Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48504 * 109.47253 * 270.00442 * 3 2 1 5 5 H 1.48505 * 109.47063 * 30.00283 * 3 2 1 6 6 H 1.48504 * 109.47360 * 150.00098 * 3 2 1 7 7 C 1.38801 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99896 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47043 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47084 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46717 * 175.39667 * 12 11 10 14 14 C 1.46205 * 110.99663 * 64.95109 * 13 12 11 15 15 C 1.51272 * 109.16026 * 144.71809 * 14 13 12 16 16 C 1.53854 * 109.56992 * 92.33408 * 15 14 13 17 17 N 1.47616 * 111.37377 * 320.04433 * 16 15 14 18 18 C 1.34778 * 118.74417 * 138.28073 * 17 16 15 19 19 O 1.21556 * 119.99458 * 185.70054 * 18 17 16 20 20 C 1.47839 * 120.00046 * 5.70112 * 18 17 16 21 21 C 1.39574 * 120.14329 * 218.81745 * 20 18 17 22 22 C 1.37963 * 119.85121 * 179.74807 * 21 20 18 23 23 C 1.38356 * 120.14430 * 0.53545 * 22 21 20 24 24 C 1.38359 * 120.29302 * 359.74260 * 23 22 21 25 25 C 1.37952 * 120.14546 * 359.97438 * 24 23 22 26 26 C 1.44874 * 122.50482 * 318.30656 * 17 16 15 27 27 C 1.41438 * 111.00398 * 293.90862 * 13 12 11 28 28 H 0.96997 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47133 * 59.99890 * 10 9 7 30 30 H 1.09004 * 109.47122 * 300.00040 * 10 9 7 31 31 H 1.08999 * 109.47049 * 59.99950 * 11 10 9 32 32 H 1.09004 * 109.46982 * 299.99866 * 11 10 9 33 33 H 1.09004 * 109.46961 * 55.39871 * 12 11 10 34 34 H 1.08997 * 109.46750 * 295.39898 * 12 11 10 35 35 H 1.09005 * 109.52672 * 264.63729 * 14 13 12 36 36 H 1.08998 * 109.53471 * 24.79403 * 14 13 12 37 37 H 1.09000 * 109.44559 * 212.49424 * 15 14 13 38 38 H 1.09000 * 109.44432 * 332.39691 * 15 14 13 39 39 H 1.09005 * 109.10392 * 199.53706 * 16 15 14 40 40 H 1.08998 * 109.00122 * 80.48925 * 16 15 14 41 41 H 1.07995 * 120.07564 * 0.02562 * 21 20 18 42 42 H 1.08006 * 119.92564 * 180.27588 * 22 21 20 43 43 H 1.08006 * 119.85264 * 179.71839 * 23 22 21 44 44 H 1.08002 * 119.92350 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.07452 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.43593 * 329.63177 * 26 17 16 47 47 H 1.09004 * 109.43828 * 209.76415 * 26 17 16 48 48 H 1.08997 * 109.38771 * 311.84189 * 27 13 12 49 49 H 1.08998 * 109.38790 * 71.53575 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5480 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3243 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6391 -7.6801 0.1087 14 6 1.8517 -8.0417 -1.0689 15 6 2.0713 -9.5051 -1.3827 16 6 0.9933 -10.3499 -0.6817 17 7 0.7114 -9.8434 0.6759 18 6 -0.5686 -9.7889 1.0944 19 8 -0.8366 -9.2805 2.1656 20 6 -1.6466 -10.3475 0.2509 21 6 -2.8754 -9.6920 0.1588 22 6 -3.8754 -10.2159 -0.6343 23 6 -3.6661 -11.3941 -1.3286 24 6 -2.4523 -12.0519 -1.2371 25 6 -1.4420 -11.5357 -0.4522 26 6 1.7580 -9.4021 1.5751 27 6 2.0240 -7.8919 1.3646 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 1.3710 -5.4840 -0.8914 32 1 1.3705 -5.4847 0.8886 33 1 3.8050 -6.0946 0.8441 34 1 3.7130 -6.2031 -0.9302 35 1 0.7947 -7.8666 -0.8682 36 1 2.1667 -7.4356 -1.9182 37 1 2.0114 -9.6581 -2.4603 38 1 3.0562 -9.8085 -1.0278 39 1 1.3375 -11.3820 -0.6132 40 1 0.0777 -10.3178 -1.2720 41 1 -3.0415 -8.7744 0.7036 42 1 -4.8252 -9.7073 -0.7099 43 1 -4.4538 -11.8024 -1.9445 44 1 -2.2955 -12.9715 -1.7814 45 1 -0.4949 -12.0499 -0.3820 46 1 2.6705 -9.9628 1.3726 47 1 1.4478 -9.5754 2.6056 48 1 2.6797 -7.5265 2.1549 49 1 1.0792 -7.3497 1.4007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096444338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -1.179750 kcal Electronic energy + Delta-G solvation = -28207.207883 eV Core-core repulsion = 24453.344154 eV Total energy + Delta-G solvation = -3753.863729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99456 -39.22525 -38.15217 -35.96047 -32.91367 -32.80810 -32.40650 -31.43274 -31.29286 -28.48981 -26.60621 -25.67593 -24.96084 -23.94205 -22.85854 -22.21204 -21.77881 -20.02019 -19.59577 -17.76571 -17.45449 -16.84469 -16.49954 -15.98103 -15.67044 -15.49657 -15.31812 -14.79678 -14.70198 -14.49162 -14.22421 -13.99488 -13.91349 -13.65568 -13.56830 -13.16890 -13.00537 -12.68039 -12.44051 -12.02877 -11.87230 -11.80952 -11.68306 -11.58953 -11.45618 -11.28683 -11.24573 -11.05015 -10.93192 -10.70457 -10.66984 -10.29588 -10.03641 -9.67118 -9.31579 -9.21473 -9.04820 -8.87064 -8.33022 -8.03780 -6.51938 -6.21461 -3.91896 0.63448 1.01880 2.51631 2.77417 3.22096 3.23148 3.29818 3.48006 3.59181 3.90173 4.15886 4.23587 4.44263 4.55799 4.59890 4.70853 4.75968 4.92614 4.96526 5.03702 5.09650 5.14223 5.16419 5.25141 5.31664 5.33297 5.37866 5.46834 5.48451 5.53739 5.62015 5.64048 5.68693 5.75697 5.79713 5.89061 5.95716 5.98593 6.01453 6.06469 6.11536 6.11899 6.34072 6.41923 6.53689 6.54742 6.73274 7.06459 7.13904 7.40924 7.61554 7.95439 8.37840 9.24618 10.86776 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002274 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.191553 B =12307.503635 C =13456.342815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.138 6.138 10 C -0.108 4.108 11 C -0.132 4.132 12 C 0.067 3.933 13 N -0.560 5.560 14 C 0.070 3.930 15 C -0.131 4.131 16 C 0.102 3.898 17 N -0.601 5.601 18 C 0.552 3.448 19 O -0.529 6.529 20 C -0.129 4.129 21 C -0.065 4.065 22 C -0.125 4.125 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.092 4.092 26 C 0.120 3.880 27 C 0.056 3.944 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -28.452 -4.122 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.090 5.910 10 C -0.257 4.257 11 C -0.172 4.172 12 C -0.062 4.062 13 N -0.283 5.283 14 C -0.058 4.058 15 C -0.170 4.170 16 C -0.021 4.021 17 N -0.334 5.334 18 C 0.341 3.659 19 O -0.406 6.406 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.143 4.143 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.110 4.110 26 C -0.003 4.003 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.513 -28.569 -3.532 28.827 hybrid contribution 1.160 1.876 -0.071 2.207 sum -0.353 -26.693 -3.603 26.937 Atomic orbital electron populations 1.70030 1.05933 1.27291 1.47311 1.25027 0.95084 0.99108 0.94645 0.86163 0.79452 0.81554 0.78344 1.20277 1.20752 1.19676 1.22682 0.94475 0.90762 1.58393 0.90975 1.84675 1.09846 0.99593 1.96845 1.23173 1.02673 0.97151 1.02725 1.21927 0.98597 0.94194 1.02506 1.22267 0.96481 0.84882 1.02578 1.58663 1.43129 1.24479 1.02006 1.21472 0.96266 0.95465 0.92567 1.21919 0.99555 0.95387 1.00148 1.22371 1.00317 0.97104 0.82265 1.47736 1.06037 1.64108 1.15491 1.18525 0.82647 0.78799 0.85953 1.90812 1.82631 1.44055 1.23054 1.19933 0.95230 0.97615 1.00462 1.21296 0.91307 0.99469 0.96263 1.21191 0.99396 0.96430 0.97235 1.21373 0.97227 0.94941 0.98172 1.21106 0.93445 1.00391 0.99784 1.21463 0.99505 0.94853 0.95174 1.21617 0.90091 0.94709 0.93919 1.21658 0.98600 0.95841 0.91311 0.92330 0.92175 0.92200 0.91916 0.91649 0.90815 0.90821 0.94041 0.90751 0.90227 0.90034 0.91629 0.89431 0.84966 0.85217 0.85614 0.85439 0.85164 0.89800 0.89513 0.89817 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.14 -3.71 21.44 -107.50 -2.30 -6.02 16 10 C -0.11 -2.22 5.67 37.16 0.21 -2.01 16 11 C -0.13 -2.22 4.79 -26.73 -0.13 -2.35 16 12 C 0.07 0.88 5.08 -3.82 -0.02 0.86 16 13 N -0.56 -6.53 4.00 -239.49 -0.96 -7.49 16 14 C 0.07 0.76 4.26 -5.07 -0.02 0.74 16 15 C -0.13 -1.01 5.80 -27.16 -0.16 -1.17 16 16 C 0.10 0.76 4.54 -2.99 -0.01 0.74 16 17 N -0.60 -6.23 2.18 -173.53 -0.38 -6.61 16 18 C 0.55 7.07 7.27 -12.33 -0.09 6.98 16 19 O -0.53 -8.80 16.40 5.32 0.09 -8.71 16 20 C -0.13 -1.38 5.00 -104.97 -0.53 -1.90 16 21 C -0.06 -0.69 9.63 -39.18 -0.38 -1.06 16 22 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 23 C -0.10 -0.68 10.04 -39.49 -0.40 -1.08 16 24 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 25 C -0.09 -0.71 7.46 -39.19 -0.29 -1.01 16 26 C 0.12 1.26 5.47 -3.98 -0.02 1.23 16 27 C 0.06 0.68 4.86 -5.74 -0.03 0.66 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 31 H 0.06 1.09 7.46 -51.93 -0.39 0.70 16 32 H 0.06 1.19 6.60 -51.93 -0.34 0.84 16 33 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 34 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 35 H 0.04 0.53 7.32 -51.93 -0.38 0.15 16 36 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 39 H 0.07 0.36 7.44 -51.93 -0.39 -0.03 16 40 H 0.09 0.65 5.21 -51.93 -0.27 0.38 16 41 H 0.13 1.51 8.05 -52.49 -0.42 1.09 16 42 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.13 0.78 6.04 -52.49 -0.32 0.46 16 46 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 47 H 0.09 0.98 7.37 -51.93 -0.38 0.60 16 48 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 49 H 0.04 0.58 6.83 -51.93 -0.35 0.23 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -34.52 397.39 -12.10 -46.62 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.78 Total: 0.04 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.46 Total: -14.88 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.60 Total: -39.87 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.30 Total: -6.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.52 -12.10 -46.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.437 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds