Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52994 * 109.47089 * 239.99464 * 2 1 3 5 5 C 1.52994 * 109.47120 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47464 * 60.00017 * 5 4 2 7 7 C 1.53006 * 109.46685 * 300.00262 * 6 5 4 8 8 C 1.47198 * 109.46783 * 179.97438 * 7 6 5 9 9 N 4.86666 * 126.71071 * 119.99514 * 2 1 3 10 10 N 1.46495 * 109.47251 * 299.99615 * 7 6 5 11 11 S 1.65604 * 119.99912 * 304.46630 * 10 7 6 12 12 O 1.42107 * 106.39848 * 186.11429 * 11 10 7 13 13 O 1.42097 * 106.40484 * 53.19604 * 11 10 7 14 14 C 1.76195 * 107.21675 * 299.65306 * 11 10 7 15 15 C 1.38640 * 119.74967 * 95.92248 * 14 11 10 16 16 C 1.37614 * 120.24898 * 180.02562 * 15 14 11 17 17 C 1.40718 * 119.74891 * 359.97438 * 16 15 14 18 18 C 1.41393 * 120.24610 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99812 * 27.61793 * 18 17 16 20 20 C 1.39944 * 119.99809 * 207.60999 * 18 17 16 21 21 N 1.30824 * 120.00080 * 11.22876 * 20 18 17 22 22 Si 1.86798 * 119.99854 * 191.22078 * 20 18 17 23 23 H 1.48503 * 109.47217 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47157 * 120.00652 * 22 20 18 25 25 H 1.48500 * 109.47083 * 240.00418 * 22 20 18 26 26 C 1.40716 * 119.50640 * 0.02562 * 17 16 15 27 27 C 1.37621 * 119.74834 * 0.02562 * 26 17 16 28 28 C 1.52999 * 109.46675 * 119.99533 * 2 1 3 29 29 H 1.08999 * 109.47153 * 300.00172 * 1 2 3 30 30 H 1.09003 * 109.46843 * 60.00746 * 1 2 3 31 31 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47171 * 300.00108 * 4 2 1 33 33 H 1.09003 * 109.47449 * 60.00161 * 4 2 1 34 34 H 1.08998 * 109.47831 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.46975 * 299.99968 * 5 4 2 36 36 H 1.08998 * 109.47328 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47064 * 60.00006 * 6 5 4 38 38 H 0.96994 * 119.99942 * 124.45779 * 10 7 6 39 39 H 1.08001 * 119.87419 * 0.27398 * 15 14 11 40 40 H 1.08003 * 120.12656 * 179.97438 * 16 15 14 41 41 H 0.96997 * 119.99832 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.12657 * 179.97438 * 26 17 16 43 43 H 1.07997 * 119.87301 * 179.97438 * 27 26 17 44 44 H 1.09000 * 109.47289 * 60.00073 * 28 2 1 45 45 H 1.08999 * 109.47572 * 300.00039 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0796 -1.4434 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 4.0592 -1.4165 2.4516 9 7 4.4392 -1.9504 3.3789 10 7 4.0583 0.6590 1.2499 11 16 5.6825 0.9625 1.1386 12 8 5.8413 2.3643 1.3092 13 8 6.1440 0.2619 -0.0083 14 6 6.4516 0.2017 2.5294 15 6 7.0076 -1.0620 2.4022 16 6 7.6104 -1.6660 3.4818 17 6 7.6616 -0.9959 4.7181 18 6 8.2779 -1.6069 5.8344 19 1 9.0682 -2.3281 5.6873 20 6 7.8639 -1.2769 7.1298 21 7 6.7720 -0.5792 7.3098 22 14 8.8703 -1.8329 8.6020 23 1 10.0511 -2.6015 8.1327 24 1 9.3259 -0.6447 9.3674 25 1 8.0342 -2.6941 9.4764 26 6 7.0940 0.2864 4.8355 27 6 6.4953 0.8708 3.7428 28 6 2.0399 -0.7212 1.2493 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -1.7490 -1.2490 33 1 1.6767 -0.2076 -2.1392 34 1 3.9334 -1.2362 -2.1385 35 1 3.9337 0.3056 -1.2487 36 1 5.1695 -1.4434 0.0009 37 1 3.7159 -2.4710 0.0004 38 1 3.4306 1.3956 1.3151 39 1 6.9710 -1.5725 1.4512 40 1 8.0425 -2.6506 3.3806 41 1 6.4849 -0.3508 8.2077 42 1 7.1273 0.8096 5.7798 43 1 6.0587 1.8546 3.8307 44 1 1.6766 -1.7488 1.2494 45 1 1.6766 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097098411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -43.518153 kcal Electronic energy + Delta-G solvation = -29702.164552 eV Core-core repulsion = 25810.631798 eV Total energy + Delta-G solvation = -3891.532754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.89018 -37.59022 -36.56650 -35.87281 -35.20904 -34.03594 -33.93253 -32.05922 -30.20681 -29.56809 -29.42502 -26.63890 -25.79122 -23.58952 -21.77998 -21.46862 -21.12588 -19.91878 -18.94004 -17.76964 -17.57563 -17.27894 -16.78104 -15.67444 -15.29888 -15.10086 -14.67066 -14.31092 -14.10436 -13.90100 -13.41243 -13.39867 -13.20722 -12.98964 -12.67397 -12.57729 -12.35348 -12.33943 -12.20177 -12.13113 -11.97576 -11.69136 -11.50182 -11.46730 -11.33240 -11.21727 -11.16853 -11.07341 -11.02296 -10.80537 -10.62158 -10.43569 -10.31049 -9.97522 -9.83579 -9.66014 -9.52876 -9.27506 -7.86584 -7.62688 -7.03408 -4.76036 1.14957 2.25474 2.88806 2.91870 2.97295 2.98413 3.06548 3.22365 3.70883 3.83672 4.00218 4.26582 4.44554 4.56794 4.62983 4.75425 4.94704 5.10727 5.16422 5.20046 5.39147 5.42105 5.47066 5.48446 5.58757 5.62157 5.68413 5.84030 5.95045 6.04332 6.04944 6.10204 6.12929 6.15097 6.24333 6.42389 6.49777 6.70804 6.75050 6.94329 7.07811 7.14933 7.39270 7.46612 7.66520 7.82213 8.02526 8.04308 8.37883 8.57314 8.70119 9.86235 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.003505 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.641457 B = 7987.140139 C = 8519.705102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.145 4.145 7 C 0.299 3.701 8 C 0.150 3.850 9 N -0.353 5.353 10 N -1.110 6.110 11 S 2.684 3.316 12 O -0.981 6.981 13 O -0.974 6.974 14 C -0.787 4.787 15 C -0.001 4.001 16 C -0.220 4.220 17 C 0.148 3.852 18 C -0.435 4.435 19 H 0.086 0.914 20 C 0.070 3.930 21 N -0.770 5.770 22 Si 0.918 3.082 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.174 4.174 27 C -0.015 4.015 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.416 0.584 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.286 0.714 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 0.076 -10.960 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.184 4.184 7 C 0.206 3.794 8 C -0.171 4.171 9 N -0.027 5.027 10 N -0.866 5.866 11 S 2.784 3.216 12 O -0.971 6.971 13 O -0.964 6.964 14 C -0.883 4.883 15 C -0.021 4.021 16 C -0.241 4.241 17 C 0.145 3.855 18 C -0.463 4.463 19 H 0.104 0.896 20 C -0.151 4.151 21 N -0.393 5.393 22 Si 0.742 3.258 23 H -0.181 1.181 24 H -0.193 1.193 25 H -0.196 1.196 26 C -0.195 4.195 27 C -0.035 4.035 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.525 -0.265 -10.097 14.588 hybrid contribution -0.056 -0.068 1.304 1.307 sum -10.581 -0.332 -8.793 13.762 Atomic orbital electron populations 1.21829 0.94902 1.01926 1.01784 1.21135 0.95445 1.00129 0.94281 0.90467 1.21695 0.96102 1.00636 0.97142 1.21375 0.94357 1.01661 0.96960 1.22375 1.04824 0.99119 0.92124 1.17127 0.95159 0.80160 0.86946 1.29366 0.96020 0.96353 0.95406 1.81336 1.04533 1.07536 1.09343 1.55961 1.27507 1.11337 1.91810 1.01525 0.71894 0.73224 0.74936 1.93510 1.84832 1.31040 1.87767 1.93458 1.79665 1.74457 1.48853 1.29008 1.31764 1.11094 1.16481 1.20099 0.93446 0.91794 0.96790 1.20976 1.09164 0.99516 0.94459 1.17812 0.86048 0.90155 0.91525 1.19962 1.16188 1.19941 0.90226 0.89639 1.26104 0.94352 0.93287 1.01324 1.69815 1.17714 1.26820 1.24981 0.86084 0.80474 0.79486 0.79782 1.18087 1.19348 1.19579 1.21357 1.04666 0.95845 0.97622 1.20172 0.95455 0.96287 0.91598 1.21823 0.90727 1.02815 0.99304 0.92590 0.92533 0.92596 0.91770 0.91807 0.91229 0.91276 0.87396 0.90250 0.74952 0.88097 0.88581 0.90284 0.85876 0.88396 0.89714 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.09 -0.73 2.55 -90.62 -0.23 -0.96 16 3 H 0.08 0.61 6.96 -51.93 -0.36 0.25 16 4 C -0.12 -0.95 5.20 -26.74 -0.14 -1.09 16 5 C -0.11 -1.11 5.47 -26.73 -0.15 -1.26 16 6 C -0.14 -1.79 4.13 -26.73 -0.11 -1.90 16 7 C 0.30 3.90 0.67 -134.63 -0.09 3.81 16 8 C 0.15 2.57 11.10 -20.78 -0.23 2.34 16 9 N -0.35 -7.37 17.12 42.13 0.72 -6.65 16 10 N -1.11 -15.32 4.40 -1.77 -0.01 -15.33 16 11 S 2.68 49.09 5.62 -107.50 -0.60 48.49 16 12 O -0.98 -20.35 17.43 -57.17 -1.00 -21.34 16 13 O -0.97 -18.21 12.98 -57.17 -0.74 -18.95 16 14 C -0.79 -17.17 4.18 -39.29 -0.16 -17.34 16 15 C 0.00 -0.02 7.23 -39.66 -0.29 -0.31 16 16 C -0.22 -5.35 9.65 -38.87 -0.38 -5.73 16 17 C 0.15 3.86 5.56 -106.82 -0.59 3.27 16 18 C -0.44 -11.10 9.07 -37.74 -0.34 -11.44 16 19 H 0.09 2.08 7.87 -52.49 -0.41 1.66 16 20 C 0.07 1.69 5.25 -17.34 -0.09 1.60 16 21 N -0.77 -19.12 10.79 55.55 0.60 -18.52 16 22 Si 0.92 17.82 29.57 -169.99 -5.03 12.79 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 C -0.17 -4.48 8.67 -38.87 -0.34 -4.82 16 27 C -0.01 -0.35 9.49 -39.66 -0.38 -0.72 16 28 C -0.11 -1.03 3.99 -26.76 -0.11 -1.14 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.80 7.01 -51.93 -0.36 0.43 16 36 H 0.11 1.60 5.24 -51.93 -0.27 1.33 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.42 4.57 7.61 -34.47 -0.26 4.31 16 39 H 0.10 2.05 7.16 -52.49 -0.38 1.68 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 42 H 0.12 3.24 6.15 -52.48 -0.32 2.92 16 43 H 0.10 2.15 7.74 -52.49 -0.41 1.75 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -31.08 365.99 -9.96 -41.04 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.14 Total: 9.29 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: -3.28 Total: -36.34 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 1.31 Total: -40.50 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.74 Total: -40.29 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.60 Total: 48.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.08 -9.96 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds