Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99910 * 2 1 4 4 O 1.20826 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99915 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47202 * 180.02562 * 5 3 2 7 7 C 1.36850 * 119.99378 * 262.59012 * 6 5 3 8 8 H 1.08000 * 120.00542 * 29.62734 * 7 6 5 9 9 C 1.38989 * 119.99750 * 209.61682 * 7 6 5 10 10 N 1.31414 * 119.99739 * 19.17590 * 9 7 6 11 11 Si 1.86800 * 119.99985 * 199.17245 * 9 7 6 12 12 H 1.48501 * 109.47031 * 95.00182 * 11 9 7 13 13 H 1.48495 * 109.46946 * 214.99954 * 11 9 7 14 14 H 1.48491 * 109.47354 * 335.00277 * 11 9 7 15 15 C 1.34769 * 120.00281 * 82.58374 * 6 5 3 16 16 O 1.21819 * 119.99908 * 180.97377 * 15 6 5 17 17 C 1.46149 * 120.00118 * 0.98053 * 15 6 5 18 18 C 1.36946 * 125.15954 * 172.59357 * 17 15 6 19 19 C 1.36538 * 114.74543 * 179.82267 * 18 17 15 20 20 C 1.36987 * 114.73493 * 0.46272 * 19 18 17 21 21 C 1.46868 * 125.16183 * 179.72885 * 20 19 18 22 22 C 1.36458 * 125.96940 * 185.01735 * 21 20 19 23 23 C 1.40674 * 106.71588 * 179.97438 * 22 21 20 24 24 C 1.34918 * 107.09318 * 0.02562 * 23 22 21 25 25 C 1.50698 * 125.62905 * 180.02562 * 24 23 22 26 26 O 1.34266 * 108.74016 * 359.73022 * 24 23 22 27 27 S 1.75833 * 109.67182 * 359.74347 * 20 19 18 28 28 H 1.08999 * 109.47239 * 60.00177 * 1 2 3 29 29 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47214 * 299.99556 * 1 2 3 31 31 H 1.08997 * 109.47364 * 60.00245 * 5 3 2 32 32 H 1.09003 * 109.47158 * 299.99706 * 5 3 2 33 33 H 0.96994 * 120.00026 * 184.96564 * 10 9 7 34 34 H 1.08000 * 122.62808 * 0.02562 * 18 17 15 35 35 H 1.07998 * 122.63589 * 180.18754 * 19 18 17 36 36 H 1.08002 * 126.64279 * 0.02562 * 22 21 20 37 37 H 1.08000 * 126.45833 * 180.02562 * 23 22 21 38 38 H 1.08996 * 109.47317 * 89.99733 * 25 24 23 39 39 H 1.09003 * 109.46896 * 209.99752 * 25 24 23 40 40 H 1.09000 * 109.47083 * 329.98921 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.3217 3.2933 -1.1749 8 1 3.8667 2.9756 -2.1014 9 6 5.2526 4.3254 -1.1760 10 7 6.0749 4.4695 -0.1611 11 14 5.3349 5.5075 -2.6200 12 1 4.5242 6.7146 -2.3183 13 1 6.7463 5.9050 -2.8545 14 1 4.7994 4.8427 -3.8351 15 6 4.0288 3.3680 1.1579 16 8 4.3571 4.5411 1.1562 17 6 3.6861 2.7069 2.4155 18 6 3.8343 3.2563 3.6612 19 6 3.4425 2.4505 4.6914 20 6 2.9744 1.2205 4.3111 21 6 2.5003 0.1755 5.2278 22 6 2.1216 -1.0874 4.8762 23 6 1.7438 -1.7416 6.0629 24 6 1.9066 -0.8598 7.0710 25 6 1.6235 -1.1283 8.5265 26 8 2.3686 0.2945 6.5640 27 16 3.0279 1.0827 2.5590 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9556 0.7810 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 6.6751 5.2307 -0.1275 34 1 4.2271 4.2503 3.8162 35 1 3.5012 2.7570 5.7254 36 1 2.1141 -1.5043 3.8799 37 1 1.3902 -2.7583 6.1506 38 1 2.5217 -1.5179 9.0056 39 1 1.3239 -0.2013 9.0154 40 1 0.8199 -1.8599 8.6114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097081359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = -28.953414 kcal Electronic energy + Delta-G solvation = -28447.156884 eV Core-core repulsion = 24322.703948 eV Total energy + Delta-G solvation = -4124.452936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.086 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.44763 -40.19546 -38.52984 -36.85251 -35.99120 -34.14802 -33.19432 -32.59629 -32.06262 -29.44480 -28.75109 -26.83170 -26.46202 -24.77166 -23.40932 -21.90945 -21.28377 -20.60588 -20.29345 -18.60077 -17.86479 -17.39053 -16.84123 -16.49081 -16.19671 -15.83884 -15.76376 -15.38071 -14.84867 -14.54242 -14.00348 -13.76179 -13.62180 -13.34101 -13.26035 -13.24267 -12.88879 -12.85863 -12.46405 -12.26317 -12.21692 -12.06244 -11.86272 -11.81648 -11.45573 -11.35986 -11.04264 -10.76938 -10.51534 -10.38463 -10.20592 -10.18036 -9.92678 -9.36619 -9.04520 -8.41933 -8.15282 -7.41852 -7.30181 -6.23754 -4.01476 0.58128 1.67217 1.94167 2.21610 2.58414 2.66376 2.91282 3.10442 3.24220 3.27662 3.31488 3.34023 4.08196 4.55803 4.61866 4.72135 4.83945 5.00505 5.02894 5.18117 5.20323 5.24718 5.28554 5.33764 5.43235 5.49004 5.53307 5.68035 5.73318 5.77758 5.78993 5.88383 6.02720 6.07308 6.42744 6.54991 6.66018 6.71726 6.83177 7.18203 7.28852 7.88079 8.15559 8.64926 8.83627 9.28932 10.01668 10.70000 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.003549 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.224680 B = 7887.453313 C = 9231.537980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.433 3.567 4 O -0.480 6.480 5 C 0.098 3.902 6 N -0.419 5.419 7 C -0.310 4.310 8 H 0.094 0.906 9 C 0.038 3.962 10 N -0.772 5.772 11 Si 0.923 3.077 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.494 3.506 16 O -0.486 6.486 17 C -0.169 4.169 18 C -0.117 4.117 19 C -0.097 4.097 20 C -0.194 4.194 21 C 0.082 3.918 22 C -0.208 4.208 23 C -0.202 4.202 24 C -0.026 4.026 25 C -0.070 4.070 26 O -0.168 6.168 27 S 0.170 5.830 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.270 0.730 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -13.747 9.072 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.271 3.729 4 O -0.365 6.365 5 C -0.032 4.032 6 N -0.139 5.139 7 C -0.437 4.437 8 H 0.112 0.888 9 C -0.174 4.174 10 N -0.408 5.408 11 Si 0.749 3.251 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.284 3.716 16 O -0.361 6.361 17 C -0.291 4.291 18 C -0.148 4.148 19 C -0.128 4.128 20 C -0.311 4.311 21 C 0.031 3.969 22 C -0.228 4.228 23 C -0.221 4.221 24 C -0.077 4.077 25 C -0.126 4.126 26 O -0.065 6.065 27 S 0.438 5.562 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.654 -13.580 8.305 17.662 hybrid contribution 0.089 1.436 0.459 1.510 sum -7.565 -12.143 8.764 16.778 Atomic orbital electron populations 1.23175 0.77238 1.03043 1.02417 1.86504 1.22779 1.33823 1.84796 1.24742 0.93191 0.81771 0.73234 1.90703 1.66328 1.36053 1.43379 1.21440 0.87258 0.89225 1.05259 1.43094 1.57509 1.05441 1.07830 1.19420 1.20964 1.17883 0.85425 0.88846 1.25111 0.94494 0.99641 0.98188 1.70092 1.15097 1.27038 1.28564 0.85974 0.77351 0.81004 0.80727 1.20310 1.21010 1.19553 1.16230 0.87535 0.86950 0.80907 1.90720 1.46210 1.14770 1.84434 1.25445 1.07555 0.96270 0.99830 1.20224 1.02954 1.01827 0.89745 1.20378 0.99923 0.92167 1.00294 1.22722 1.13504 0.96833 0.98032 1.19406 1.03556 0.94030 0.79913 1.21735 1.07613 0.93447 1.00000 1.21394 1.08020 1.00884 0.91791 1.22477 1.04064 0.84400 0.96762 1.20265 1.02611 1.02887 0.86887 1.84019 1.65862 1.35760 1.20872 1.84278 1.61635 1.13978 0.96325 0.92191 0.88517 0.92116 0.84994 0.87830 0.91955 0.83387 0.84552 0.83335 0.83436 0.90263 0.90694 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.52 10.54 -39.26 -0.41 -5.93 16 3 C 0.43 8.15 5.33 36.00 0.19 8.34 16 4 O -0.48 -10.77 15.99 -18.75 -0.30 -11.07 16 5 C 0.10 1.88 5.55 -5.19 -0.03 1.85 16 6 N -0.42 -10.38 2.17 -117.77 -0.26 -10.64 16 7 C -0.31 -8.12 9.43 -15.03 -0.14 -8.26 16 8 H 0.09 2.30 7.90 -52.49 -0.41 1.88 16 9 C 0.04 1.03 4.46 -17.45 -0.08 0.95 16 10 N -0.77 -21.95 10.36 55.50 0.57 -21.38 16 11 Si 0.92 20.98 29.60 -169.99 -5.03 15.95 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 C 0.49 13.05 6.70 -13.09 -0.09 12.97 16 16 O -0.49 -14.56 13.18 5.08 0.07 -14.50 16 17 C -0.17 -3.77 6.22 -36.88 -0.23 -4.00 16 18 C -0.12 -2.39 9.88 -40.66 -0.40 -2.80 16 19 C -0.10 -1.74 10.12 -40.65 -0.41 -2.15 16 20 C -0.19 -3.44 6.45 -36.55 -0.24 -3.68 16 21 C 0.08 1.34 7.12 -36.73 -0.26 1.08 16 22 C -0.21 -2.94 10.62 -39.30 -0.42 -3.36 16 23 C -0.20 -2.43 10.77 -39.84 -0.43 -2.86 16 24 C -0.03 -0.32 7.32 -35.49 -0.26 -0.58 16 25 C -0.07 -0.53 10.41 36.00 0.37 -0.15 16 26 O -0.17 -2.58 10.66 4.45 0.05 -2.54 16 27 S 0.17 3.06 15.98 -107.50 -1.72 1.34 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.13 2.17 7.98 -51.93 -0.41 1.75 16 32 H 0.11 1.86 4.50 -22.07 -0.10 1.76 16 33 H 0.27 7.34 8.32 -40.82 -0.34 7.00 16 34 H 0.15 3.01 8.04 -52.49 -0.42 2.58 16 35 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -34.38 360.47 -7.24 -41.62 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.29 Total: 2.86 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.35 Total: -1.15 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.32 Total: -32.02 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.60 Total: -34.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.72 Total: 1.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.38 -7.24 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097081359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.662 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds