Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33641 * 122.75277 * 2 1 4 4 S 1.76200 * 107.92655 * 179.75845 * 3 2 1 5 5 C 1.70978 * 90.28019 * 0.28861 * 4 3 2 6 6 C 1.50699 * 124.91364 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46963 * 179.69100 * 6 5 4 8 8 C 1.53004 * 109.47110 * 59.69672 * 6 5 4 9 9 C 1.52997 * 109.47337 * 299.69409 * 6 5 4 10 10 N 1.46505 * 109.47212 * 184.99961 * 9 6 5 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 6 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.40202 * 119.99735 * 180.02562 * 13 11 10 15 15 C 1.40396 * 125.97336 * 359.72158 * 14 13 11 16 16 C 1.35245 * 107.86915 * 179.82753 * 15 14 13 17 17 N 1.34970 * 107.85344 * 0.42412 * 16 15 14 18 18 C 1.46500 * 125.97244 * 179.71002 * 17 16 15 19 19 C 1.50697 * 109.47119 * 124.99970 * 18 17 16 20 20 H 1.07999 * 120.00046 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99891 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99680 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47531 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46894 * 120.00417 * 23 21 19 26 26 H 1.48502 * 109.46914 * 239.99903 * 23 21 19 27 27 N 1.31206 * 125.96906 * 180.02562 * 14 13 11 28 28 N 1.29029 * 110.16971 * 359.70682 * 5 4 3 29 29 H 1.08992 * 109.47372 * 270.02190 * 1 2 3 30 30 H 1.09001 * 109.46570 * 30.02026 * 1 2 3 31 31 H 1.08998 * 109.47309 * 150.01701 * 1 2 3 32 32 H 1.08007 * 126.03666 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46741 * 299.99564 * 8 6 5 34 34 H 1.09000 * 109.47403 * 59.99699 * 8 6 5 35 35 H 1.09001 * 109.46917 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.47153 * 64.99954 * 9 6 5 37 37 H 1.09001 * 109.46832 * 305.00144 * 9 6 5 38 38 H 0.96996 * 119.99606 * 0.02562 * 10 9 6 39 39 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 40 40 H 1.08003 * 126.06449 * 359.97438 * 15 14 13 41 41 H 1.07999 * 126.06963 * 180.15459 * 16 15 14 42 42 H 1.09004 * 109.47091 * 245.00102 * 18 17 16 43 43 H 1.08999 * 109.47275 * 4.99972 * 18 17 16 44 44 H 0.96996 * 119.99819 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0071 5 6 3.5039 -0.9819 0.0007 6 6 4.4835 -2.1271 0.0019 7 1 3.9386 -3.0712 0.0025 8 6 5.3626 -2.0450 1.2515 9 6 5.3635 -2.0469 -1.2470 10 7 6.2340 -3.2237 -1.3075 11 6 7.1009 -3.3688 -2.3292 12 8 7.1609 -2.5229 -3.2004 13 7 7.9013 -4.4517 -2.3851 14 6 8.8036 -4.6024 -3.4476 15 6 8.9733 -3.7102 -4.5182 16 6 9.9367 -4.2093 -5.3256 17 7 10.3567 -5.3773 -4.7955 18 6 11.3888 -6.2541 -5.3543 19 6 12.4520 -6.5037 -4.3159 20 1 12.3677 -6.0538 -3.3377 21 6 13.5325 -7.3064 -4.6147 22 7 13.6355 -7.8539 -5.8061 23 14 14.8501 -7.6163 -3.3273 24 1 14.5022 -6.8919 -2.0786 25 1 14.9356 -9.0721 -3.0470 26 1 16.1597 -7.1318 -3.8328 27 7 9.6329 -5.6048 -3.6181 28 7 2.2199 -1.1084 0.0004 29 1 -0.3634 0.0004 1.0276 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 1.8393 2.1308 -0.0004 33 1 5.9075 -1.1009 1.2509 34 1 4.7357 -2.1021 2.1413 35 1 6.0714 -2.8731 1.2521 36 1 5.9742 -1.1451 -1.2039 37 1 4.7321 -2.0160 -2.1350 38 1 6.1859 -3.8987 -0.6126 39 1 7.8533 -5.1268 -1.6902 40 1 8.4324 -2.7876 -4.6689 41 1 10.3018 -3.7560 -6.2353 42 1 10.9393 -7.2024 -5.6493 43 1 11.8372 -5.7779 -6.2262 44 1 14.3958 -8.4183 -6.0164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097113300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = 94.066440 kcal Electronic energy + Delta-G solvation = -26461.505722 eV Core-core repulsion = 22542.805924 eV Total energy + Delta-G solvation = -3918.699799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75059 -40.36000 -39.58943 -36.90601 -34.67030 -33.69418 -33.19890 -31.49065 -30.73487 -29.27088 -28.06046 -27.23806 -26.46038 -25.04229 -23.07380 -21.82574 -21.37050 -20.46071 -20.08351 -19.82250 -18.28262 -17.65870 -16.82806 -16.56093 -16.23275 -15.82255 -15.60096 -15.25824 -14.81707 -14.72424 -14.37756 -14.18317 -14.06843 -13.77523 -13.52604 -13.33902 -13.06846 -12.88962 -12.75595 -12.35688 -12.27999 -12.20909 -11.91827 -11.77843 -11.71552 -11.47771 -11.04318 -10.87529 -10.41475 -10.25378 -10.10814 -10.04676 -9.80587 -9.68803 -9.47506 -9.30071 -9.10722 -8.62562 -8.08404 -7.39843 -6.23214 -4.28064 0.26985 0.94986 1.35255 2.24468 2.41976 2.67522 3.12019 3.22853 3.30379 3.36235 3.42515 3.71435 3.85128 4.17213 4.29363 4.38382 4.41920 4.47680 4.70292 4.80049 4.89345 5.11981 5.14869 5.18744 5.20306 5.27956 5.36171 5.45330 5.51715 5.60660 5.67973 5.81541 5.82513 6.14836 6.27434 6.55293 6.57672 6.88459 7.01405 7.11441 7.33000 7.50805 7.71048 7.83026 7.97728 8.08579 8.57271 8.68154 8.82641 9.37535 10.85508 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.001610 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.936057 B =17382.376991 C =17782.793940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 C -0.267 4.267 4 S 0.137 5.863 5 C 0.059 3.941 6 C -0.029 4.029 7 H 0.110 0.890 8 C -0.149 4.149 9 C 0.148 3.852 10 N -0.742 5.742 11 C 0.715 3.285 12 O -0.565 6.565 13 N -0.643 5.643 14 C 0.275 3.725 15 C -0.286 4.286 16 C 0.051 3.949 17 N -0.320 5.320 18 C 0.258 3.742 19 C -0.527 4.527 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.307 5.307 28 N -0.469 5.469 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.177 0.823 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.398 0.602 39 H 0.407 0.593 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.725 16.569 13.964 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.406 4.406 4 S 0.393 5.607 5 C -0.220 4.220 6 C -0.051 4.051 7 H 0.129 0.871 8 C -0.208 4.208 9 C 0.023 3.977 10 N -0.400 5.400 11 C 0.414 3.586 12 O -0.440 6.440 13 N -0.292 5.292 14 C 0.021 3.979 15 C -0.318 4.318 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.141 3.859 19 C -0.566 4.566 20 H 0.088 0.912 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.139 5.139 28 N -0.183 5.183 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.194 0.806 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.242 0.758 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.318 16.096 13.462 30.633 hybrid contribution -0.488 -0.117 0.934 1.061 sum -22.806 15.979 14.396 31.348 Atomic orbital electron populations 1.20368 0.87006 1.03508 1.02981 1.20314 0.98333 0.86432 1.01499 1.26901 0.95432 1.04095 1.14169 1.84123 1.06915 1.02443 1.67268 1.26690 0.93809 0.98015 1.03439 1.20019 0.93214 0.95597 0.96293 0.87150 1.21972 0.99357 1.03436 0.96008 1.21205 0.91639 0.88157 0.96733 1.44883 1.41673 1.26163 1.27288 1.15549 0.78941 0.81830 0.82310 1.90878 1.71137 1.42857 1.39162 1.41348 1.38267 1.23842 1.25787 1.18770 0.93399 0.95674 0.90024 1.21509 1.07222 1.05386 0.97649 1.22555 0.97637 0.89364 1.00345 1.49050 1.28871 1.16843 1.15458 1.19738 0.82963 0.88847 0.94393 1.21309 1.05100 1.30681 0.99484 0.91239 1.24950 0.98161 0.95111 0.95900 1.69929 1.30888 1.32369 1.20185 0.86277 0.80811 0.78090 0.81341 1.19584 1.20725 1.20782 1.77319 1.10287 1.21683 1.04565 1.66121 1.04393 1.31817 1.15986 0.90619 0.90655 0.90460 0.80560 0.91694 0.91536 0.90702 0.90802 0.90749 0.76734 0.75844 0.82197 0.81539 0.93748 0.92535 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.31 36.01 0.37 -0.06 16 2 C 0.07 0.55 6.74 -84.22 -0.57 -0.02 16 3 C -0.27 -1.87 11.13 29.12 0.32 -1.54 16 4 S 0.14 1.00 22.67 -107.50 -2.44 -1.44 16 5 C 0.06 0.50 6.03 -13.46 -0.08 0.42 16 6 C -0.03 -0.20 2.85 -91.77 -0.26 -0.46 16 7 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.15 -0.80 8.96 37.16 0.33 -0.47 16 9 C 0.15 1.30 4.93 -4.04 -0.02 1.28 16 10 N -0.74 -6.96 5.29 -65.22 -0.34 -7.30 16 11 C 0.71 10.24 8.53 -86.92 -0.74 9.50 16 12 O -0.57 -10.11 13.47 5.29 0.07 -10.04 16 13 N -0.64 -9.80 5.46 -15.51 -0.08 -9.88 16 14 C 0.28 5.54 8.11 -154.36 -1.25 4.29 16 15 C -0.29 -5.75 9.61 -39.84 -0.38 -6.13 16 16 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 18 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 19 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 20 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -25.34 13.29 55.43 0.74 -24.61 16 23 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 28 N -0.47 -4.60 10.53 -8.06 -0.08 -4.68 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.33 7.18 -51.93 -0.37 -0.04 16 36 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 2.49 7.67 -40.82 -0.31 2.17 16 39 H 0.41 4.91 8.84 -40.82 -0.36 4.55 16 40 H 0.16 3.16 5.91 -52.48 -0.31 2.85 16 41 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 42 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -34.71 390.15 -10.00 -44.71 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.96 Total: 4.69 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.92 Total: 0.76 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.38 Total: -60.87 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.44 Total: -1.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.71 -10.00 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097113300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.777 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds