Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99765 * 2 1 4 4 C 1.53003 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47019 * 65.80931 * 4 3 2 6 6 C 1.46501 * 119.99956 * 273.85911 * 5 4 3 7 7 C 1.50699 * 109.47053 * 269.99864 * 6 5 4 8 8 H 1.08002 * 120.00158 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00312 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00305 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47195 * 89.99982 * 11 9 7 13 13 H 1.48493 * 109.47452 * 210.00089 * 11 9 7 14 14 H 1.48503 * 109.46879 * 330.00240 * 11 9 7 15 15 C 1.34778 * 119.99936 * 93.85667 * 5 4 3 16 16 O 1.21486 * 119.99512 * 185.06860 * 15 5 4 17 17 C 1.48326 * 119.99925 * 5.06479 * 15 5 4 18 18 C 1.36570 * 120.80864 * 75.80830 * 17 15 5 19 19 C 1.41594 * 120.03312 * 179.97438 * 18 17 15 20 20 O 1.21836 * 119.17108 * 179.97438 * 19 18 17 21 21 N 1.34403 * 121.66616 * 0.02562 * 19 18 17 22 22 H 0.96999 * 119.40851 * 179.97438 * 21 19 18 23 23 C 1.37860 * 121.19245 * 359.97315 * 21 19 18 24 24 C 1.39075 * 120.85989 * 180.02562 * 23 21 19 25 25 C 1.38045 * 119.73801 * 180.23093 * 24 23 21 26 26 F 1.35097 * 119.69754 * 179.74380 * 25 24 23 27 27 C 1.39136 * 120.60884 * 359.44593 * 25 24 23 28 28 C 1.36553 * 120.52714 * 0.58722 * 27 25 24 29 29 C 1.39768 * 119.77835 * 359.69261 * 28 27 25 30 30 H 1.08994 * 109.46805 * 60.00408 * 1 2 3 31 31 H 1.08997 * 109.46623 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47098 * 300.00158 * 1 2 3 33 33 H 1.09000 * 109.46930 * 60.00071 * 3 2 1 34 34 H 1.09004 * 109.47046 * 299.99995 * 3 2 1 35 35 H 1.09003 * 109.46773 * 305.81148 * 4 3 2 36 36 H 1.08993 * 109.47188 * 185.80872 * 4 3 2 37 37 H 1.09000 * 109.47548 * 29.99836 * 6 5 4 38 38 H 1.09003 * 109.47496 * 150.00009 * 6 5 4 39 39 H 0.97004 * 119.99709 * 180.02562 * 10 9 7 40 40 H 1.08001 * 119.98603 * 0.02562 * 18 17 15 41 41 H 1.07999 * 120.12987 * 359.95763 * 24 23 21 42 42 H 1.08005 * 119.73641 * 180.28003 * 27 25 24 43 43 H 1.07997 * 120.11277 * 179.68139 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9781 0.5818 -1.2590 6 6 4.0270 -0.8759 -1.3959 7 6 5.3843 -1.3751 -0.9721 8 1 6.1353 -0.6764 -0.6342 9 6 5.6674 -2.7237 -1.0158 10 7 4.7531 -3.5745 -1.4278 11 14 7.3501 -3.3424 -0.4912 12 1 7.3349 -3.6457 0.9624 13 1 7.6835 -4.5743 -1.2504 14 1 8.3697 -2.2989 -0.7685 15 6 4.3404 1.3682 -2.2919 16 8 4.6189 0.8714 -3.3649 17 6 4.3988 2.8402 -2.1184 18 6 5.4319 3.4243 -1.4427 19 6 5.4716 4.8312 -1.2873 20 8 6.4003 5.3357 -0.6812 21 7 4.5101 5.6240 -1.7906 22 1 4.5698 6.5839 -1.6645 23 6 3.4404 5.0977 -2.4829 24 6 2.4496 5.9246 -3.0013 25 6 1.3861 5.3724 -3.6866 26 9 0.4215 6.1760 -4.1853 27 6 1.3018 3.9963 -3.8739 28 6 2.2642 3.1677 -3.3721 29 6 3.3464 3.7059 -2.6701 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8465 -0.8900 35 1 3.8498 0.5568 0.8343 36 1 3.9783 2.1753 0.1046 37 1 3.2609 -1.3261 -0.7645 38 1 3.8476 -1.1495 -2.4357 39 1 4.9522 -4.5234 -1.4582 40 1 6.2195 2.8131 -1.0273 41 1 2.5097 6.9942 -2.8643 42 1 0.4658 3.5797 -4.4162 43 1 2.1894 2.1001 -3.5169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096449583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = -106.893889 kcal Electronic energy + Delta-G solvation = -31169.036676 eV Core-core repulsion = 26708.542567 eV Total energy + Delta-G solvation = -4460.494109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.132 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.35042 -41.61891 -39.36498 -38.74883 -37.59448 -35.62786 -35.02567 -34.21622 -32.60876 -30.66209 -29.71102 -29.63014 -27.53437 -26.06833 -25.08860 -23.79618 -23.52908 -22.81539 -22.38323 -19.65743 -18.74518 -18.70969 -17.92181 -16.98440 -16.58588 -16.38572 -16.37156 -16.11930 -15.97444 -15.70106 -15.53647 -15.29724 -14.87515 -14.67851 -14.45893 -14.24871 -14.04034 -13.64558 -13.49794 -13.18049 -13.10387 -12.37031 -12.31127 -12.01337 -11.91661 -11.75173 -11.74249 -11.39132 -11.24895 -10.95100 -10.91722 -10.63937 -10.58894 -10.34454 -10.16769 -9.66977 -9.50135 -9.27319 -8.97814 -8.41487 -8.34935 -7.83637 -6.03545 -4.08291 0.01253 0.69342 1.27629 2.52284 2.68566 2.94932 3.31785 3.38425 3.39950 3.44933 3.55869 3.77850 3.97133 4.14019 4.25250 4.33995 4.46734 4.53743 4.68863 4.75746 5.13026 5.20897 5.25824 5.31379 5.36154 5.39736 5.45605 5.48707 5.51378 5.53418 5.57440 5.73155 5.80136 5.82251 6.04664 6.13989 6.23861 6.35320 6.65672 7.04530 7.30546 7.39126 7.52704 7.68929 7.92474 8.20923 8.22221 8.65803 8.96294 9.56107 11.04520 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.003755 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.179886 B = 7454.248108 C = 8661.597432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.572 5.572 6 C 0.247 3.753 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.542 3.458 16 O -0.518 6.518 17 C -0.003 4.003 18 C -0.188 4.188 19 C 0.544 3.456 20 O -0.529 6.529 21 N -0.629 5.629 22 H 0.417 0.583 23 C 0.215 3.785 24 C -0.204 4.204 25 C 0.155 3.845 26 F -0.131 7.131 27 C -0.181 4.181 28 C -0.015 4.015 29 C -0.118 4.118 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 18.288 0.060 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.302 5.302 6 C 0.129 3.871 7 C -0.571 4.571 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.326 3.674 16 O -0.394 6.394 17 C -0.009 4.009 18 C -0.209 4.209 19 C 0.340 3.660 20 O -0.408 6.408 21 N -0.267 5.267 22 H 0.255 0.745 23 C 0.112 3.888 24 C -0.226 4.226 25 C 0.135 3.865 26 F -0.109 7.109 27 C -0.200 4.200 28 C -0.034 4.034 29 C -0.121 4.121 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.182 0.818 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.376 17.730 -0.169 20.544 hybrid contribution 0.506 0.452 0.243 0.721 sum -9.870 18.182 0.075 20.689 Atomic orbital electron populations 1.22708 0.81934 1.02698 0.99151 1.88116 1.18815 1.26652 1.95148 1.23056 0.94841 0.85593 0.99741 1.21652 0.91685 0.99496 0.89172 1.48245 1.61518 1.09716 1.10750 1.19485 0.97603 0.70779 0.99256 1.21431 0.98667 0.92369 1.44583 0.92470 1.24890 0.97149 0.96634 0.95151 1.69938 1.33628 1.02725 1.46678 0.86531 0.84250 0.78405 0.78448 1.20626 1.21125 1.19868 1.18079 0.79540 0.84437 0.85371 1.90826 1.48896 1.74078 1.25634 1.21660 0.92646 0.95366 0.91262 1.22456 1.01357 0.93402 1.03722 1.17051 0.81533 0.87977 0.79406 1.90962 1.32678 1.75790 1.41385 1.43419 1.21054 1.12039 1.50234 0.74485 1.17417 0.87699 0.91407 0.92250 1.20483 0.95344 1.00633 1.06102 1.17497 0.86066 0.88180 0.94774 1.91537 1.61216 1.73173 1.85017 1.20837 1.02500 0.91173 1.05522 1.20882 0.90171 1.01138 0.91197 1.18396 0.97794 0.90117 1.05843 0.94557 0.89648 0.94664 0.92913 0.93688 0.88413 0.89975 0.92766 0.93872 0.92735 0.81755 0.83466 0.83700 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.91 9.21 -35.23 -0.32 -6.24 16 3 C 0.05 0.61 6.28 37.16 0.23 0.85 16 4 C 0.10 1.62 5.78 -4.04 -0.02 1.59 16 5 N -0.57 -11.33 2.44 -176.00 -0.43 -11.76 16 6 C 0.25 6.18 5.03 -5.19 -0.03 6.15 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 11 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.54 10.50 6.00 -12.11 -0.07 10.43 16 16 O -0.52 -12.20 16.66 5.38 0.09 -12.11 16 17 C 0.00 -0.05 4.36 -102.79 -0.45 -0.50 16 18 C -0.19 -2.72 8.57 -38.90 -0.33 -3.05 16 19 C 0.54 7.36 7.67 -15.15 -0.12 7.24 16 20 O -0.53 -8.67 17.87 5.07 0.09 -8.58 16 21 N -0.63 -6.32 5.29 -12.52 -0.07 -6.38 16 22 H 0.42 3.02 8.75 -40.82 -0.36 2.66 16 23 C 0.22 2.17 6.65 -83.89 -0.56 1.61 16 24 C -0.20 -1.65 9.88 -39.34 -0.39 -2.04 16 25 C 0.16 1.37 7.29 -39.32 -0.29 1.08 16 26 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 27 C -0.18 -1.66 9.95 -39.86 -0.40 -2.05 16 28 C -0.02 -0.18 9.32 -39.62 -0.37 -0.55 16 29 C -0.12 -1.45 5.89 -104.82 -0.62 -2.07 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.56 8.01 -51.93 -0.42 0.15 16 35 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 36 H 0.08 1.08 5.82 -51.93 -0.30 0.78 16 37 H 0.05 1.41 6.79 -51.93 -0.35 1.06 16 38 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 43 H 0.15 1.87 7.27 -52.49 -0.38 1.49 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -34.18 376.37 -7.04 -41.22 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.12 Total: 1.04 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.71 Total: 6.96 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.24 Total: -43.40 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.14 Total: -26.93 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.18 -7.04 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.671 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds