Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33614 * 122.06286 * 2 1 4 4 S 1.76247 * 108.27081 * 179.87721 * 3 2 1 5 5 C 1.76181 * 89.85748 * 0.31766 * 4 3 2 6 6 C 1.47421 * 125.47972 * 179.81721 * 5 4 3 7 7 C 1.43194 * 120.00399 * 107.24865 * 6 5 4 8 8 N 5.26675 * 128.66453 * 149.19107 * 2 1 3 9 9 C 1.37804 * 119.99972 * 287.24501 * 6 5 4 10 10 C 1.41827 * 119.99862 * 351.92698 * 9 6 5 11 11 C 1.37789 * 126.86222 * 342.55316 * 10 9 6 12 12 N 1.35715 * 109.46655 * 179.97438 * 11 10 9 13 13 C 1.46502 * 124.73736 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46937 * 265.02585 * 13 12 11 15 15 H 1.08006 * 120.00471 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99422 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00222 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47214 * 89.99823 * 18 16 14 20 20 H 1.48495 * 109.47296 * 209.99680 * 18 16 14 21 21 H 1.48496 * 109.47292 * 330.00436 * 18 16 14 22 22 C 1.37995 * 110.52730 * 0.02562 * 12 11 10 23 23 C 1.39165 * 132.96039 * 180.02562 * 22 12 11 24 24 C 1.37766 * 119.95123 * 179.33952 * 23 22 12 25 25 C 1.38742 * 120.63204 * 0.55224 * 24 23 22 26 26 C 1.37783 * 120.27689 * 359.64667 * 25 24 23 27 27 C 1.39235 * 119.68864 * 359.97438 * 26 25 24 28 28 N 1.30420 * 109.03391 * 359.81742 * 5 4 3 29 29 H 1.09002 * 109.46979 * 269.73692 * 1 2 3 30 30 H 1.09002 * 109.46887 * 149.73737 * 1 2 3 31 31 H 1.08993 * 109.46932 * 29.73801 * 1 2 3 32 32 H 1.07995 * 125.86509 * 359.97081 * 3 2 1 33 33 H 1.07997 * 120.00266 * 171.93009 * 9 6 5 34 34 H 1.07993 * 125.26879 * 359.96047 * 11 10 9 35 35 H 1.08996 * 109.46569 * 25.02062 * 13 12 11 36 36 H 1.08997 * 109.47330 * 145.02859 * 13 12 11 37 37 H 0.97002 * 119.99666 * 179.97438 * 17 16 14 38 38 H 1.08007 * 120.02460 * 359.97401 * 23 22 12 39 39 H 1.08004 * 119.68056 * 180.19513 * 24 23 22 40 40 H 1.07998 * 119.86305 * 179.62385 * 25 24 23 41 41 H 1.07997 * 120.15384 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2163 1.1323 0.0000 4 16 3.9280 0.7122 0.0036 5 6 3.5037 -0.9978 -0.0050 6 6 4.4629 -2.1173 -0.0106 7 6 4.6494 -2.9063 1.1698 8 7 4.7975 -3.5320 2.1063 9 6 5.1799 -2.4047 -1.1518 10 6 4.8754 -1.7395 -2.3668 11 6 3.7194 -1.0517 -2.6655 12 7 3.8018 -0.5543 -3.9255 13 6 2.7552 0.2326 -4.5824 14 6 1.8906 -0.6779 -5.4158 15 1 2.0996 -1.7370 -5.4522 16 6 0.8321 -0.1592 -6.1312 17 7 0.5767 1.1301 -6.0857 18 14 -0.2390 -1.2877 -7.1647 19 1 -1.3661 -1.7926 -6.3400 20 1 -0.7747 -0.5343 -8.3268 21 1 0.5720 -2.4336 -7.6488 22 6 5.0087 -0.8941 -4.5019 23 6 5.5709 -0.6347 -5.7483 24 6 6.8317 -1.1037 -6.0451 25 6 7.5472 -1.8451 -5.1159 26 6 7.0060 -2.1159 -3.8781 27 6 5.7358 -1.6412 -3.5620 28 7 2.2047 -1.1137 -0.0056 29 1 -0.3633 -0.0047 1.0277 30 1 -0.3633 -0.8876 -0.5179 31 1 -0.3633 0.8923 -0.5097 32 1 1.8105 2.1331 -0.0004 33 1 5.9735 -3.1364 -1.1210 34 1 2.8779 -0.9279 -2.0001 35 1 2.1423 0.7244 -3.8270 36 1 3.2145 0.9847 -5.2238 37 1 -0.1677 1.4951 -6.5892 38 1 5.0232 -0.0574 -6.4786 39 1 7.2651 -0.8972 -7.0126 40 1 8.5322 -2.2119 -5.3640 41 1 7.5648 -2.6928 -3.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096843981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = 147.573780 kcal Electronic energy + Delta-G solvation = -27083.815785 eV Core-core repulsion = 23442.452408 eV Total energy + Delta-G solvation = -3641.363378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.094 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11445 -39.68169 -36.95693 -36.65786 -34.92323 -33.34456 -31.99030 -30.75078 -29.84552 -28.50519 -27.60429 -27.18021 -25.04757 -23.58701 -22.61325 -22.10744 -20.75461 -19.51603 -19.22074 -18.20960 -16.97408 -16.86754 -16.34026 -16.21005 -15.37797 -14.91446 -14.51841 -14.46977 -14.25868 -13.93589 -13.63046 -13.52556 -13.44017 -13.31862 -13.03180 -12.67939 -12.55934 -12.41734 -12.35120 -12.10940 -11.86402 -11.71381 -11.48344 -11.33215 -11.17163 -11.06114 -10.95903 -10.64515 -10.47238 -10.28624 -9.71738 -9.52381 -9.33434 -8.84255 -8.80915 -8.50304 -7.85243 -7.01136 -6.42942 -4.54179 0.49479 0.77557 1.42414 1.61866 1.84895 2.05149 2.75710 2.93137 3.06976 3.10832 3.18219 3.22275 3.44324 3.64077 4.11250 4.14907 4.25185 4.37340 4.88990 4.92335 4.93392 5.14930 5.19112 5.25858 5.29625 5.34947 5.51352 5.59582 5.68007 5.76896 5.86067 5.86334 5.99516 6.05112 6.13548 6.23207 6.34247 6.36406 6.55818 6.71946 6.76101 6.86889 6.99278 7.16968 7.46147 7.63163 7.66862 7.71340 7.73446 7.79254 8.52064 9.14838 10.62978 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.007742 B = 0.005005 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.540367 B = 5592.848921 C = 7946.759438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.064 3.936 3 C -0.250 4.250 4 S 0.089 5.911 5 C 0.144 3.856 6 C -0.107 4.107 7 C 0.283 3.717 8 N -0.446 5.446 9 C 0.117 3.883 10 C -0.241 4.241 11 C 0.151 3.849 12 N -0.424 5.424 13 C 0.229 3.771 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.887 5.887 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.092 3.908 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.091 4.091 27 C -0.073 4.073 28 N -0.457 5.457 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.174 0.826 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 0.627 5.950 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.389 4.389 4 S 0.347 5.653 5 C -0.133 4.133 6 C -0.117 4.117 7 C -0.031 4.031 8 N -0.122 5.122 9 C 0.090 3.910 10 C -0.249 4.249 11 C 0.009 3.991 12 N -0.096 5.096 13 C 0.111 3.889 14 C -0.585 4.585 15 H 0.085 0.915 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.013 4.013 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.157 4.157 26 C -0.109 4.109 27 C -0.077 4.077 28 N -0.172 5.172 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.191 0.809 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.470 0.212 7.119 11.067 hybrid contribution -1.861 -0.052 -1.047 2.136 sum 6.609 0.160 6.072 8.976 Atomic orbital electron populations 1.20417 0.87081 1.03985 1.02587 1.20217 0.98547 0.86470 1.01604 1.26781 0.95091 1.03928 1.13072 1.85153 1.06918 1.04477 1.68747 1.25081 0.91473 0.94507 1.02223 1.15157 1.06755 0.99628 0.90138 1.25175 0.92918 0.92676 0.92341 1.81195 1.09930 1.10844 1.10276 1.20944 0.91598 0.90713 0.87746 1.17949 0.97159 1.14360 0.95390 1.23398 0.98124 0.91195 0.86406 1.44962 1.13984 1.39860 1.10775 1.19935 0.84035 0.91042 0.93850 1.21270 1.13279 0.94721 1.29219 0.91501 1.24912 0.96934 0.95355 0.96172 1.69910 1.29695 1.11512 1.41284 0.86367 0.80410 0.80457 0.79651 1.20113 1.20750 1.19493 1.18332 0.86821 1.00906 0.95196 1.20263 0.95486 1.01745 0.94134 1.20733 0.94051 0.99634 0.99457 1.20824 0.99927 1.00998 0.93928 1.20296 0.93514 1.00338 0.96784 1.18933 0.94775 1.01015 0.92950 1.66910 1.04024 1.30629 1.15649 0.90917 0.90242 0.90482 0.80467 0.84107 0.80941 0.93192 0.93046 0.92064 0.85625 0.86118 0.86391 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.28 36.01 0.37 -0.62 16 2 C 0.06 0.93 6.26 -84.39 -0.53 0.40 16 3 C -0.25 -3.30 11.07 29.11 0.32 -2.98 16 4 S 0.09 1.20 22.54 -107.50 -2.42 -1.22 16 5 C 0.14 2.18 4.00 -14.41 -0.06 2.12 16 6 C -0.11 -1.52 5.87 -104.39 -0.61 -2.14 16 7 C 0.28 4.26 15.36 -22.48 -0.35 3.91 16 8 N -0.45 -7.37 18.54 41.84 0.78 -6.59 16 9 C 0.12 1.54 9.76 -38.37 -0.37 1.17 16 10 C -0.24 -3.82 5.93 -104.88 -0.62 -4.44 16 11 C 0.15 2.73 9.18 -16.00 -0.15 2.58 16 12 N -0.42 -8.41 2.73 -115.01 -0.31 -8.73 16 13 C 0.23 5.18 5.70 -5.19 -0.03 5.15 16 14 C -0.55 -13.72 9.39 -34.44 -0.32 -14.05 16 15 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -23.20 13.29 55.43 0.74 -22.46 16 18 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 C 0.09 1.70 6.78 -83.94 -0.57 1.13 16 23 C -0.10 -1.63 9.96 -39.41 -0.39 -2.02 16 24 C -0.12 -1.65 10.01 -39.57 -0.40 -2.04 16 25 C -0.14 -1.75 10.03 -39.56 -0.40 -2.14 16 26 C -0.09 -1.22 10.09 -39.38 -0.40 -1.62 16 27 C -0.07 -1.19 6.34 -104.91 -0.66 -1.85 16 28 N -0.46 -7.42 9.52 -7.64 -0.07 -7.50 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 32 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.17 3.16 4.30 -52.49 -0.23 2.93 16 35 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -28.09 378.33 -10.30 -38.38 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.42 Total: 3.29 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -5.26 Total: -15.74 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 1.13 Total: -45.28 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.42 Total: -1.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.09 -10.30 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096843981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.958 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds