Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47061 * 119.99596 * 2 1 3 5 5 C 1.53004 * 109.46661 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47386 * 299.99692 * 5 4 2 7 7 C 1.53002 * 109.46637 * 60.00538 * 6 5 4 8 8 C 1.47203 * 109.46803 * 180.02562 * 7 6 5 9 9 N 4.86667 * 126.71542 * 239.99961 * 2 1 3 10 10 N 1.46496 * 109.47153 * 60.00182 * 7 6 5 11 11 S 1.65599 * 120.00252 * 59.99669 * 10 7 6 12 12 O 1.42100 * 106.40111 * 178.53806 * 11 10 7 13 13 O 1.42096 * 106.40055 * 311.46370 * 11 10 7 14 14 C 1.76202 * 107.21476 * 65.00045 * 11 10 7 15 15 C 1.38636 * 119.74890 * 269.72553 * 14 11 10 16 16 C 1.37617 * 120.24555 * 179.72346 * 15 14 11 17 17 C 1.40712 * 119.74664 * 0.57175 * 16 15 14 18 18 C 1.41396 * 120.24566 * 179.68137 * 17 16 15 19 19 H 1.08003 * 119.99926 * 155.31123 * 18 17 16 20 20 C 1.39948 * 119.99945 * 335.31033 * 18 17 16 21 21 N 1.30819 * 119.99969 * 342.23285 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 162.23179 * 20 18 17 23 23 H 1.48503 * 109.47210 * 94.66257 * 22 20 18 24 24 H 1.48501 * 109.47236 * 214.66452 * 22 20 18 25 25 H 1.48507 * 109.47220 * 334.66605 * 22 20 18 26 26 C 1.40723 * 119.51260 * 359.70595 * 17 16 15 27 27 C 1.37618 * 119.73931 * 359.97438 * 26 17 16 28 28 C 1.53000 * 109.47292 * 239.99929 * 2 1 3 29 29 H 1.08998 * 109.46668 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00226 * 1 2 3 31 31 H 1.08998 * 109.46908 * 60.00176 * 1 2 3 32 32 H 1.08997 * 109.47169 * 300.00308 * 4 2 1 33 33 H 1.08998 * 109.47028 * 60.00651 * 4 2 1 34 34 H 1.08998 * 109.47129 * 60.00393 * 5 4 2 35 35 H 1.09007 * 109.46579 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.46875 * 300.00664 * 6 5 4 37 37 H 1.08999 * 109.46908 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99364 * 239.99732 * 10 7 6 39 39 H 1.07997 * 119.87256 * 359.97438 * 15 14 11 40 40 H 1.08005 * 120.12530 * 180.27998 * 16 15 14 41 41 H 0.96997 * 120.00002 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12978 * 180.02562 * 26 17 16 43 43 H 1.08006 * 119.86900 * 180.02562 * 27 26 17 44 44 H 1.08998 * 109.47230 * 60.00092 * 28 2 1 45 45 H 1.08995 * 109.46858 * 299.99594 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4416 0.0004 7 6 3.5706 -0.7204 -1.2489 8 6 4.0612 -1.4144 -2.4507 9 7 4.4395 -1.9506 -3.3785 10 7 4.0584 0.6610 -1.2486 11 16 5.6864 0.9642 -1.2482 12 8 5.8314 2.3773 -1.2828 13 8 6.2459 0.1502 -0.2267 14 6 6.3297 0.3605 -2.7735 15 6 6.7857 -0.9459 -2.8589 16 6 7.2848 -1.4297 -4.0466 17 6 7.3424 -0.5892 -5.1737 18 6 7.8595 -1.0733 -6.3974 19 1 7.5582 -0.6174 -7.3290 20 6 8.7617 -2.1432 -6.4015 21 7 9.3930 -2.4706 -5.3035 22 14 9.0643 -3.1037 -7.9747 23 1 10.2536 -2.5509 -8.6712 24 1 9.3033 -4.5317 -7.6447 25 1 7.8765 -2.9922 -8.8591 26 6 6.8821 0.7368 -5.0738 27 6 6.3808 1.1972 -3.8777 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 -0.2074 2.1393 33 1 1.6768 -1.7489 1.2493 34 1 3.9330 0.3072 1.2498 35 1 3.9334 -1.2348 2.1394 36 1 3.7176 -2.4694 0.0003 37 1 5.1706 -1.4415 0.0009 38 1 3.4278 1.3980 -1.2487 39 1 6.7453 -1.5875 -1.9911 40 1 7.6354 -2.4492 -4.1121 41 1 10.0180 -3.2124 -5.3062 42 1 6.9212 1.3904 -5.9327 43 1 6.0265 2.2145 -3.7989 44 1 1.6767 -0.2075 -2.1392 45 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097098416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -61.182262 kcal Electronic energy + Delta-G solvation = -29631.855675 eV Core-core repulsion = 25739.556947 eV Total energy + Delta-G solvation = -3892.298728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.87725 -39.45989 -38.15211 -37.24327 -36.80962 -35.81208 -35.10537 -32.89297 -32.09192 -31.31681 -30.59848 -27.67560 -27.28596 -24.58373 -23.31123 -23.02680 -22.55592 -20.99172 -20.12956 -19.48072 -19.10151 -18.60265 -18.38235 -17.25891 -16.73922 -16.16387 -15.93069 -15.84625 -15.25727 -15.22114 -15.01045 -14.85324 -14.50788 -14.30121 -14.13851 -14.02604 -13.89833 -13.59913 -13.42168 -13.28816 -13.15402 -13.12223 -13.08212 -12.91781 -12.85677 -12.60587 -12.51514 -12.28901 -12.20932 -12.04985 -11.76107 -11.59840 -11.52968 -11.29388 -11.22828 -11.10752 -10.88076 -10.64864 -9.78682 -9.50182 -8.91463 -6.68434 -0.39706 0.44206 1.05784 1.28646 1.34959 1.46137 1.63209 1.81739 2.06207 2.34711 2.49025 2.76053 2.89484 3.48868 3.54533 3.68385 3.75224 4.03613 4.18188 4.20444 4.26385 4.32303 4.38681 4.55775 4.63334 4.78639 4.81176 4.88029 4.89545 4.97420 5.04627 5.10997 5.15523 5.18343 5.21671 5.34387 5.43451 5.46926 5.49727 5.53269 5.56990 5.58423 5.72350 5.73835 5.89574 6.08834 6.12775 6.46027 6.61969 6.64919 6.78844 8.03998 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003480 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.803103 B = 8044.174086 C = 8574.570616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.108 4.108 6 C -0.154 4.154 7 C 0.297 3.703 8 C 0.173 3.827 9 N -0.420 5.420 10 N -1.090 6.090 11 S 2.718 3.282 12 O -0.996 6.996 13 O -0.979 6.979 14 C -0.806 4.806 15 C -0.008 4.008 16 C -0.182 4.182 17 C 0.117 3.883 18 C -0.470 4.470 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.799 5.799 22 Si 0.991 3.009 23 H -0.255 1.255 24 H -0.262 1.262 25 H -0.256 1.256 26 C -0.262 4.262 27 C 0.000 4.000 28 C -0.103 4.103 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.434 0.566 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.297 0.703 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 0.932 10.921 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.146 4.146 6 C -0.193 4.193 7 C 0.204 3.796 8 C -0.147 4.147 9 N -0.095 5.095 10 N -0.852 5.852 11 S 2.813 3.187 12 O -0.986 6.986 13 O -0.969 6.969 14 C -0.898 4.898 15 C -0.029 4.029 16 C -0.202 4.202 17 C 0.114 3.886 18 C -0.497 4.497 19 H 0.107 0.893 20 C -0.186 4.186 21 N -0.423 5.423 22 Si 0.810 3.190 23 H -0.179 1.179 24 H -0.187 1.187 25 H -0.180 1.180 26 C -0.282 4.282 27 C -0.020 4.020 28 C -0.143 4.143 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.274 0.726 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.260 0.265 10.330 18.430 hybrid contribution 0.537 -0.247 -1.369 1.491 sum -14.723 0.018 8.961 17.236 Atomic orbital electron populations 1.21791 0.93418 1.02508 1.02386 1.21170 0.96572 0.99955 0.93159 0.90124 1.21680 0.93785 1.01764 0.97830 1.21424 0.96611 1.00546 0.96030 1.22489 1.03601 1.00573 0.92672 1.17652 0.97651 0.78938 0.85347 1.30213 0.94336 0.95074 0.95108 1.81392 1.06565 1.09772 1.11791 1.55479 1.25809 1.12640 1.91231 1.00630 0.72645 0.72006 0.73420 1.93477 1.85814 1.31183 1.88175 1.93453 1.77628 1.69839 1.55991 1.29677 1.33252 1.05682 1.21215 1.20200 0.93412 0.92916 0.96341 1.21066 1.06135 0.99180 0.93839 1.18149 0.86241 0.90923 0.93325 1.20209 1.21440 1.13637 0.94439 0.89339 1.27033 0.93069 0.96473 1.02007 1.69862 1.17553 1.23804 1.31033 0.85058 0.79920 0.77488 0.76558 1.17901 1.18656 1.17963 1.21222 1.12906 0.95964 0.98114 1.20405 0.92836 0.97043 0.91694 1.21943 0.87178 1.04367 1.00779 0.92062 0.91644 0.92376 0.90243 0.90511 0.92455 0.90471 0.88391 0.89814 0.72639 0.88158 0.88380 0.89143 0.87492 0.85680 0.89588 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 2 C -0.09 -1.02 2.55 -10.79 -0.03 -1.04 16 3 H 0.08 0.88 6.86 -2.38 -0.02 0.86 16 4 C -0.11 -1.30 5.20 30.60 0.16 -1.14 16 5 C -0.11 -1.91 5.73 30.60 0.18 -1.73 16 6 C -0.15 -3.48 4.20 30.60 0.13 -3.36 16 7 C 0.30 6.99 0.67 1.82 0.00 6.99 16 8 C 0.17 5.71 10.95 89.44 0.98 6.69 16 9 N -0.42 -17.27 15.84 20.01 0.32 -16.95 16 10 N -1.09 -27.23 4.46 -159.38 -0.71 -27.94 16 11 S 2.72 97.59 5.63 -56.49 -0.32 97.27 16 12 O -1.00 -39.29 17.26 -128.00 -2.21 -41.50 16 13 O -0.98 -37.50 13.84 -128.00 -1.77 -39.27 16 14 C -0.81 -36.10 4.71 22.46 0.11 -35.99 16 15 C -0.01 -0.41 5.99 22.22 0.13 -0.28 16 16 C -0.18 -9.94 8.14 22.73 0.19 -9.75 16 17 C 0.12 6.46 5.57 -21.29 -0.12 6.34 16 18 C -0.47 -25.18 9.05 23.46 0.21 -24.96 16 19 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 20 C 0.03 1.64 5.14 85.26 0.44 2.08 16 21 N -0.80 -41.38 10.97 21.83 0.24 -41.15 16 22 Si 0.99 37.12 29.59 68.60 2.03 39.15 16 23 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 24 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 26 C -0.26 -13.28 9.80 22.73 0.22 -13.06 16 27 C 0.00 0.00 9.49 22.22 0.21 0.21 16 28 C -0.10 -1.56 4.02 30.61 0.12 -1.44 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.11 7.60 -2.39 -0.02 1.10 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.48 5.36 -2.39 -0.01 2.46 16 38 H 0.43 7.86 7.45 -96.74 -0.72 7.14 16 39 H 0.10 4.69 7.48 -2.91 -0.02 4.66 16 40 H 0.10 5.64 6.18 -2.91 -0.02 5.63 16 41 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 43 H 0.13 5.08 7.60 -2.91 -0.02 5.05 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -70.90 365.39 1.47 -69.44 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.30 Total: 31.95 kcal Atomic # 6 Polarization: -74.60 SS G_CDS: 3.59 Total: -71.00 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.15 Total: -86.03 kcal Atomic # 8 Polarization: -76.79 SS G_CDS: -3.98 Total: -80.77 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 97.59 SS G_CDS: -0.32 Total: 97.27 kcal Total: -70.90 1.47 -69.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.253 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds