0.99170 0.82324 1.77508 1.26988 1.02125 1.25854 1.85086 1.63274 1.18966 1.01386 1.27067 0.93150 0.93518 0.95809 1.56448 1.35029 1.11720 1.10474 1.22197 0.89649 1.02617 0.91555 1.20586 1.01354 0.98506 0.94255 1.21378 0.93300 0.96804 0.96881 1.61679 1.20691 1.38377 1.03669 1.22576 0.96190 0.87151 1.00919 1.19846 0.89463 0.98481 0.97092 0.87393 1.28928 0.93964 0.91275 0.93787 1.81002 1.12015 1.10576 1.10285 1.19603 0.94627 0.93207 0.96706 1.21005 1.02656 0.89387 1.43868 0.91034 1.25007 0.97995 0.95246 0.94883 1.69903 1.37905 0.98412 1.47108 0.86805 0.84879 0.77970 0.79822 1.20263 1.21208 1.18602 1.22013 1.00248 0.95182 0.90743 1.23056 1.01936 0.84909 0.96902 1.67346 1.25022 1.05598 1.29639 0.91249 0.92361 0.92120 0.88790 0.89165 0.92101 0.89184 0.90565 0.89721 0.90716 0.93728 0.88230 0.89883 0.94210 0.96088 0.92486 0.88173 0.93369 0.88464 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.90 37.16 0.37 -0.59 16 2 C -0.04 -0.28 6.47 -27.88 -0.18 -0.46 16 3 C 0.29 3.27 6.82 -159.03 -1.08 2.18 16 4 N -0.49 -5.98 12.15 29.54 0.36 -5.63 16 5 S 0.18 1.87 22.01 -107.50 -2.37 -0.49 16 6 C 0.28 3.15 6.97 -86.35 -0.60 2.55 16 7 N -0.42 -4.29 4.20 -174.13 -0.73 -5.02 16 8 C 0.07 0.66 5.35 -4.55 -0.02 0.64 16 9 C -0.11 -1.08 5.66 -29.33 -0.17 -1.25 16 10 C 0.04 0.50 3.57 -6.42 -0.02 0.48 16 11 N -0.52 -5.72 4.62 -239.23 -1.11 -6.82 16 12 C 0.06 0.72 4.92 -3.83 -0.02 0.70 16 13 C -0.03 -0.40 1.84 -93.41 -0.17 -0.57 16 14 H 0.11 1.57 6.04 -51.93 -0.31 1.26 16 15 C 0.24 4.29 10.92 -20.82 -0.23 4.06 16 16 N -0.46 -9.21 17.86 42.08 0.75 -8.46 16 17 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 18 C -0.53 -13.63 9.15 -34.44 -0.32 -13.95 16 19 H 0.07 2.03 7.84 -52.49 -0.41 1.62 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.88 19.95 27.47 -169.99 -4.67 15.29 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 26 C 0.05 0.47 3.78 -4.75 -0.02 0.45 16 27 C 0.06 0.52 5.03 -2.62 -0.01 0.51 16 28 N -0.55 -6.49 9.94 -14.58 -0.14 -6.63 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 35 H 0.09 0.91 7.12 -51.93 -0.37 0.54 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 38 H 0.07 0.91 7.51 -51.93 -0.39 0.52 16 39 H 0.04 0.59 5.14 -51.93 -0.27 0.32 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 42 H 0.04 0.74 7.20 -51.93 -0.37 0.37 16 43 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.10 0.89 6.44 -51.92 -0.33 0.56 16 46 H 0.05 0.51 6.53 -51.93 -0.34 0.17 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.48 7.20 -51.93 -0.37 0.11 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -31.54 387.07 -11.27 -42.80 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.30 Total: -1.77 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.67 Total: -3.57 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.10 Total: -58.09 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.37 Total: -0.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.54 -11.27 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.613 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds