Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47200 * 2 1 4 4 C 1.52999 * 109.46941 * 240.00420 * 2 1 3 5 5 C 1.53004 * 109.46941 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47223 * 60.00012 * 5 4 2 7 7 C 1.53006 * 109.46923 * 299.99993 * 6 5 4 8 8 C 1.47192 * 109.47160 * 299.99977 * 7 6 5 9 9 N 3.61166 * 143.66286 * 35.71583 * 2 1 3 10 10 N 1.46497 * 109.46838 * 179.97438 * 7 6 5 11 11 S 1.65607 * 119.99896 * 60.00318 * 10 7 6 12 12 O 1.42104 * 106.40050 * 311.45704 * 11 10 7 13 13 O 1.42097 * 106.40225 * 178.53654 * 11 10 7 14 14 C 1.76194 * 107.21760 * 64.99561 * 11 10 7 15 15 C 1.38636 * 119.75246 * 90.00305 * 14 11 10 16 16 C 1.37611 * 120.25448 * 180.02562 * 15 14 11 17 17 C 1.40719 * 119.74369 * 359.97438 * 16 15 14 18 18 C 1.41392 * 120.24595 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99758 * 25.13091 * 18 17 16 20 20 C 1.39945 * 120.00538 * 205.11923 * 18 17 16 21 21 N 1.30825 * 119.99653 * 17.45027 * 20 18 17 22 22 Si 1.86789 * 120.00367 * 197.44912 * 20 18 17 23 23 H 1.48497 * 109.47281 * 265.18384 * 22 20 18 24 24 H 1.48507 * 109.47231 * 145.18535 * 22 20 18 25 25 H 1.48500 * 109.47492 * 25.18283 * 22 20 18 26 26 C 1.40715 * 119.51201 * 0.27880 * 17 16 15 27 27 C 1.37619 * 119.74233 * 359.44299 * 26 17 16 28 28 C 1.52996 * 109.46987 * 60.00115 * 7 6 5 29 29 H 1.09003 * 109.47080 * 299.99976 * 1 2 3 30 30 H 1.09003 * 109.47069 * 59.99716 * 1 2 3 31 31 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47183 * 300.00043 * 4 2 1 33 33 H 1.09003 * 109.47350 * 60.00035 * 4 2 1 34 34 H 1.09001 * 109.46782 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.47200 * 299.99580 * 5 4 2 36 36 H 1.08994 * 109.47180 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47386 * 59.99681 * 6 5 4 38 38 H 0.96999 * 120.00134 * 239.99806 * 10 7 6 39 39 H 1.08001 * 119.87226 * 359.97438 * 15 14 11 40 40 H 1.08002 * 120.13388 * 179.97438 * 16 15 14 41 41 H 0.96994 * 120.00024 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.13332 * 179.72615 * 26 17 16 43 43 H 1.08003 * 119.88191 * 180.27755 * 27 26 17 44 44 H 1.08996 * 109.47423 * 59.99818 * 28 7 6 45 45 H 1.09008 * 109.46919 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2495 8 6 4.0606 0.6654 1.2499 9 7 4.4394 1.7375 1.2493 10 7 4.0568 -1.4136 2.4456 11 16 5.6848 -1.5661 2.7082 12 8 6.2444 -2.0438 1.4925 13 8 5.8293 -2.2431 3.9492 14 6 6.3285 0.0563 2.9486 15 6 6.3801 0.5938 4.2255 16 6 6.8804 1.8602 4.4250 17 6 7.3411 2.6098 3.3269 18 6 7.8567 3.9122 3.5196 19 1 8.2766 4.1908 4.4748 20 6 7.8232 4.8402 2.4727 21 7 7.0316 4.6439 1.4497 22 14 8.9086 6.3591 2.5357 23 1 8.1375 7.4954 3.1007 24 1 9.3609 6.7016 1.1633 25 1 10.0903 6.0879 3.3931 26 6 7.2790 2.0562 2.0347 27 6 6.7801 0.7857 1.8595 28 6 2.0395 -0.7217 1.2491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6767 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.9333 -1.2351 -2.1392 35 1 3.9338 0.3058 -1.2487 36 1 5.1695 -1.4442 0.0002 37 1 3.7158 -2.4710 -0.0001 38 1 3.4260 -1.7820 3.0837 39 1 6.0255 0.0168 5.0668 40 1 6.9192 2.2772 5.4205 41 1 7.0086 5.2868 0.7239 42 1 7.6258 2.6244 1.1842 43 1 6.7356 0.3569 0.8692 44 1 1.6758 -1.7492 1.2488 45 1 1.6762 -0.2083 2.1394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097098414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = -41.830165 kcal Electronic energy + Delta-G solvation = -29750.907253 eV Core-core repulsion = 25859.447695 eV Total energy + Delta-G solvation = -3891.459558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.84209 -37.57986 -36.57643 -35.56515 -35.21382 -34.43633 -33.95055 -32.17836 -30.19920 -29.41077 -29.13751 -26.55477 -25.78441 -23.37376 -21.83330 -21.48187 -21.11900 -20.60696 -18.84447 -17.58406 -17.31866 -17.10832 -16.64240 -15.66223 -15.46456 -15.15257 -14.62770 -14.60209 -14.11644 -13.77114 -13.39281 -13.23504 -13.21046 -12.99287 -12.77669 -12.50381 -12.37870 -12.22987 -12.11526 -11.99866 -11.77711 -11.62969 -11.57327 -11.48243 -11.46958 -11.25454 -11.21972 -11.05777 -10.98701 -10.78871 -10.52478 -10.48529 -10.39074 -9.95170 -9.77294 -9.67213 -9.43705 -9.25356 -7.87595 -7.58268 -7.05922 -4.74094 1.15679 2.26684 2.87704 2.91481 2.97414 3.00696 3.14363 3.30909 3.69921 3.85977 4.09935 4.26424 4.45433 4.60054 4.66389 4.74763 4.91288 5.03706 5.14148 5.29649 5.40072 5.44654 5.49525 5.54020 5.58611 5.66287 5.71120 5.87448 5.97907 6.03258 6.07673 6.12590 6.14254 6.19515 6.20522 6.39094 6.53814 6.71325 6.74302 6.93572 7.10460 7.16554 7.38939 7.48159 7.69261 7.82257 8.02257 8.12630 8.37399 8.56884 8.71388 9.82963 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.004228 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.823525 B = 6620.200607 C = 8031.904476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.298 3.702 8 C 0.139 3.861 9 N -0.337 5.337 10 N -1.115 6.115 11 S 2.685 3.315 12 O -0.975 6.975 13 O -0.982 6.982 14 C -0.794 4.794 15 C 0.005 3.995 16 C -0.240 4.240 17 C 0.144 3.856 18 C -0.434 4.434 19 H 0.086 0.914 20 C 0.071 3.929 21 N -0.751 5.751 22 Si 0.914 3.086 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.161 4.161 27 C -0.012 4.012 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.416 0.584 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.287 0.713 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 -7.767 -5.080 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.188 4.188 7 C 0.205 3.795 8 C -0.182 4.182 9 N -0.011 5.011 10 N -0.869 5.869 11 S 2.785 3.215 12 O -0.966 6.966 13 O -0.973 6.973 14 C -0.891 4.891 15 C -0.016 4.016 16 C -0.261 4.261 17 C 0.140 3.860 18 C -0.461 4.461 19 H 0.104 0.896 20 C -0.152 4.152 21 N -0.372 5.372 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.181 4.181 27 C -0.033 4.033 28 C -0.146 4.146 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.250 0.750 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.283 -6.835 -5.418 13.484 hybrid contribution -0.066 1.050 0.468 1.151 sum -10.350 -5.786 -4.950 12.849 Atomic orbital electron populations 1.21797 0.94697 1.01819 1.01855 1.21171 0.95790 1.00214 0.94280 0.90692 1.21648 0.95649 1.00695 0.97256 1.21572 0.95381 1.01358 0.97693 1.22516 1.05286 0.99442 0.91537 1.17196 0.95060 0.80944 0.86281 1.29307 0.96682 0.95742 0.96421 1.81569 1.03665 1.11576 1.04314 1.55990 1.27465 1.71508 1.31978 1.01472 0.71848 0.75333 0.72836 1.93433 1.76531 1.80386 1.46215 1.93496 1.84965 1.74223 1.44593 1.28974 1.34524 1.24932 1.00709 1.20086 0.93830 0.94251 0.93391 1.20999 1.10676 0.96332 0.98100 1.17812 0.84792 0.91785 0.91578 1.19935 1.31924 0.95664 0.98623 0.89612 1.26128 0.94200 1.00589 0.94295 1.69883 1.26370 1.34307 1.06661 0.86196 0.80837 0.80205 0.79090 1.19200 1.19627 1.18049 1.21155 1.05430 0.93801 0.97734 1.20131 0.94453 0.94191 0.94538 1.21853 0.90806 1.02620 0.99365 0.92606 0.92560 0.92509 0.91509 0.91781 0.90911 0.91619 0.86820 0.89572 0.74959 0.88052 0.88446 0.90149 0.86364 0.88710 0.89404 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.10 -0.94 2.50 -90.62 -0.23 -1.16 16 3 H 0.07 0.90 7.23 -51.93 -0.38 0.53 16 4 C -0.12 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.38 5.70 -26.73 -0.15 -1.53 16 6 C -0.15 -1.92 4.35 -26.73 -0.12 -2.04 16 7 C 0.30 4.06 0.84 -134.61 -0.11 3.94 16 8 C 0.14 2.46 8.44 -20.73 -0.17 2.29 16 9 N -0.34 -7.16 15.83 42.20 0.67 -6.49 16 10 N -1.11 -15.70 5.53 -1.75 -0.01 -15.71 16 11 S 2.68 50.32 5.63 -107.50 -0.61 49.71 16 12 O -0.98 -19.31 13.87 -57.17 -0.79 -20.11 16 13 O -0.98 -20.27 17.26 -57.17 -0.99 -21.26 16 14 C -0.79 -17.66 4.72 -39.29 -0.19 -17.85 16 15 C 0.00 0.11 9.49 -39.66 -0.38 -0.27 16 16 C -0.24 -5.88 9.80 -38.87 -0.38 -6.26 16 17 C 0.14 3.76 5.57 -106.82 -0.60 3.16 16 18 C -0.43 -11.00 9.05 -37.74 -0.34 -11.35 16 19 H 0.09 2.06 7.90 -52.49 -0.41 1.65 16 20 C 0.07 1.69 5.15 -17.34 -0.09 1.60 16 21 N -0.75 -18.50 10.96 55.55 0.61 -17.89 16 22 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 26 C -0.16 -4.12 8.13 -38.87 -0.32 -4.44 16 27 C -0.01 -0.29 5.97 -39.66 -0.24 -0.53 16 28 C -0.11 -1.07 4.10 -26.74 -0.11 -1.18 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.87 7.23 -51.93 -0.38 0.49 16 36 H 0.11 1.79 5.36 -51.93 -0.28 1.51 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.42 4.49 8.60 -34.48 -0.30 4.20 16 39 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 42 H 0.12 3.14 6.17 -52.49 -0.32 2.81 16 43 H 0.09 2.13 7.47 -52.48 -0.39 1.74 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -31.06 365.38 -10.07 -41.13 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.22 Total: 10.12 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: -3.21 Total: -37.59 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 1.27 Total: -40.09 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.78 Total: -41.37 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -0.61 Total: 49.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.06 -10.07 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.699 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds