Wall clock time and date at job start Tue Mar 31 2020 04:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 117.00289 * 2 1 4 4 C 1.38772 * 120.03164 * 180.02562 * 3 2 1 5 5 C 1.38181 * 120.05414 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.94055 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46790 * 90.00262 * 6 5 4 8 8 C 1.53008 * 109.46961 * 179.97438 * 7 6 5 9 9 C 1.53072 * 109.44152 * 64.79106 * 8 7 6 10 10 C 1.53191 * 109.29477 * 181.23853 * 9 8 7 11 11 N 1.46934 * 108.89273 * 305.58196 * 10 9 8 12 12 C 1.34779 * 120.62601 * 233.55707 * 11 10 9 13 13 O 1.21686 * 120.00337 * 354.74939 * 12 11 10 14 14 C 1.46373 * 119.99553 * 174.74174 * 12 11 10 15 15 H 1.08005 * 119.99942 * 5.60649 * 14 12 11 16 16 C 1.40048 * 119.99921 * 185.59755 * 14 12 11 17 17 N 1.30674 * 120.00304 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99849 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47683 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47106 * 120.00403 * 18 16 14 21 21 H 1.48502 * 109.46930 * 239.99979 * 18 16 14 22 22 C 1.46926 * 118.73697 * 53.53560 * 11 10 9 23 23 C 1.53035 * 109.45995 * 185.00150 * 8 7 6 24 24 C 1.38174 * 120.11046 * 0.22768 * 5 4 3 25 25 C 1.38770 * 120.05236 * 359.49573 * 24 5 4 26 26 O 1.35896 * 120.03134 * 180.27586 * 25 24 5 27 27 C 1.42890 * 117.00662 * 180.25235 * 26 25 24 28 28 C 1.38635 * 120.02280 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47286 * 300.00265 * 1 2 3 30 30 H 1.09000 * 109.47233 * 60.00781 * 1 2 3 31 31 H 1.09003 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.97025 * 0.02562 * 4 3 2 33 33 H 1.08990 * 109.47127 * 330.00072 * 6 5 4 34 34 H 1.08997 * 109.46516 * 209.99651 * 6 5 4 35 35 H 1.09001 * 109.47649 * 59.99601 * 7 6 5 36 36 H 1.09006 * 109.47253 * 299.99251 * 7 6 5 37 37 H 1.09002 * 109.45586 * 304.96603 * 8 7 6 38 38 H 1.08997 * 109.38712 * 61.36149 * 9 8 7 39 39 H 1.08999 * 109.62576 * 301.25307 * 9 8 7 40 40 H 1.08994 * 109.59009 * 185.72359 * 10 9 8 41 41 H 1.08999 * 109.58886 * 65.43570 * 10 9 8 42 42 H 0.96993 * 120.00281 * 179.97438 * 17 16 14 43 43 H 1.08991 * 109.58898 * 66.18331 * 22 11 10 44 44 H 1.09002 * 109.58153 * 186.46406 * 22 11 10 45 45 H 1.08997 * 109.50163 * 58.67006 * 23 8 7 46 46 H 1.09003 * 109.49586 * 298.57680 * 23 8 7 47 47 H 1.07996 * 119.97015 * 179.72194 * 24 5 4 48 48 H 1.09003 * 109.47513 * 299.99792 * 27 26 25 49 49 H 1.08998 * 109.47777 * 59.99780 * 27 26 25 50 50 H 1.09003 * 109.47258 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.05690 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2842 -0.0005 5 6 4.0596 2.5151 0.0000 6 6 5.5647 2.5917 0.0000 7 6 6.0739 2.6184 -1.4425 8 6 7.6020 2.6968 -1.4426 9 6 8.1778 1.4185 -0.8282 10 6 9.7065 1.5137 -0.8016 11 7 10.1887 1.8048 -2.1587 12 6 11.1234 1.0248 -2.7372 13 8 11.6453 0.1277 -2.1021 14 6 11.5104 1.2569 -4.1296 15 1 11.1152 2.1073 -4.6654 16 6 12.3934 0.3763 -4.7671 17 7 12.8713 -0.6528 -4.1190 18 14 12.8879 0.6729 -6.5438 19 1 12.2142 1.8967 -7.0476 20 1 14.3601 0.8499 -6.6250 21 1 12.4830 -0.4918 -7.3713 22 6 9.6324 2.9618 -2.8732 23 6 8.1046 2.8491 -2.8800 24 6 3.3098 3.6757 0.0058 25 6 1.9238 3.6076 0.0006 26 8 1.1868 4.7494 0.0006 27 6 -0.2347 4.6041 0.0007 28 6 1.2914 2.3739 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0199 0.3784 -0.0014 33 1 5.9728 1.7212 0.5134 34 1 5.8822 3.4988 0.5142 35 1 5.6657 3.4889 -1.9560 36 1 5.7564 1.7112 -1.9568 37 1 7.9214 3.5564 -0.8533 38 1 7.8771 0.5607 -1.4298 39 1 7.8030 1.2998 0.1884 40 1 10.1257 0.5674 -0.4600 41 1 10.0111 2.3133 -0.1264 42 1 13.4825 -1.2629 -4.5606 43 1 9.9287 3.8806 -2.3674 44 1 10.0047 2.9722 -3.8976 45 1 7.6754 3.7481 -3.3222 46 1 7.8066 1.9781 -3.4637 47 1 3.8029 4.6365 0.0108 48 1 -0.5440 4.0561 -0.8893 49 1 -0.5440 4.0560 0.8906 50 1 -0.7006 5.5896 0.0012 51 1 0.2128 2.3189 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:53 Heat of formation + Delta-G solvation = -102.280087 kcal Electronic energy + Delta-G solvation = -30015.134528 eV Core-core repulsion = 25879.559799 eV Total energy + Delta-G solvation = -4135.574728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.84826 -39.12824 -38.82509 -37.52174 -36.14208 -33.80365 -32.49945 -31.47831 -30.59157 -30.46686 -28.90668 -28.07134 -26.95017 -26.24909 -24.82986 -22.71151 -22.55083 -22.08658 -20.81730 -20.07003 -18.77180 -18.52076 -17.31294 -16.53188 -16.32955 -16.31075 -16.26004 -15.84135 -15.64607 -15.08124 -14.55504 -14.49625 -14.22116 -14.00483 -13.84693 -13.79004 -13.52476 -12.99146 -12.85053 -12.74695 -12.52739 -12.38017 -12.08402 -11.96800 -11.90949 -11.57878 -11.50607 -11.45108 -11.44481 -11.06483 -11.00661 -10.84740 -10.68535 -10.61318 -10.34145 -10.30247 -10.16444 -9.79636 -9.62006 -8.83237 -8.78488 -8.24593 -7.52078 -7.13033 -6.16196 -4.60265 1.05753 1.24348 2.88054 2.93537 3.14530 3.22758 3.26815 3.47204 4.11892 4.41447 4.53789 4.59653 4.62062 4.66242 4.70295 4.73450 4.78804 4.91713 4.92239 4.94108 5.03285 5.06943 5.07825 5.23695 5.24290 5.37179 5.56607 5.63324 5.72174 5.79440 5.83265 5.91292 5.96443 5.97792 6.00530 6.02987 6.15587 6.23932 6.34789 6.36715 6.41185 6.49978 6.56096 6.63131 6.64241 6.68692 6.84682 6.94036 7.19279 7.49699 7.71437 8.20137 8.42356 9.06132 9.50513 10.62121 10.81096 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.001873 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.985956 B =14942.343443 C =15255.876294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.166 3.834 4 C -0.184 4.184 5 C 0.003 3.997 6 C -0.084 4.084 7 C -0.106 4.106 8 C -0.083 4.083 9 C -0.127 4.127 10 C 0.120 3.880 11 N -0.642 5.642 12 C 0.560 3.440 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.905 3.095 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.121 3.879 23 C -0.128 4.128 24 C -0.186 4.186 25 C 0.164 3.836 26 O -0.315 6.315 27 C 0.028 3.972 28 C -0.305 4.305 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.267 0.733 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.132 0.868 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.567 8.727 7.823 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.203 4.203 5 C 0.003 3.997 6 C -0.121 4.121 7 C -0.144 4.144 8 C -0.101 4.101 9 C -0.166 4.166 10 C -0.004 4.004 11 N -0.380 5.380 12 C 0.365 3.635 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.167 4.167 24 C -0.204 4.204 25 C 0.119 3.881 26 O -0.228 6.228 27 C -0.068 4.068 28 C -0.324 4.324 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.150 0.850 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.119 0.881 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -27.007 8.057 8.173 29.345 hybrid contribution -0.561 0.173 -0.907 1.080 sum -27.568 8.230 7.266 29.673 Atomic orbital electron populations 1.23052 0.78525 1.04034 1.01151 1.86110 1.21296 1.26865 1.88367 1.18722 0.92056 0.83479 0.93732 1.20275 0.91011 0.98602 1.10396 1.19549 0.96073 0.91062 0.93046 1.20767 0.89034 1.03655 0.98659 1.21626 0.95565 1.02355 0.94827 1.21127 0.93485 0.98394 0.97120 1.22025 0.96891 0.97604 1.00064 1.21106 0.92174 1.01082 0.86065 1.48155 1.44275 1.30800 1.14786 1.18241 0.77427 0.80255 0.87533 1.90583 1.56049 1.34393 1.65250 1.21025 1.28890 1.12319 0.95860 0.90871 1.25735 0.94435 0.94043 0.99028 1.70027 1.23353 1.10267 1.36134 0.86357 0.78742 0.79029 0.82885 1.18742 1.20192 1.20205 1.21409 0.91537 0.88549 0.98812 1.21980 0.97272 1.01525 0.95915 1.20226 0.90093 0.99304 1.10815 1.18708 0.91152 0.84332 0.93923 1.86090 1.19061 1.29160 1.88460 1.23048 0.78632 1.03872 1.01213 1.21185 1.00251 0.92083 1.18930 0.92801 0.92744 0.88078 0.84862 0.90004 0.90487 0.91915 0.91700 0.91511 0.91917 0.91973 0.90099 0.94348 0.92211 0.94299 0.89001 0.92145 0.91694 0.85014 0.92733 0.92787 0.88117 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.25 10.50 -19.42 -0.20 -3.45 16 3 C 0.17 1.82 6.68 -39.24 -0.26 1.56 16 4 C -0.18 -2.10 9.64 -39.40 -0.38 -2.48 16 5 C 0.00 0.03 5.13 -104.67 -0.54 -0.50 16 6 C -0.08 -0.86 5.10 -27.88 -0.14 -1.00 16 7 C -0.11 -1.21 4.67 -26.73 -0.12 -1.34 16 8 C -0.08 -1.12 2.15 -90.56 -0.19 -1.31 16 9 C -0.13 -1.98 5.15 -26.59 -0.14 -2.12 16 10 C 0.12 2.38 6.41 -3.71 -0.02 2.35 16 11 N -0.64 -14.80 2.97 -174.43 -0.52 -15.32 16 12 C 0.56 16.17 7.61 -12.99 -0.10 16.07 16 13 O -0.58 -19.07 14.48 5.20 0.08 -18.99 16 14 C -0.54 -15.38 8.88 -35.63 -0.32 -15.70 16 15 H 0.07 1.89 5.64 -52.48 -0.30 1.59 16 16 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 17 N -0.77 -23.25 11.84 55.55 0.66 -22.60 16 18 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 19 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.12 2.28 6.35 -3.71 -0.02 2.25 16 23 C -0.13 -1.96 5.37 -26.61 -0.14 -2.10 16 24 C -0.19 -2.01 9.63 -39.41 -0.38 -2.39 16 25 C 0.16 1.74 6.68 -39.24 -0.26 1.48 16 26 O -0.31 -3.06 10.49 -19.41 -0.20 -3.26 16 27 C 0.03 0.15 9.81 101.05 0.99 1.14 16 28 C -0.31 -2.98 8.02 -39.29 -0.32 -3.29 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.08 0.83 6.47 -51.93 -0.34 0.49 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.81 6.51 -51.93 -0.34 0.48 16 40 H 0.08 1.82 7.04 -51.93 -0.37 1.45 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.83 5.30 -51.93 -0.28 1.55 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 49 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 50 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.13 0.95 4.54 -52.49 -0.24 0.71 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -35.99 403.80 -8.65 -44.64 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.07 Total: 1.56 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.45 Total: -3.87 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.14 Total: -37.92 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.33 Total: -25.71 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.99 -8.65 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.639 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds