Wall clock time and date at job start Tue Mar 31 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48497 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46802 * 299.99997 * 3 2 1 6 6 H 1.48492 * 109.46972 * 59.99750 * 3 2 1 7 7 C 1.37881 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47196 * 184.72623 * 9 7 2 11 11 C 1.46900 * 110.99645 * 62.52138 * 10 9 7 12 12 C 1.50694 * 109.47331 * 66.04839 * 11 10 9 13 13 C 1.38230 * 119.61824 * 94.99868 * 12 11 10 14 14 C 1.38633 * 119.16038 * 180.02562 * 13 12 11 15 15 C 1.38677 * 118.41824 * 359.97438 * 14 13 12 16 16 C 1.38180 * 119.16521 * 0.28362 * 15 14 13 17 17 N 1.31860 * 119.61971 * 275.02099 * 12 11 10 18 18 C 1.46897 * 110.99975 * 298.56547 * 10 9 7 19 19 C 1.50702 * 109.47186 * 288.05621 * 18 10 9 20 20 N 1.32361 * 118.50770 * 269.72660 * 19 18 10 21 21 C 1.32617 * 121.48570 * 179.75035 * 20 19 18 22 22 N 1.37844 * 120.91656 * 180.25971 * 21 20 19 23 23 C 1.41659 * 118.17086 * 0.51268 * 21 20 19 24 24 C 1.39929 * 122.10956 * 179.72730 * 23 21 20 25 25 C 1.36386 * 119.49534 * 180.02562 * 24 23 21 26 26 C 1.39213 * 120.89765 * 0.02562 * 25 24 23 27 27 C 1.36311 * 121.02541 * 359.95452 * 26 25 24 28 28 C 1.40155 * 119.58427 * 0.04592 * 27 26 25 29 29 N 1.31170 * 118.51254 * 89.99943 * 19 18 10 30 30 H 0.96994 * 120.00494 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47173 * 64.72795 * 9 7 2 32 32 H 1.08998 * 109.47276 * 304.72639 * 9 7 2 33 33 H 1.09001 * 109.47200 * 306.04553 * 11 10 9 34 34 H 1.09003 * 109.46496 * 186.04909 * 11 10 9 35 35 H 1.07996 * 120.42141 * 0.04399 * 13 12 11 36 36 H 1.07994 * 120.78912 * 180.02562 * 14 13 12 37 37 H 1.08004 * 120.41293 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.61773 * 179.69918 * 16 15 14 39 39 H 1.09002 * 109.47128 * 48.05350 * 18 10 9 40 40 H 1.08997 * 109.47086 * 168.05368 * 18 10 9 41 41 H 0.97004 * 120.00398 * 180.24916 * 22 21 20 42 42 H 0.96998 * 119.99903 * 0.26323 * 22 21 20 43 43 H 1.08001 * 120.25069 * 0.04274 * 24 23 21 44 44 H 1.08007 * 119.54843 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.48356 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.20982 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2017 -3.6133 0.1162 11 6 2.9363 -3.5500 1.3867 12 6 1.9815 -3.7744 2.5308 13 6 1.8328 -5.0437 3.0575 14 6 0.9514 -5.2394 4.1096 15 6 0.2499 -4.1461 4.5950 16 6 0.4468 -2.9078 4.0143 17 7 1.2973 -2.7577 3.0176 18 6 3.1256 -3.6365 -1.0256 19 6 2.3879 -4.0880 -2.2597 20 7 2.3547 -5.3816 -2.5380 21 6 1.7186 -5.8443 -3.6057 22 7 1.6870 -7.1945 -3.8814 23 6 1.0770 -4.9123 -4.4580 24 6 0.3875 -5.3091 -5.6091 25 6 -0.2106 -4.3662 -6.3923 26 6 -0.1436 -3.0154 -6.0620 27 6 0.5200 -2.5968 -4.9474 28 6 1.1461 -3.5390 -4.1200 29 7 1.8124 -3.1808 -3.0123 30 1 -0.4850 0.8399 -0.0004 31 1 0.6891 -2.5951 -0.9273 32 1 0.5628 -2.5206 0.8466 33 1 3.4018 -2.5696 1.4889 34 1 3.7067 -4.3211 1.3997 35 1 2.3962 -5.8723 2.6548 36 1 0.8150 -6.2199 4.5414 37 1 -0.4447 -4.2619 5.4139 38 1 -0.0994 -2.0523 4.3833 39 1 3.5275 -2.6364 -1.1881 40 1 3.9428 -4.3271 -0.8177 41 1 1.2208 -7.5181 -4.6681 42 1 2.1307 -7.8210 -3.2887 43 1 0.3291 -6.3542 -5.8753 44 1 -0.7427 -4.6715 -7.2812 45 1 -0.6251 -2.2880 -6.6987 46 1 0.5634 -1.5455 -4.7034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096501494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:04 Heat of formation + Delta-G solvation = 127.224589 kcal Electronic energy + Delta-G solvation = -30217.448161 eV Core-core repulsion = 26300.575351 eV Total energy + Delta-G solvation = -3916.872810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.96128 -39.64516 -37.67289 -36.57262 -35.53012 -32.29491 -32.10151 -31.83558 -31.25333 -30.82076 -29.63746 -27.21920 -26.77192 -24.39368 -23.94323 -22.99625 -22.76926 -21.65395 -21.54577 -19.84455 -18.54250 -17.94965 -16.89923 -16.44507 -16.09475 -15.81973 -15.61096 -15.20610 -15.03989 -14.84623 -14.63907 -14.40660 -14.22823 -13.68011 -13.52865 -13.33630 -12.83643 -12.77014 -12.24720 -12.20798 -12.18832 -12.13584 -11.47185 -11.44019 -11.34098 -11.05215 -10.85701 -10.66680 -10.59317 -10.28570 -10.01594 -9.81414 -9.44776 -9.35801 -9.26260 -8.95740 -8.63758 -8.60899 -8.48219 -8.10608 -7.60723 -7.10246 -5.73596 -3.75686 0.73624 1.07563 1.64042 1.82775 2.30389 3.27102 3.34305 3.44574 3.51362 3.54382 4.24160 4.50459 4.55334 4.64556 4.65867 4.72804 4.93284 4.94406 5.03918 5.17527 5.30235 5.37906 5.46016 5.52641 5.58014 5.60991 5.64433 5.70933 5.96539 5.99246 6.06949 6.15343 6.21881 6.22865 6.33780 6.48826 6.52601 6.56340 6.61663 6.71792 6.80393 6.82582 7.14838 7.22563 7.25193 7.40776 7.82089 7.85063 8.10656 8.20856 8.38228 8.54334 8.74451 8.87956 9.26386 9.85953 11.34251 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.004080 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.245912 B = 6860.486468 C = 9027.639654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.185 3.815 10 N -0.530 5.530 11 C 0.107 3.893 12 C 0.157 3.843 13 C -0.164 4.164 14 C -0.087 4.087 15 C -0.190 4.190 16 C 0.099 3.901 17 N -0.440 5.440 18 C 0.122 3.878 19 C 0.395 3.605 20 N -0.580 5.580 21 C 0.464 3.536 22 N -0.829 5.829 23 C -0.207 4.207 24 C -0.075 4.075 25 C -0.143 4.143 26 C -0.087 4.087 27 C -0.098 4.098 28 C 0.192 3.808 29 N -0.511 5.511 30 H 0.255 0.745 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.407 0.593 42 H 0.409 0.591 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -14.994 -5.701 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.710 3.290 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.255 5.255 11 C -0.021 4.021 12 C 0.018 3.982 13 C -0.185 4.185 14 C -0.113 4.113 15 C -0.210 4.210 16 C -0.058 4.058 17 N -0.149 5.149 18 C -0.007 4.007 19 C 0.126 3.874 20 N -0.306 5.306 21 C 0.207 3.793 22 N -0.375 5.375 23 C -0.215 4.215 24 C -0.095 4.095 25 C -0.161 4.161 26 C -0.108 4.108 27 C -0.117 4.117 28 C 0.064 3.936 29 N -0.228 5.228 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.238 0.762 42 H 0.239 0.761 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.568 -13.993 -5.266 15.033 hybrid contribution -0.051 0.177 -0.432 0.469 sum 1.517 -13.816 -5.697 15.021 Atomic orbital electron populations 1.69959 1.05866 1.25791 1.51472 1.24753 0.94498 0.98367 0.95322 0.86724 0.80166 0.84971 0.77119 1.20120 1.21468 1.21427 1.21407 0.92473 0.91786 1.49775 0.93100 1.19909 0.90956 0.84910 0.98209 1.62517 1.16307 1.48182 0.98484 1.20812 0.92755 1.01427 0.87149 1.21204 0.94154 0.88368 0.94429 1.21920 1.00525 0.98264 0.97790 1.21418 0.95385 0.98636 0.95870 1.22039 1.02037 0.94558 1.02370 1.22798 0.94825 0.96377 0.91849 1.67792 1.04681 1.33999 1.08430 1.20675 0.92882 1.00852 0.86322 1.22742 0.88797 0.82407 0.93473 1.67754 1.25560 1.18448 1.18854 1.18596 0.86994 0.85595 0.88148 1.41961 1.60817 1.03472 1.31206 1.18991 1.07312 0.95406 0.99794 1.20571 0.96484 0.99057 0.93409 1.20744 1.01741 0.93145 1.00496 1.20925 0.97519 0.95919 0.96468 1.20846 0.97107 1.00104 0.93617 1.18920 0.93005 0.89901 0.91779 1.68960 1.12130 1.36985 1.04754 0.93542 0.95009 0.93716 0.91481 0.91314 0.85389 0.85785 0.85771 0.83462 0.90340 0.90530 0.76188 0.76081 0.86285 0.85936 0.85480 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.07 2.09 5.46 -17.82 -0.10 2.00 16 3 Si 0.88 22.53 29.54 -169.99 -5.02 17.51 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.52 -14.43 7.34 -34.44 -0.25 -14.69 16 8 H 0.05 1.41 5.95 -52.49 -0.31 1.10 16 9 C 0.19 4.97 4.68 -4.98 -0.02 4.94 16 10 N -0.53 -11.74 4.65 -238.97 -1.11 -12.85 16 11 C 0.11 2.12 5.09 -4.98 -0.03 2.10 16 12 C 0.16 3.09 5.70 -82.59 -0.47 2.61 16 13 C -0.16 -2.66 9.72 -39.44 -0.38 -3.05 16 14 C -0.09 -1.24 10.18 -39.27 -0.40 -1.64 16 15 C -0.19 -2.80 10.11 -39.44 -0.40 -3.20 16 16 C 0.10 1.79 11.18 -17.55 -0.20 1.60 16 17 N -0.44 -9.53 8.78 -9.48 -0.08 -9.61 16 18 C 0.12 2.51 5.21 -4.98 -0.03 2.48 16 19 C 0.40 8.22 6.61 -157.24 -1.04 7.18 16 20 N -0.58 -10.60 10.31 -9.70 -0.10 -10.70 16 21 C 0.46 7.13 7.87 -154.98 -1.22 5.91 16 22 N -0.83 -8.19 8.98 31.45 0.28 -7.91 16 23 C -0.21 -3.28 5.75 -106.68 -0.61 -3.89 16 24 C -0.07 -0.89 9.54 -39.62 -0.38 -1.27 16 25 C -0.14 -1.60 9.96 -39.89 -0.40 -2.00 16 26 C -0.09 -1.12 9.95 -39.91 -0.40 -1.52 16 27 C -0.10 -1.63 10.01 -39.56 -0.40 -2.03 16 28 C 0.19 3.65 6.61 -84.86 -0.56 3.09 16 29 N -0.51 -11.26 9.28 -8.82 -0.08 -11.34 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.03 0.95 6.68 -51.93 -0.35 0.61 16 32 H 0.04 1.32 6.20 -51.93 -0.32 1.00 16 33 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 34 H 0.07 1.12 7.76 -51.93 -0.40 0.72 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.15 2.40 8.06 -52.49 -0.42 1.97 16 39 H 0.08 1.75 6.19 -51.93 -0.32 1.43 16 40 H 0.08 1.34 7.81 -51.93 -0.41 0.94 16 41 H 0.41 2.74 7.09 -40.82 -0.29 2.45 16 42 H 0.41 3.47 8.95 -40.82 -0.37 3.11 16 43 H 0.12 0.96 6.59 -52.49 -0.35 0.61 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.14 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -36.21 381.60 -12.45 -48.66 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.55 Total: 8.42 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -7.28 Total: -1.38 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -0.36 Total: -78.96 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.21 -12.45 -48.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096501494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.884 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds