Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33640 * 122.75117 * 2 1 4 4 S 1.76199 * 107.92282 * 180.02562 * 3 2 1 5 5 C 1.70975 * 90.28424 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91538 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46912 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46828 * 300.02222 * 6 5 4 9 9 C 1.52997 * 109.47113 * 60.02247 * 6 5 4 10 10 N 1.46509 * 109.46837 * 175.00252 * 9 6 5 11 11 C 1.34777 * 119.99703 * 180.02562 * 10 9 6 12 12 O 1.21589 * 120.00263 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.40193 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.40401 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86868 * 179.97438 * 15 14 13 17 17 N 1.34965 * 107.85999 * 359.97438 * 16 15 14 18 18 C 1.46493 * 125.97624 * 179.97438 * 17 16 15 19 19 C 1.50710 * 109.46991 * 125.02899 * 18 17 16 20 20 H 1.08002 * 119.99873 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00239 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99973 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46775 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.47273 * 209.99980 * 23 21 19 26 26 H 1.48500 * 109.47108 * 330.00230 * 23 21 19 27 27 N 1.31214 * 125.96986 * 179.97438 * 14 13 11 28 28 N 1.29021 * 110.16751 * 0.24116 * 5 4 3 29 29 H 1.08997 * 109.47318 * 89.97213 * 1 2 3 30 30 H 1.09001 * 109.47085 * 209.97800 * 1 2 3 31 31 H 1.08996 * 109.47092 * 329.97121 * 1 2 3 32 32 H 1.07992 * 126.03670 * 0.04650 * 3 2 1 33 33 H 1.09000 * 109.47009 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.46893 * 299.99733 * 8 6 5 35 35 H 1.08997 * 109.47238 * 60.00366 * 8 6 5 36 36 H 1.09000 * 109.47022 * 55.00276 * 9 6 5 37 37 H 1.08996 * 109.47225 * 294.99466 * 9 6 5 38 38 H 0.96999 * 119.99737 * 359.97438 * 10 9 6 39 39 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 40 40 H 1.07998 * 126.06449 * 0.02562 * 15 14 13 41 41 H 1.07999 * 126.07092 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47538 * 245.02631 * 18 17 16 43 43 H 1.08999 * 109.47417 * 5.03540 * 18 17 16 44 44 H 0.96997 * 120.00075 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1272 -0.0033 7 1 3.9387 -3.0712 -0.0042 8 6 5.3626 -2.0446 -1.2529 9 6 5.3636 -2.0473 1.2456 10 7 6.2341 -3.2242 1.3057 11 6 7.1011 -3.3696 2.3273 12 8 7.1611 -2.5239 3.1988 13 7 7.9016 -4.4525 2.3828 14 6 8.8038 -4.6034 3.4452 15 6 8.9771 -3.7090 4.5135 16 6 9.9362 -4.2115 5.3239 17 7 10.3564 -5.3792 4.7934 18 6 11.3890 -6.2558 5.3514 19 6 10.8276 -7.6429 5.5302 20 1 9.8040 -7.8508 5.2552 21 6 11.6205 -8.6466 6.0447 22 7 11.1304 -9.8569 6.2012 23 14 13.3911 -8.2873 6.5197 24 1 13.4449 -7.8566 7.9399 25 1 14.2096 -9.5136 6.3430 26 1 13.9261 -7.2059 5.6539 27 7 9.6332 -5.6059 3.6154 28 7 2.2200 -1.1084 -0.0066 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 1.8393 2.1307 0.0007 33 1 6.0708 -2.8732 -1.2543 34 1 4.7355 -2.1016 -2.1426 35 1 5.9074 -1.1006 -1.2521 36 1 4.7322 -2.0166 2.1336 37 1 5.9743 -1.1455 1.2026 38 1 6.1859 -3.8990 0.6106 39 1 7.8539 -5.1269 1.6873 40 1 8.4394 -2.7843 4.6621 41 1 10.3005 -3.7591 6.2344 42 1 12.2402 -6.2932 4.6715 43 1 11.7122 -5.8675 6.3173 44 1 11.6884 -10.5631 6.5629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097113299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = 100.241049 kcal Electronic energy + Delta-G solvation = -26476.383044 eV Core-core repulsion = 22557.950997 eV Total energy + Delta-G solvation = -3918.432047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.131 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.80722 -40.36994 -39.64018 -36.92002 -34.72167 -33.70225 -33.13692 -31.54028 -31.01364 -29.36811 -28.05782 -27.44694 -26.72285 -25.05067 -22.78893 -21.81039 -21.37794 -20.47784 -20.08746 -19.83950 -18.31695 -17.67166 -17.09705 -16.72047 -16.25889 -15.87797 -15.62047 -15.30412 -14.82799 -14.71420 -14.48657 -14.26516 -13.97709 -13.70678 -13.50015 -13.35004 -13.05882 -13.02496 -12.87151 -12.52056 -12.33017 -12.28505 -12.14311 -11.87789 -11.76641 -11.48630 -11.14675 -10.77483 -10.63567 -10.13444 -10.05251 -9.98895 -9.80748 -9.76665 -9.51406 -9.31962 -9.10695 -8.75370 -8.15520 -7.46296 -6.22180 -4.24360 0.27027 0.94811 1.34985 2.22415 2.40754 2.60354 3.06019 3.16267 3.23360 3.23966 3.38494 3.65572 3.80051 4.16016 4.24059 4.30716 4.41410 4.47514 4.70468 4.80393 4.89311 5.05701 5.15566 5.17761 5.19975 5.27944 5.36171 5.41796 5.47861 5.57791 5.67169 5.71344 5.81992 6.11950 6.20739 6.34904 6.48246 6.57846 6.72892 6.94260 7.29159 7.33352 7.44443 7.83528 7.88376 8.35455 8.54635 8.60850 8.87928 9.32905 10.90541 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.001588 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.326248 B =17630.062987 C =17821.822489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.267 4.267 4 S 0.135 5.865 5 C 0.060 3.940 6 C -0.029 4.029 7 H 0.111 0.889 8 C -0.149 4.149 9 C 0.148 3.852 10 N -0.742 5.742 11 C 0.715 3.285 12 O -0.566 6.566 13 N -0.642 5.642 14 C 0.279 3.721 15 C -0.282 4.282 16 C 0.050 3.950 17 N -0.320 5.320 18 C 0.232 3.768 19 C -0.534 4.534 20 H 0.086 0.914 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.300 5.300 28 N -0.468 5.468 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.399 0.601 39 H 0.408 0.592 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 22.396 -16.169 32.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.406 4.406 4 S 0.391 5.609 5 C -0.219 4.219 6 C -0.052 4.052 7 H 0.129 0.871 8 C -0.207 4.207 9 C 0.023 3.977 10 N -0.400 5.400 11 C 0.414 3.586 12 O -0.441 6.441 13 N -0.292 5.292 14 C 0.024 3.976 15 C -0.313 4.313 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.113 3.887 19 C -0.572 4.572 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.525 5.525 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 N -0.130 5.130 28 N -0.183 5.183 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.233 0.767 39 H 0.243 0.757 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.349 21.849 -15.718 30.984 hybrid contribution -0.403 0.070 -0.012 0.409 sum -15.752 21.919 -15.730 31.241 Atomic orbital electron populations 1.20372 0.86992 1.03531 1.02990 1.20320 0.98346 0.86422 1.01439 1.26894 0.95400 1.04089 1.14200 1.84095 1.06972 1.02488 1.67359 1.26687 0.93810 0.97983 1.03426 1.20022 0.93230 0.95644 0.96267 0.87100 1.21967 0.99365 1.03372 0.96033 1.21209 0.91645 0.88090 0.96791 1.44884 1.41603 1.26189 1.27275 1.15544 0.78928 0.81801 0.82291 1.90876 1.71173 1.42942 1.39098 1.41346 1.38191 1.23917 1.25775 1.18777 0.93629 0.95110 0.90063 1.21534 1.06907 1.05408 0.97500 1.22550 0.98230 0.89005 1.00090 1.48580 1.29508 1.16058 1.16068 1.20032 0.84792 0.90439 0.93401 1.21121 1.01374 0.90967 1.43763 0.89640 1.24833 0.98288 0.94776 0.94869 1.69873 1.36828 1.01487 1.44347 0.86906 0.84990 0.78667 0.79538 1.19722 1.20556 1.18864 1.77386 1.10671 1.20484 1.04509 1.66119 1.04397 1.31816 1.15944 0.90611 0.90433 0.90650 0.80562 0.90717 0.91530 0.91716 0.90713 0.90808 0.76680 0.75716 0.82000 0.81438 0.94076 0.93346 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.31 36.01 0.37 -0.07 16 2 C 0.07 0.55 6.74 -84.22 -0.57 -0.01 16 3 C -0.27 -1.86 11.13 29.12 0.32 -1.54 16 4 S 0.14 0.97 22.67 -107.50 -2.44 -1.47 16 5 C 0.06 0.50 6.03 -13.46 -0.08 0.42 16 6 C -0.03 -0.20 2.85 -91.77 -0.26 -0.46 16 7 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 8 C -0.15 -0.78 8.96 37.16 0.33 -0.44 16 9 C 0.15 1.29 4.93 -4.04 -0.02 1.27 16 10 N -0.74 -6.90 5.29 -65.22 -0.34 -7.25 16 11 C 0.72 10.15 8.53 -86.92 -0.74 9.41 16 12 O -0.57 -9.98 13.47 5.29 0.07 -9.91 16 13 N -0.64 -9.73 5.46 -15.51 -0.08 -9.81 16 14 C 0.28 5.54 8.11 -154.36 -1.25 4.29 16 15 C -0.28 -5.52 9.61 -39.83 -0.38 -5.91 16 16 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 17 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 18 C 0.23 5.51 5.33 -5.19 -0.03 5.49 16 19 C -0.53 -15.11 9.79 -34.44 -0.34 -15.44 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 23 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 27 N -0.30 -6.85 12.42 31.44 0.39 -6.46 16 28 N -0.47 -4.63 10.53 -8.06 -0.08 -4.71 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.07 0.31 7.18 -51.93 -0.37 -0.06 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 38 H 0.40 2.49 7.67 -40.82 -0.31 2.17 16 39 H 0.41 4.93 8.84 -40.82 -0.36 4.57 16 40 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 41 H 0.17 2.57 8.06 -52.49 -0.42 2.14 16 42 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 43 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -36.12 386.54 -9.65 -45.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.92 Total: 6.10 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.94 Total: -0.19 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.42 Total: -61.59 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.44 Total: -1.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.12 -9.65 -45.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097113299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.014 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds