Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47031 * 2 1 4 4 C 1.52992 * 109.47060 * 120.00671 * 2 1 3 5 5 N 1.46503 * 109.47236 * 184.99721 * 4 2 1 6 6 C 1.35013 * 126.03761 * 124.70866 * 5 4 2 7 7 C 1.35361 * 107.73401 * 179.87978 * 6 5 4 8 8 Br 1.89104 * 126.04443 * 180.17002 * 7 6 5 9 9 C 1.39914 * 107.90758 * 0.38822 * 7 6 5 10 10 N 1.30839 * 108.21093 * 359.76305 * 9 7 6 11 11 N 1.46505 * 109.46875 * 240.00637 * 2 1 3 12 12 C 1.38853 * 120.00646 * 84.99893 * 11 2 1 13 13 C 1.39559 * 119.84677 * 179.97438 * 12 11 2 14 14 C 1.36339 * 120.16380 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.83328 * 359.97438 * 14 13 12 16 16 C 1.41142 * 120.15050 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00179 * 335.18844 * 16 15 14 18 18 C 1.39862 * 119.99548 * 155.19715 * 16 15 14 19 19 N 1.30901 * 120.00443 * 342.28826 * 18 16 15 20 20 Si 1.86803 * 119.99968 * 162.28586 * 18 16 15 21 21 H 1.48501 * 109.47245 * 94.65287 * 20 18 16 22 22 H 1.48503 * 109.47218 * 214.65385 * 20 18 16 23 23 H 1.48504 * 109.46956 * 334.65203 * 20 18 16 24 24 C 1.40886 * 119.68848 * 0.27755 * 15 14 13 25 25 C 1.36336 * 119.83300 * 359.43811 * 24 15 14 26 26 H 1.09004 * 109.47554 * 59.99631 * 1 2 3 27 27 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47429 * 299.99627 * 1 2 3 29 29 H 1.08996 * 109.47279 * 304.99795 * 4 2 1 30 30 H 1.09002 * 109.47638 * 64.99617 * 4 2 1 31 31 H 1.08002 * 126.13197 * 359.97438 * 6 5 4 32 32 H 1.08007 * 125.89090 * 179.77992 * 9 7 6 33 33 H 0.97003 * 119.99738 * 264.99791 * 11 2 1 34 34 H 1.08005 * 119.91927 * 359.97438 * 13 12 11 35 35 H 1.08003 * 120.08637 * 179.97438 * 14 13 12 36 36 H 0.97003 * 120.00170 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.07487 * 179.70336 * 24 15 14 38 38 H 1.08004 * 119.91819 * 180.27851 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 3.5000 -0.6181 1.3108 6 6 4.2187 -0.1272 2.3431 7 6 5.5280 -0.2084 2.0094 8 35 6.9860 0.3336 3.0848 9 6 5.6115 -0.7596 0.7261 10 7 4.3968 -1.0053 0.3067 11 7 2.0183 -0.6905 -1.1963 12 6 2.1509 0.0022 -2.3924 13 6 2.6168 -0.6588 -3.5298 14 6 2.7490 0.0150 -4.7077 15 6 2.4134 1.3817 -4.7749 16 6 2.5471 2.0855 -5.9910 17 1 3.2475 1.7436 -6.7386 18 6 1.7728 3.2259 -6.2277 19 7 0.7009 3.4498 -5.5104 20 14 2.2681 4.4297 -7.5675 21 1 1.5428 4.1013 -8.8210 22 1 1.9241 5.8109 -7.1439 23 1 3.7313 4.3340 -7.8026 24 6 1.9487 2.0437 -3.6214 25 6 1.8160 1.3558 -2.4518 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -0.2620 2.1369 30 1 1.7515 -1.7716 1.2054 31 1 3.8203 0.2593 3.2695 32 1 6.5218 -0.9498 0.1767 33 1 2.2490 -1.6317 -1.1528 34 1 2.8734 -1.7066 -3.4768 35 1 3.1102 -0.4977 -5.5871 36 1 0.1637 4.2406 -5.6748 37 1 1.6942 3.0923 -3.6647 38 1 1.4556 1.8608 -1.5677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097095683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = 106.010914 kcal Electronic energy + Delta-G solvation = -21789.901926 eV Core-core repulsion = 18487.122841 eV Total energy + Delta-G solvation = -3302.779085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 349.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32554 -38.21516 -36.27226 -33.75065 -32.56451 -31.66476 -30.61133 -29.44155 -28.95274 -27.99697 -26.22489 -24.32323 -22.11433 -21.35894 -21.02013 -20.46377 -19.58981 -17.36933 -17.16788 -16.31170 -15.85267 -14.94841 -14.76260 -14.47346 -13.96202 -13.79990 -13.45239 -13.17442 -13.11830 -12.62263 -12.51852 -12.36020 -11.98734 -11.85119 -11.59107 -11.39868 -11.11752 -11.00718 -10.97366 -10.82336 -10.74214 -10.43216 -10.15323 -9.65609 -9.58144 -9.24312 -9.19587 -8.53113 -8.46862 -7.43968 -6.59860 -6.32675 -3.98397 1.54432 1.67851 2.53029 2.55543 2.94922 3.14816 3.17058 3.22422 3.40011 4.08014 4.09744 4.39173 4.54922 4.76699 4.80970 4.93169 5.00183 5.35792 5.44948 5.49350 5.51727 5.75895 5.88805 6.03167 6.29999 6.31461 6.36661 6.39878 6.74712 6.96940 6.97806 7.24749 7.40412 7.52488 7.59960 7.73881 7.88902 8.19651 8.34062 8.54177 8.75301 8.85065 9.10794 9.20195 10.41556 Molecular weight = 349.05amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002611 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.253230 B =10720.279697 C =11804.693545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.077 0.923 4 C 0.123 3.877 5 N -0.356 5.356 6 C 0.086 3.914 7 C -0.243 4.243 8 Br -0.031 7.031 9 C 0.067 3.933 10 N -0.247 5.247 11 N -0.742 5.742 12 C 0.106 3.894 13 C -0.156 4.156 14 C -0.185 4.185 15 C 0.074 3.926 16 C -0.468 4.468 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.810 5.810 20 Si 0.901 3.099 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.124 4.124 25 C -0.168 4.168 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.387 0.613 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -6.143 20.141 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.042 3.958 3 H 0.095 0.905 4 C 0.001 3.999 5 N -0.137 5.137 6 C -0.064 4.064 7 C -0.334 4.334 8 Br 0.051 6.949 9 C -0.121 4.121 10 N -0.067 5.067 11 N -0.376 5.376 12 C 0.009 3.991 13 C -0.178 4.178 14 C -0.206 4.206 15 C 0.071 3.929 16 C -0.499 4.499 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.438 5.438 20 Si 0.726 3.274 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.144 4.144 25 C -0.190 4.190 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.196 0.804 32 H 0.204 0.796 33 H 0.220 0.780 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.727 -6.102 19.651 21.113 hybrid contribution 0.339 0.557 -0.132 0.665 sum 5.066 -5.545 19.519 20.914 Atomic orbital electron populations 1.22291 0.95616 1.02204 1.02583 1.20810 0.93433 0.97070 0.84455 0.90522 1.22295 0.73582 1.03151 1.00834 1.48728 1.06821 1.46640 1.11466 1.22368 0.90831 0.98749 0.94460 1.21727 0.92379 1.20024 0.99294 1.96581 1.40756 1.90578 1.66957 1.23903 0.96853 0.98334 0.93056 1.77731 0.98086 1.20808 1.10027 1.43715 1.76627 1.11054 1.06244 1.17238 1.04637 0.91797 0.85453 1.19766 1.07465 0.97567 0.93010 1.20549 1.09508 0.94592 0.95910 1.17468 0.91973 0.90511 0.92978 1.19353 1.20223 1.08459 1.01868 0.91059 1.25771 0.93494 0.97963 0.96755 1.69857 1.11017 1.25523 1.37376 0.86437 0.80152 0.79757 0.81085 1.19905 1.20337 1.18691 1.20894 1.02766 0.99570 0.91126 1.20060 1.08325 0.92802 0.97775 0.90807 0.92520 0.92661 0.87647 0.89162 0.80396 0.79591 0.77974 0.89710 0.89207 0.91472 0.86637 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.40 37.16 0.35 -1.63 16 2 C 0.15 1.99 2.48 -67.93 -0.17 1.82 16 3 H 0.08 1.19 6.45 -51.93 -0.34 0.85 16 4 C 0.12 1.18 6.04 -4.04 -0.02 1.16 16 5 N -0.36 -4.25 3.68 -61.34 -0.23 -4.47 16 6 C 0.09 0.90 11.41 -17.18 -0.20 0.70 16 7 C -0.24 -2.84 6.53 -39.98 -0.26 -3.10 16 8 Br -0.03 -0.32 34.08 -68.01 -2.32 -2.64 16 9 C 0.07 0.88 12.01 -17.35 -0.21 0.67 16 10 N -0.25 -3.63 11.33 30.64 0.35 -3.28 16 11 N -0.74 -12.36 4.18 -52.04 -0.22 -12.58 16 12 C 0.11 2.27 6.65 -83.69 -0.56 1.72 16 13 C -0.16 -3.56 9.82 -39.77 -0.39 -3.95 16 14 C -0.19 -4.68 9.74 -39.26 -0.38 -5.07 16 15 C 0.07 2.02 5.57 -106.79 -0.59 1.42 16 16 C -0.47 -12.95 9.03 -37.87 -0.34 -13.29 16 17 H 0.07 1.91 7.90 -52.49 -0.41 1.50 16 18 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 19 N -0.81 -21.76 10.98 55.54 0.61 -21.15 16 20 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 24 C -0.12 -3.27 8.63 -39.27 -0.34 -3.61 16 25 C -0.17 -3.91 8.74 -39.77 -0.35 -4.26 16 26 H 0.07 1.11 7.65 -51.93 -0.40 0.71 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.19 2.10 8.06 -52.48 -0.42 1.67 16 33 H 0.39 6.17 8.45 -40.82 -0.34 5.82 16 34 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 37 H 0.12 3.19 6.19 -52.49 -0.32 2.86 16 38 H 0.08 1.80 6.04 -52.48 -0.32 1.48 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -30.28 342.04 -9.88 -40.15 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.65 Total: 9.82 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.55 Total: -25.53 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.51 Total: -41.48 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.32 Total: -2.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.28 -9.88 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097095683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.165 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds