Wall clock time and date at job start Tue Mar 31 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47031 * 2 1 4 4 C 1.52992 * 109.47060 * 120.00671 * 2 1 3 5 5 N 1.46503 * 109.47236 * 184.99721 * 4 2 1 6 6 C 1.35013 * 126.03761 * 124.70866 * 5 4 2 7 7 C 1.35361 * 107.73401 * 179.87978 * 6 5 4 8 8 Br 1.89104 * 126.04443 * 180.17002 * 7 6 5 9 9 C 1.39914 * 107.90758 * 0.38822 * 7 6 5 10 10 N 1.30839 * 108.21093 * 359.76305 * 9 7 6 11 11 N 1.46505 * 109.46875 * 240.00637 * 2 1 3 12 12 C 1.38853 * 120.00646 * 84.99893 * 11 2 1 13 13 C 1.39559 * 119.84677 * 179.97438 * 12 11 2 14 14 C 1.36339 * 120.16380 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.83328 * 359.97438 * 14 13 12 16 16 C 1.41142 * 120.15050 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00179 * 335.18844 * 16 15 14 18 18 C 1.39862 * 119.99548 * 155.19715 * 16 15 14 19 19 N 1.30901 * 120.00443 * 342.28826 * 18 16 15 20 20 Si 1.86803 * 119.99968 * 162.28586 * 18 16 15 21 21 H 1.48501 * 109.47245 * 94.65287 * 20 18 16 22 22 H 1.48503 * 109.47218 * 214.65385 * 20 18 16 23 23 H 1.48504 * 109.46956 * 334.65203 * 20 18 16 24 24 C 1.40886 * 119.68848 * 0.27755 * 15 14 13 25 25 C 1.36336 * 119.83300 * 359.43811 * 24 15 14 26 26 H 1.09004 * 109.47554 * 59.99631 * 1 2 3 27 27 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47429 * 299.99627 * 1 2 3 29 29 H 1.08996 * 109.47279 * 304.99795 * 4 2 1 30 30 H 1.09002 * 109.47638 * 64.99617 * 4 2 1 31 31 H 1.08002 * 126.13197 * 359.97438 * 6 5 4 32 32 H 1.08007 * 125.89090 * 179.77992 * 9 7 6 33 33 H 0.97003 * 119.99738 * 264.99791 * 11 2 1 34 34 H 1.08005 * 119.91927 * 359.97438 * 13 12 11 35 35 H 1.08003 * 120.08637 * 179.97438 * 14 13 12 36 36 H 0.97003 * 120.00170 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.07487 * 179.70336 * 24 15 14 38 38 H 1.08004 * 119.91819 * 180.27851 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 3.5000 -0.6181 1.3108 6 6 4.2187 -0.1272 2.3431 7 6 5.5280 -0.2084 2.0094 8 35 6.9860 0.3336 3.0848 9 6 5.6115 -0.7596 0.7261 10 7 4.3968 -1.0053 0.3067 11 7 2.0183 -0.6905 -1.1963 12 6 2.1509 0.0022 -2.3924 13 6 2.6168 -0.6588 -3.5298 14 6 2.7490 0.0150 -4.7077 15 6 2.4134 1.3817 -4.7749 16 6 2.5471 2.0855 -5.9910 17 1 3.2475 1.7436 -6.7386 18 6 1.7728 3.2259 -6.2277 19 7 0.7009 3.4498 -5.5104 20 14 2.2681 4.4297 -7.5675 21 1 1.5428 4.1013 -8.8210 22 1 1.9241 5.8109 -7.1439 23 1 3.7313 4.3340 -7.8026 24 6 1.9487 2.0437 -3.6214 25 6 1.8160 1.3558 -2.4518 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -0.2620 2.1369 30 1 1.7515 -1.7716 1.2054 31 1 3.8203 0.2593 3.2695 32 1 6.5218 -0.9498 0.1767 33 1 2.2490 -1.6317 -1.1528 34 1 2.8734 -1.7066 -3.4768 35 1 3.1102 -0.4977 -5.5871 36 1 0.1637 4.2406 -5.6748 37 1 1.6942 3.0923 -3.6647 38 1 1.4556 1.8608 -1.5677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097095683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:27 Heat of formation + Delta-G solvation = 89.250237 kcal Electronic energy + Delta-G solvation = -21790.628723 eV Core-core repulsion = 18487.122841 eV Total energy + Delta-G solvation = -3303.505883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 349.049 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20531 -39.88488 -37.69569 -35.43580 -33.86557 -32.57902 -31.94699 -31.32056 -29.86051 -29.70651 -27.12992 -26.12970 -23.52137 -22.84077 -22.03664 -21.76057 -21.01671 -19.14591 -18.28853 -17.82212 -17.06275 -16.71037 -15.91020 -15.66324 -15.45743 -14.85009 -14.76886 -14.54503 -14.17734 -14.09324 -13.95138 -13.68555 -13.52403 -13.22667 -13.06223 -12.84116 -12.73048 -12.43920 -12.31546 -12.15115 -11.89097 -11.76365 -11.56042 -11.15275 -11.07068 -10.98456 -10.50200 -10.24812 -9.38272 -9.35905 -8.53654 -8.09821 -5.98102 0.72151 0.84169 1.12671 1.20520 1.38686 1.51650 1.59878 1.61534 1.72495 2.27364 2.86102 2.88686 3.47537 3.81741 3.87593 3.89747 4.06194 4.25064 4.37023 4.46876 4.51679 4.57969 4.62534 4.67152 4.83966 5.01602 5.04584 5.18274 5.29711 5.37883 5.40839 5.47735 5.71625 5.82289 5.96241 5.98435 6.20074 6.41625 6.61272 6.69806 6.91091 7.10035 7.18738 7.35257 8.49568 Molecular weight = 349.05amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002611 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.253230 B =10720.279697 C =11804.693545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.055 0.945 4 C 0.126 3.874 5 N -0.360 5.360 6 C 0.099 3.901 7 C -0.260 4.260 8 Br -0.022 7.022 9 C 0.055 3.945 10 N -0.293 5.293 11 N -0.731 5.731 12 C 0.134 3.866 13 C -0.168 4.168 14 C -0.195 4.195 15 C 0.033 3.967 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.032 3.968 19 N -0.843 5.843 20 Si 0.974 3.026 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.142 4.142 25 C -0.176 4.176 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.218 0.782 32 H 0.191 0.809 33 H 0.394 0.606 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.281 0.719 37 H 0.095 0.905 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -6.606 22.713 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.073 0.927 4 C 0.005 3.995 5 N -0.141 5.141 6 C -0.052 4.052 7 C -0.351 4.351 8 Br 0.060 6.940 9 C -0.133 4.133 10 N -0.113 5.113 11 N -0.365 5.365 12 C 0.034 3.966 13 C -0.190 4.190 14 C -0.215 4.215 15 C 0.030 3.970 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.471 5.471 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.162 4.162 25 C -0.198 4.198 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.170 0.830 30 H 0.124 0.876 31 H 0.235 0.765 32 H 0.208 0.792 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.239 -6.601 22.270 23.611 hybrid contribution 0.495 0.562 -0.708 1.031 sum 4.734 -6.039 21.562 22.887 Atomic orbital electron populations 1.22189 0.94116 1.03088 1.02510 1.21024 0.94436 0.96103 0.84587 0.92736 1.22488 0.72467 1.04098 1.00396 1.48901 1.07379 1.46498 1.11307 1.22980 0.90270 0.96877 0.95032 1.21908 0.93503 1.20619 0.99096 1.96584 1.40539 1.90472 1.66357 1.24132 0.96876 0.98375 0.93963 1.77626 0.99076 1.22637 1.11968 1.43817 1.75521 1.11318 1.05830 1.17300 1.01193 0.91199 0.86907 1.20024 1.07593 0.98749 0.92680 1.20734 1.09442 0.94210 0.97131 1.17763 0.94004 0.91699 0.93528 1.19564 1.21497 1.10552 1.02417 0.91770 1.26576 0.92979 0.99145 0.99244 1.69918 1.11833 1.26290 1.39094 0.85321 0.79559 0.77412 0.78108 1.18966 1.19191 1.18708 1.20824 1.04100 0.98984 0.92268 1.20187 1.08562 0.93688 0.97403 0.94538 0.91135 0.89109 0.82968 0.87552 0.76550 0.79192 0.77142 0.87262 0.89020 0.90866 0.88659 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.40 71.98 0.68 -2.61 16 2 C 0.15 3.43 2.48 44.99 0.11 3.54 16 3 H 0.05 1.57 6.45 -2.39 -0.02 1.55 16 4 C 0.13 1.87 6.04 86.38 0.52 2.39 16 5 N -0.36 -7.47 3.68 -347.98 -1.28 -8.75 16 6 C 0.10 1.72 11.41 83.54 0.95 2.67 16 7 C -0.26 -5.56 6.53 22.01 0.14 -5.42 16 8 Br -0.02 -0.42 34.08 -20.37 -0.69 -1.11 16 9 C 0.05 1.39 12.01 85.25 1.02 2.41 16 10 N -0.29 -8.18 11.33 -56.99 -0.65 -8.82 16 11 N -0.73 -23.05 4.18 -318.56 -1.33 -24.38 16 12 C 0.13 5.72 6.65 38.67 0.26 5.98 16 13 C -0.17 -7.68 9.82 22.15 0.22 -7.46 16 14 C -0.20 -10.18 9.74 22.48 0.22 -9.96 16 15 C 0.03 1.89 5.57 -21.27 -0.12 1.77 16 16 C -0.51 -29.58 9.03 23.38 0.21 -29.37 16 17 H 0.06 3.64 7.90 -2.91 -0.02 3.62 16 18 C 0.03 1.73 5.13 85.22 0.44 2.17 16 19 N -0.84 -46.97 10.98 21.81 0.24 -46.73 16 20 Si 0.97 41.23 29.59 68.60 2.03 43.26 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 C -0.14 -7.83 8.63 22.47 0.19 -7.64 16 25 C -0.18 -8.34 8.74 22.15 0.19 -8.14 16 26 H 0.04 1.04 7.65 -2.39 -0.02 1.02 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.15 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.39 11.64 8.45 -92.71 -0.78 10.86 16 34 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 37 H 0.10 5.56 6.19 -2.91 -0.02 5.54 16 38 H 0.10 4.36 6.04 -2.91 -0.02 4.34 16 Total: -1.00 -70.07 342.04 3.66 -66.40 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.30 Total: 29.80 kcal Atomic # 6 Polarization: -54.71 SS G_CDS: 5.04 Total: -49.67 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.02 Total: -88.68 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -0.69 Total: -1.11 kcal Total: -70.07 3.66 -66.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097095683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.654 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds