Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46785 * 204.25916 * 3 2 1 5 5 N 1.46510 * 109.46756 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99553 * 90.00587 * 5 4 3 7 7 O 1.21280 * 119.99987 * 174.48602 * 6 5 4 8 8 C 1.50701 * 120.00208 * 354.47255 * 6 5 4 9 9 S 1.81002 * 109.47086 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99781 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.38807 * 119.99868 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99878 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47575 * 90.00031 * 14 12 10 16 16 H 1.48509 * 109.46946 * 209.99984 * 14 12 10 17 17 H 1.48497 * 109.47298 * 329.99581 * 14 12 10 18 18 C 1.46494 * 120.00225 * 270.00030 * 5 4 3 19 19 C 1.53004 * 109.47096 * 304.74287 * 18 5 4 20 20 C 1.53001 * 109.47195 * 179.97438 * 19 18 5 21 21 C 1.52994 * 109.47661 * 300.00557 * 20 19 18 22 22 C 1.53010 * 109.47004 * 59.99352 * 21 20 19 23 23 C 1.52996 * 109.46962 * 60.00671 * 22 21 20 24 24 C 1.53001 * 109.46946 * 299.99676 * 23 22 21 25 25 C 1.53004 * 109.47293 * 60.00225 * 24 23 22 26 26 C 1.52999 * 109.47065 * 184.74304 * 18 5 4 27 27 C 1.52997 * 109.47359 * 300.00250 * 22 21 20 28 28 H 1.08999 * 109.47180 * 84.26338 * 3 2 1 29 29 H 1.09004 * 109.47201 * 324.25917 * 3 2 1 30 30 H 1.09000 * 109.47378 * 60.00526 * 4 3 2 31 31 H 1.08990 * 109.47225 * 299.99906 * 4 3 2 32 32 H 1.09008 * 109.46724 * 60.00689 * 8 6 5 33 33 H 1.08992 * 109.47743 * 300.00934 * 8 6 5 34 34 H 0.96994 * 119.99514 * 179.97438 * 13 12 10 35 35 H 1.08993 * 109.47493 * 300.00242 * 19 18 5 36 36 H 1.09003 * 109.46938 * 60.00319 * 19 18 5 37 37 H 1.08994 * 109.47133 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46962 * 300.00080 * 21 20 19 39 39 H 1.08993 * 109.47422 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.46829 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47239 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47880 * 59.99543 * 23 22 21 43 43 H 1.09003 * 109.47408 * 180.02562 * 24 23 22 44 44 H 1.08993 * 109.46876 * 59.99990 * 25 24 23 45 45 H 1.08998 * 109.47065 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47448 * 300.00253 * 26 18 5 47 47 H 1.09000 * 109.47108 * 60.00451 * 26 18 5 48 48 H 1.09003 * 109.46968 * 299.99851 * 27 22 21 49 49 H 1.08998 * 109.47212 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3160 0.5927 5 7 4.5824 1.3164 0.5932 6 6 5.2565 1.7962 -0.4707 7 8 6.4651 1.8895 -0.4311 8 6 4.5086 2.2163 -1.7097 9 16 5.6838 2.8104 -2.9515 10 6 4.5706 3.2232 -4.2534 11 1 3.5086 3.0770 -4.1225 12 6 5.0586 3.7364 -5.4472 13 7 6.3530 3.9141 -5.6069 14 14 3.8784 4.1747 -6.8271 15 1 3.4503 5.5893 -6.6819 16 1 4.5578 3.9950 -8.1354 17 1 2.6888 3.2883 -6.7614 18 6 5.3147 0.7956 1.7502 19 6 4.8571 1.5259 3.0144 20 6 5.6213 0.9815 4.2229 21 6 5.3433 -0.5158 4.3700 22 6 5.8009 -1.2461 3.1057 23 6 7.3010 -1.0236 2.9029 24 6 7.5791 0.4738 2.7558 25 6 7.1215 1.2041 4.0200 26 6 6.8146 1.0186 1.5471 27 6 5.0366 -0.7018 1.8973 28 1 2.9714 -0.1019 -1.0225 29 1 2.9717 -0.8333 0.6003 30 1 2.7540 1.4187 1.6152 31 1 2.7537 2.1499 -0.0075 32 1 3.8097 3.0144 -1.4591 33 1 3.9587 1.3640 -2.1088 34 1 6.6940 4.2724 -6.4413 35 1 5.0548 2.5926 2.9095 36 1 3.7884 1.3670 3.1591 37 1 5.2957 1.5021 5.1234 38 1 4.2746 -0.6744 4.5144 39 1 5.8881 -0.9037 5.2306 40 1 5.6024 -2.3128 3.2104 41 1 7.6271 -1.5442 2.0026 42 1 7.8456 -1.4113 3.7638 43 1 8.6477 0.6324 2.6109 44 1 7.6660 0.8163 4.8809 45 1 7.3192 2.2709 3.9150 46 1 7.1407 0.4983 0.6465 47 1 7.0124 2.0853 1.4422 48 1 3.9679 -0.8604 2.0419 49 1 5.3629 -1.2217 0.9967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = -12.491034 kcal Electronic energy + Delta-G solvation = -29898.076001 eV Core-core repulsion = 26143.721778 eV Total energy + Delta-G solvation = -3754.354223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96202 -39.23374 -37.17663 -35.72834 -32.84592 -32.74345 -32.44920 -32.43289 -30.63701 -28.49410 -26.21713 -26.01056 -25.49986 -24.29648 -22.01009 -21.63525 -21.33314 -19.14614 -17.89129 -17.70562 -17.50070 -16.79099 -15.88532 -15.48806 -15.27485 -14.82309 -14.62738 -14.52317 -14.31156 -14.25402 -13.88315 -13.59356 -13.56084 -13.40155 -13.23550 -13.18380 -12.77238 -12.61009 -12.57213 -12.49735 -12.35461 -12.18768 -11.88420 -11.44067 -11.25486 -11.11584 -11.07862 -11.02042 -10.91719 -10.79404 -10.77777 -10.75280 -10.48737 -9.95805 -9.81947 -9.74761 -9.08520 -8.62859 -8.52677 -8.26066 -6.52709 -6.24240 -3.94698 2.47118 2.62322 2.82371 2.97077 3.20977 3.23025 3.28528 3.50292 3.87747 4.18290 4.29590 4.37721 4.50873 4.63692 4.73350 4.77226 4.93449 4.96717 5.01874 5.07387 5.11242 5.12667 5.14633 5.16606 5.25083 5.27011 5.33965 5.39037 5.47422 5.56799 5.60865 5.61740 5.65753 5.74245 5.82962 5.84302 5.89811 5.90193 5.95331 6.05112 6.09096 6.13606 6.16401 6.18519 6.35130 6.54182 6.55696 6.83786 7.37283 7.47149 7.57694 8.32818 8.50773 9.21756 10.83050 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003307 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.676986 B = 8465.666757 C =10002.847690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.211 3.789 3 C -0.057 4.057 4 C 0.115 3.885 5 N -0.611 5.611 6 C 0.534 3.466 7 O -0.499 6.499 8 C -0.156 4.156 9 S -0.058 6.058 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.916 3.084 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.181 3.819 19 C -0.119 4.119 20 C -0.081 4.081 21 C -0.108 4.108 22 C -0.082 4.082 23 C -0.109 4.109 24 C -0.098 4.098 25 C -0.109 4.109 26 C -0.090 4.090 27 C -0.123 4.123 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -9.946 21.327 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.107 4.107 3 C -0.098 4.098 4 C -0.010 4.010 5 N -0.345 5.345 6 C 0.323 3.677 7 O -0.372 6.372 8 C -0.307 4.307 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.502 5.502 14 Si 0.743 3.257 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.097 3.903 19 C -0.157 4.157 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.127 4.127 27 C -0.161 4.161 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.467 -9.729 21.237 23.406 hybrid contribution -1.909 0.150 -1.024 2.171 sum -3.376 -9.579 20.213 22.622 Atomic orbital electron populations 1.81242 1.12942 1.08205 1.08846 1.28988 0.95001 0.93510 0.93215 1.20065 0.81807 1.01828 1.06105 1.21388 0.80808 0.96135 1.02699 1.48013 1.05276 1.63817 1.17439 1.20330 0.87968 0.76152 0.83285 1.90764 1.13765 1.51677 1.81030 1.23687 1.04769 1.04130 0.98108 1.85367 1.08407 1.81860 1.07524 1.22852 0.94752 1.49797 1.00981 0.90994 1.24969 0.95601 0.94908 0.97966 1.70008 1.11850 1.42189 1.26172 0.86206 0.80272 0.78900 0.80369 1.20274 1.20749 1.19694 1.20423 0.93277 0.92284 0.84342 1.21919 0.99536 1.00282 0.94002 1.21014 0.95724 0.95854 0.97430 1.21563 1.00702 0.94944 0.97382 1.21025 0.95493 0.99114 0.94443 1.21555 0.95213 0.96393 1.01457 1.21350 1.00137 0.94632 0.95571 1.21563 0.95021 1.00425 0.97633 1.22124 0.90798 1.03194 0.96601 1.22082 0.99952 0.95360 0.98697 0.86587 0.86690 0.89357 0.88950 0.89347 0.89344 0.92185 0.91310 0.91822 0.91233 0.92117 0.91982 0.91164 0.91838 0.92310 0.91021 0.92304 0.91933 0.89452 0.90112 0.91637 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.84 18.54 42.15 0.78 -5.06 16 2 C 0.21 2.18 15.43 -20.76 -0.32 1.86 16 3 C -0.06 -0.45 5.77 -29.52 -0.17 -0.62 16 4 C 0.12 1.01 4.67 -4.04 -0.02 0.99 16 5 N -0.61 -6.98 2.40 -158.83 -0.38 -7.36 16 6 C 0.53 8.62 7.59 -10.98 -0.08 8.54 16 7 O -0.50 -9.63 11.09 5.56 0.06 -9.57 16 8 C -0.16 -2.85 4.84 36.01 0.17 -2.67 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 11 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 14 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.18 1.85 0.86 -131.82 -0.11 1.74 16 19 C -0.12 -1.06 4.36 -26.73 -0.12 -1.17 16 20 C -0.08 -0.64 3.19 -90.62 -0.29 -0.93 16 21 C -0.11 -0.76 5.19 -26.73 -0.14 -0.90 16 22 C -0.08 -0.63 3.19 -90.62 -0.29 -0.92 16 23 C -0.11 -0.94 5.19 -26.73 -0.14 -1.08 16 24 C -0.10 -0.98 3.20 -90.59 -0.29 -1.27 16 25 C -0.11 -0.95 5.19 -26.73 -0.14 -1.09 16 26 C -0.09 -1.13 2.84 -26.71 -0.08 -1.20 16 27 C -0.12 -1.03 3.71 -26.73 -0.10 -1.13 16 28 H 0.12 0.96 6.92 -51.93 -0.36 0.60 16 29 H 0.12 0.70 5.42 -51.93 -0.28 0.42 16 30 H 0.09 0.62 6.19 -51.93 -0.32 0.30 16 31 H 0.09 0.86 6.48 -51.93 -0.34 0.52 16 32 H 0.09 1.51 7.24 -51.91 -0.38 1.14 16 33 H 0.09 1.46 6.91 -51.92 -0.36 1.10 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.32 6.53 -51.93 -0.34 0.98 16 47 H 0.08 1.23 6.85 -51.93 -0.36 0.87 16 48 H 0.07 0.45 6.01 -51.93 -0.31 0.14 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -32.74 377.65 -9.83 -42.57 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.57 Total: -1.55 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.91 Total: -12.29 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 1.13 Total: -37.23 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.74 -9.83 -42.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.077 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds