Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47068 * 2 1 4 4 C 1.52994 * 109.47102 * 239.99807 * 2 1 3 5 5 N 1.46493 * 109.47456 * 174.99776 * 4 2 1 6 6 C 1.35018 * 126.03931 * 124.71139 * 5 4 2 7 7 C 1.35358 * 107.73608 * 179.87984 * 6 5 4 8 8 Br 1.89101 * 126.04835 * 180.17037 * 7 6 5 9 9 C 1.39916 * 107.90740 * 0.38751 * 7 6 5 10 10 N 1.30843 * 108.21131 * 359.76093 * 9 7 6 11 11 N 1.46498 * 109.47063 * 119.99649 * 2 1 3 12 12 C 1.38853 * 120.00232 * 275.00003 * 11 2 1 13 13 C 1.39570 * 119.83989 * 0.24862 * 12 11 2 14 14 C 1.36343 * 120.15913 * 180.25905 * 13 12 11 15 15 C 1.40889 * 119.83518 * 359.49263 * 14 13 12 16 16 C 1.41135 * 120.15700 * 180.27277 * 15 14 13 17 17 H 1.08002 * 120.00202 * 154.53280 * 16 15 14 18 18 C 1.39872 * 119.99817 * 334.54291 * 16 15 14 19 19 N 1.30895 * 119.99806 * 343.04723 * 18 16 15 20 20 Si 1.86802 * 119.99630 * 163.04604 * 18 16 15 21 21 H 1.48499 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46711 * 119.99872 * 20 18 16 23 23 H 1.48493 * 109.47186 * 239.99557 * 20 18 16 24 24 C 1.40885 * 119.68814 * 0.25981 * 15 14 13 25 25 C 1.36330 * 119.83846 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47428 * 300.00338 * 1 2 3 28 28 H 1.08996 * 109.47638 * 59.99963 * 1 2 3 29 29 H 1.09003 * 109.47111 * 295.00282 * 4 2 1 30 30 H 1.09003 * 109.47188 * 54.99540 * 4 2 1 31 31 H 1.08001 * 126.13208 * 359.97438 * 6 5 4 32 32 H 1.08002 * 125.89259 * 179.73942 * 9 7 6 33 33 H 0.97001 * 119.99552 * 95.00152 * 11 2 1 34 34 H 1.07994 * 119.92486 * 0.02562 * 13 12 11 35 35 H 1.07994 * 120.08134 * 179.77221 * 14 13 12 36 36 H 0.97009 * 119.99636 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.07859 * 180.02562 * 24 15 14 38 38 H 1.08007 * 119.92195 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.4999 -0.6179 -1.3110 6 6 4.3661 -1.6494 -1.4040 7 6 5.6177 -1.1352 -1.4377 8 35 7.2241 -2.1243 -1.5684 9 6 5.5130 0.2575 -1.3538 10 7 4.2443 0.5684 -1.2778 11 7 2.0183 -0.6905 1.1962 12 6 2.1509 0.0022 2.3923 13 6 1.8131 1.3551 2.4524 14 6 1.9458 2.0429 3.6222 15 6 2.4151 1.3820 4.7745 16 6 2.5496 2.0860 5.9903 17 1 2.5018 1.5553 6.9298 18 6 2.7444 3.4710 5.9786 19 7 3.1307 4.0682 4.8798 20 14 2.4534 4.4682 7.5311 21 1 2.0257 3.5632 8.6280 22 1 3.7104 5.1568 7.9199 23 1 1.3936 5.4775 7.2798 24 6 2.7492 0.0150 4.7076 25 6 2.6161 -0.6590 3.5300 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.7515 -1.7715 -1.2055 30 1 1.6053 -0.2618 -2.1369 31 1 4.1067 -2.6970 -1.4457 32 1 6.3372 0.9555 -1.3518 33 1 2.2490 -1.6317 1.1526 34 1 1.4493 1.8593 1.5694 35 1 1.6875 3.0905 3.6664 36 1 3.2662 5.0288 4.8718 37 1 3.1092 -0.4980 5.5872 38 1 2.8715 -1.7071 3.4772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097095684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = 104.350072 kcal Electronic energy + Delta-G solvation = -21819.533014 eV Core-core repulsion = 18516.681910 eV Total energy + Delta-G solvation = -3302.851105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 349.049 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30044 -38.27058 -36.30269 -33.76896 -32.56445 -31.60205 -30.71763 -29.46483 -28.93050 -28.05450 -26.22797 -24.35964 -22.20980 -21.34431 -20.96968 -20.61018 -19.44997 -17.43389 -17.20125 -16.46060 -15.50075 -15.20510 -14.89510 -14.45684 -13.95226 -13.77678 -13.37851 -13.23955 -13.13224 -12.72158 -12.52975 -12.37526 -12.00833 -11.85161 -11.66156 -11.38643 -11.14810 -11.03729 -10.93426 -10.83719 -10.73772 -10.46135 -10.11808 -9.68432 -9.55469 -9.28275 -9.23233 -8.60843 -8.43859 -7.48215 -6.62325 -6.39685 -4.03159 1.57971 1.72377 2.54442 2.58005 2.91466 3.10990 3.16341 3.21669 3.35353 4.04606 4.07421 4.35635 4.58491 4.74214 4.79280 4.91731 5.11298 5.34592 5.41550 5.49717 5.57617 5.76128 5.84113 6.05815 6.24858 6.30582 6.33773 6.38943 6.77642 6.91033 6.93480 7.20831 7.36258 7.51987 7.54176 7.69240 7.83252 8.16275 8.27628 8.47595 8.65267 8.79358 9.07436 9.15638 10.39463 Molecular weight = 349.05amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002799 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.222178 B = 9999.960693 C =11120.177674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 H 0.090 0.910 4 C 0.125 3.875 5 N -0.350 5.350 6 C 0.093 3.907 7 C -0.243 4.243 8 Br -0.030 7.030 9 C 0.075 3.925 10 N -0.267 5.267 11 N -0.753 5.753 12 C 0.095 3.905 13 C -0.160 4.160 14 C -0.124 4.124 15 C 0.076 3.924 16 C -0.468 4.468 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.807 5.807 20 Si 0.902 3.098 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.274 1.274 24 C -0.187 4.187 25 C -0.157 4.157 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.380 0.620 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.275 0.725 37 H 0.090 0.910 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -11.012 -16.496 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.039 3.961 3 H 0.108 0.892 4 C 0.003 3.997 5 N -0.131 5.131 6 C -0.058 4.058 7 C -0.334 4.334 8 Br 0.052 6.948 9 C -0.113 4.113 10 N -0.088 5.088 11 N -0.388 5.388 12 C -0.001 4.001 13 C -0.182 4.182 14 C -0.144 4.144 15 C 0.073 3.927 16 C -0.499 4.499 17 H 0.090 0.910 18 C -0.141 4.141 19 N -0.435 5.435 20 Si 0.727 3.273 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.200 1.200 24 C -0.207 4.207 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.195 0.805 32 H 0.205 0.795 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.595 -10.017 -16.610 19.462 hybrid contribution 0.338 -0.323 0.673 0.820 sum 1.933 -10.340 -15.937 19.096 Atomic orbital electron populations 1.22272 0.95664 1.02023 1.02598 1.20897 0.93357 0.98057 0.83755 0.89196 1.22257 0.73961 1.02970 1.00519 1.48606 1.06555 1.03734 1.54169 1.22324 0.88846 0.94899 0.99708 1.21695 0.91970 0.94773 1.24960 1.96580 1.28168 1.72061 1.97966 1.23823 0.95028 0.93715 0.98758 1.77530 1.03401 1.05353 1.22479 1.43798 1.77376 1.10632 1.06966 1.17246 1.05890 0.91763 0.85215 1.20089 1.07750 0.92440 0.97881 1.20931 1.01284 0.99808 0.92332 1.17491 0.90839 0.90929 0.93406 1.19400 1.44962 0.91871 0.93641 0.90964 1.25792 0.92608 0.98425 0.97239 1.69864 1.34098 1.11158 1.28337 0.86369 0.78598 0.79791 0.82516 1.18656 1.20259 1.19981 1.20533 1.08161 0.96060 0.95991 1.19772 1.07646 0.97402 0.93115 0.92680 0.90970 0.92482 0.88359 0.88544 0.80453 0.79519 0.78805 0.89426 0.86464 0.91385 0.89150 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.40 37.16 0.35 -1.58 16 2 C 0.15 1.97 2.37 -67.94 -0.16 1.81 16 3 H 0.09 1.49 6.37 -51.93 -0.33 1.16 16 4 C 0.12 1.24 6.00 -4.05 -0.02 1.21 16 5 N -0.35 -4.37 3.61 -61.34 -0.22 -4.59 16 6 C 0.09 1.04 11.41 -17.18 -0.20 0.84 16 7 C -0.24 -3.02 6.53 -39.98 -0.26 -3.28 16 8 Br -0.03 -0.33 34.08 -68.01 -2.32 -2.65 16 9 C 0.07 1.03 12.01 -17.34 -0.21 0.82 16 10 N -0.27 -4.09 12.34 30.64 0.38 -3.71 16 11 N -0.75 -12.20 5.14 -52.04 -0.27 -12.47 16 12 C 0.10 2.03 6.65 -83.69 -0.56 1.48 16 13 C -0.16 -3.73 8.73 -39.77 -0.35 -4.07 16 14 C -0.12 -3.26 8.63 -39.26 -0.34 -3.60 16 15 C 0.08 2.08 5.57 -106.79 -0.59 1.49 16 16 C -0.47 -12.86 9.03 -37.87 -0.34 -13.20 16 17 H 0.07 1.93 7.90 -52.49 -0.41 1.51 16 18 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 19 N -0.81 -21.77 10.96 55.54 0.61 -21.17 16 20 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 C -0.19 -4.70 9.74 -39.27 -0.38 -5.08 16 25 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.03 7.63 -51.93 -0.40 0.64 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.38 5.52 8.60 -40.82 -0.35 5.17 16 34 H 0.09 1.89 6.03 -52.49 -0.32 1.57 16 35 H 0.12 3.23 6.19 -52.49 -0.32 2.90 16 36 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -30.47 343.81 -9.86 -40.33 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.65 Total: 9.90 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.54 Total: -25.25 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.50 Total: -41.93 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.47 -9.86 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097095684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.677 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds