Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47061 * 119.99596 * 2 1 3 5 5 C 1.53004 * 109.46661 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47386 * 299.99692 * 5 4 2 7 7 C 1.53002 * 109.46637 * 60.00538 * 6 5 4 8 8 C 1.47203 * 109.46803 * 180.02562 * 7 6 5 9 9 N 4.86667 * 126.71542 * 239.99961 * 2 1 3 10 10 N 1.46496 * 109.47153 * 60.00182 * 7 6 5 11 11 S 1.65599 * 120.00252 * 59.99669 * 10 7 6 12 12 O 1.42100 * 106.40111 * 178.53806 * 11 10 7 13 13 O 1.42096 * 106.40055 * 311.46370 * 11 10 7 14 14 C 1.76202 * 107.21476 * 65.00045 * 11 10 7 15 15 C 1.38636 * 119.74890 * 269.72553 * 14 11 10 16 16 C 1.37617 * 120.24555 * 179.72346 * 15 14 11 17 17 C 1.40712 * 119.74664 * 0.57175 * 16 15 14 18 18 C 1.41396 * 120.24566 * 179.68137 * 17 16 15 19 19 H 1.08003 * 119.99926 * 155.31123 * 18 17 16 20 20 C 1.39948 * 119.99945 * 335.31033 * 18 17 16 21 21 N 1.30819 * 119.99969 * 342.23285 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 162.23179 * 20 18 17 23 23 H 1.48503 * 109.47210 * 94.66257 * 22 20 18 24 24 H 1.48501 * 109.47236 * 214.66452 * 22 20 18 25 25 H 1.48507 * 109.47220 * 334.66605 * 22 20 18 26 26 C 1.40723 * 119.51260 * 359.70595 * 17 16 15 27 27 C 1.37618 * 119.73931 * 359.97438 * 26 17 16 28 28 C 1.53000 * 109.47292 * 239.99929 * 2 1 3 29 29 H 1.08998 * 109.46668 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00226 * 1 2 3 31 31 H 1.08998 * 109.46908 * 60.00176 * 1 2 3 32 32 H 1.08997 * 109.47169 * 300.00308 * 4 2 1 33 33 H 1.08998 * 109.47028 * 60.00651 * 4 2 1 34 34 H 1.08998 * 109.47129 * 60.00393 * 5 4 2 35 35 H 1.09007 * 109.46579 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.46875 * 300.00664 * 6 5 4 37 37 H 1.08999 * 109.46908 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99364 * 239.99732 * 10 7 6 39 39 H 1.07997 * 119.87256 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.12530 * 180.27998 * 16 15 14 41 41 H 0.96997 * 120.00002 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12978 * 180.02562 * 26 17 16 43 43 H 1.08006 * 119.86900 * 180.02562 * 27 26 17 44 44 H 1.08998 * 109.47230 * 60.00092 * 28 2 1 45 45 H 1.08995 * 109.46858 * 299.99594 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4416 0.0004 7 6 3.5706 -0.7204 -1.2489 8 6 4.0612 -1.4144 -2.4507 9 7 4.4395 -1.9506 -3.3785 10 7 4.0584 0.6610 -1.2486 11 16 5.6864 0.9642 -1.2482 12 8 5.8314 2.3773 -1.2828 13 8 6.2459 0.1502 -0.2267 14 6 6.3297 0.3605 -2.7735 15 6 6.7857 -0.9459 -2.8589 16 6 7.2848 -1.4297 -4.0466 17 6 7.3424 -0.5892 -5.1737 18 6 7.8595 -1.0733 -6.3974 19 1 7.5582 -0.6174 -7.3290 20 6 8.7617 -2.1432 -6.4015 21 7 9.3930 -2.4706 -5.3035 22 14 9.0643 -3.1037 -7.9747 23 1 10.2536 -2.5509 -8.6712 24 1 9.3033 -4.5317 -7.6447 25 1 7.8765 -2.9922 -8.8591 26 6 6.8821 0.7368 -5.0738 27 6 6.3808 1.1972 -3.8777 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 -0.2074 2.1393 33 1 1.6768 -1.7489 1.2493 34 1 3.9330 0.3072 1.2498 35 1 3.9334 -1.2348 2.1394 36 1 3.7176 -2.4694 0.0003 37 1 5.1706 -1.4415 0.0009 38 1 3.4278 1.3980 -1.2487 39 1 6.7453 -1.5875 -1.9911 40 1 7.6354 -2.4492 -4.1121 41 1 10.0180 -3.2124 -5.3062 42 1 6.9212 1.3904 -5.9327 43 1 6.0265 2.2145 -3.7989 44 1 1.6767 -0.2075 -2.1392 45 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097098416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -41.706422 kcal Electronic energy + Delta-G solvation = -29631.011139 eV Core-core repulsion = 25739.556947 eV Total energy + Delta-G solvation = -3891.454192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.91541 -37.61555 -36.58488 -35.92303 -35.20651 -34.08094 -33.95330 -32.09549 -30.21582 -29.59444 -29.40983 -26.65313 -25.79994 -23.64095 -21.80215 -21.47829 -21.12620 -19.94919 -18.99036 -17.79817 -17.56906 -17.28129 -16.75925 -15.56243 -15.47613 -15.11940 -14.63209 -14.37627 -14.16819 -13.91404 -13.48756 -13.38999 -13.21469 -12.98451 -12.78481 -12.64525 -12.46074 -12.34341 -12.19374 -12.13572 -12.03048 -11.64629 -11.51565 -11.48555 -11.34828 -11.23783 -11.21744 -11.08725 -11.03904 -10.77401 -10.65376 -10.48285 -10.37721 -9.99519 -9.81111 -9.68597 -9.45474 -9.26649 -7.89318 -7.59470 -7.10864 -4.75570 1.14234 2.25079 2.85276 2.90915 2.96551 2.99682 3.04536 3.12924 3.68855 3.79125 3.94934 4.25766 4.41938 4.53949 4.61116 4.72025 4.92058 5.06768 5.13717 5.17646 5.36038 5.40864 5.45030 5.48629 5.56036 5.59761 5.65670 5.81450 5.93015 6.01308 6.06635 6.08730 6.10973 6.12209 6.20749 6.39783 6.51133 6.70252 6.73148 6.92343 7.09380 7.14076 7.37973 7.47233 7.68326 7.81491 7.93843 8.01096 8.36274 8.55649 8.70420 9.80543 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003480 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.803103 B = 8044.174086 C = 8574.570616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.150 4.150 7 C 0.300 3.700 8 C 0.151 3.849 9 N -0.356 5.356 10 N -1.111 6.111 11 S 2.685 3.315 12 O -0.982 6.982 13 O -0.972 6.972 14 C -0.795 4.795 15 C -0.013 4.013 16 C -0.160 4.160 17 C 0.145 3.855 18 C -0.433 4.433 19 H 0.086 0.914 20 C 0.073 3.927 21 N -0.764 5.764 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.240 4.240 27 C 0.005 3.995 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.289 0.711 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 0.579 9.622 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.189 4.189 7 C 0.206 3.794 8 C -0.170 4.170 9 N -0.031 5.031 10 N -0.867 5.867 11 S 2.785 3.215 12 O -0.972 6.972 13 O -0.963 6.963 14 C -0.892 4.892 15 C -0.033 4.033 16 C -0.180 4.180 17 C 0.141 3.859 18 C -0.461 4.461 19 H 0.104 0.896 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.261 4.261 27 C -0.016 4.016 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.251 0.749 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.934 -0.104 9.061 15.792 hybrid contribution -0.094 -0.194 -1.172 1.192 sum -13.027 -0.299 7.889 15.233 Atomic orbital electron populations 1.21824 0.94856 1.01943 1.01809 1.21142 0.95496 1.00098 0.94287 0.90472 1.21689 0.95996 1.00688 0.97157 1.21383 0.94580 1.01453 0.97104 1.22453 1.05443 0.99006 0.92026 1.17150 0.95123 0.80210 0.86867 1.29378 0.96095 0.96223 0.95264 1.81346 1.04439 1.07732 1.09557 1.55992 1.27408 1.11248 1.92011 1.01480 0.71850 0.72964 0.75215 1.93499 1.84919 1.30332 1.88473 1.93438 1.76441 1.69675 1.56704 1.28987 1.34169 1.06640 1.19381 1.20131 0.94194 0.92060 0.96953 1.21167 1.04415 0.99826 0.92635 1.17821 0.85345 0.90020 0.92723 1.19938 1.19915 1.11718 0.94488 0.89556 1.26133 0.94069 0.96244 0.98532 1.69822 1.16903 1.23035 1.28895 0.86158 0.79921 0.78903 0.81113 1.19102 1.19571 1.18023 1.20987 1.12104 0.96178 0.96842 1.20088 0.93517 0.95895 0.92057 1.21844 0.90675 1.02830 0.99311 0.92581 0.92512 0.92577 0.91786 0.91711 0.91506 0.91184 0.90312 0.86714 0.74906 0.88641 0.86373 0.89996 0.88395 0.88047 0.90305 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.70 2.55 -90.62 -0.23 -0.93 16 3 H 0.08 0.58 6.86 -51.93 -0.36 0.22 16 4 C -0.12 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.11 -1.10 5.73 -26.73 -0.15 -1.25 16 6 C -0.15 -1.84 4.20 -26.73 -0.11 -1.95 16 7 C 0.30 3.82 0.67 -134.58 -0.09 3.73 16 8 C 0.15 2.52 10.95 -20.74 -0.23 2.30 16 9 N -0.36 -7.14 15.84 42.17 0.67 -6.47 16 10 N -1.11 -15.03 4.46 -1.73 -0.01 -15.04 16 11 S 2.68 49.74 5.63 -107.50 -0.61 49.13 16 12 O -0.98 -20.23 17.26 -57.17 -0.99 -21.21 16 13 O -0.97 -19.01 13.84 -57.17 -0.79 -19.80 16 14 C -0.79 -17.67 4.71 -39.29 -0.19 -17.86 16 15 C -0.01 -0.30 5.99 -39.66 -0.24 -0.54 16 16 C -0.16 -4.15 8.14 -38.87 -0.32 -4.47 16 17 C 0.14 3.80 5.57 -106.82 -0.60 3.21 16 18 C -0.43 -11.08 9.05 -37.74 -0.34 -11.43 16 19 H 0.09 2.09 7.91 -52.48 -0.41 1.68 16 20 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 21 N -0.76 -18.98 10.97 55.55 0.61 -18.37 16 22 Si 0.92 17.77 29.59 -169.99 -5.03 12.74 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 C -0.24 -5.91 9.80 -38.87 -0.38 -6.29 16 27 C 0.00 0.11 9.49 -39.66 -0.38 -0.27 16 28 C -0.11 -0.98 4.02 -26.70 -0.11 -1.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.74 7.60 -51.93 -0.39 0.35 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.74 5.36 -51.93 -0.28 1.46 16 38 H 0.42 4.40 7.45 -34.47 -0.26 4.14 16 39 H 0.10 2.15 7.48 -52.49 -0.39 1.75 16 40 H 0.12 3.18 6.18 -52.48 -0.32 2.85 16 41 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.21 365.39 -10.06 -41.27 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.18 Total: 9.07 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -3.24 Total: -36.82 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 1.27 Total: -39.88 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.78 Total: -41.01 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.61 Total: 49.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.21 -10.06 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.441 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds