Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47011 * 2 1 4 4 C 1.33941 * 118.59629 * 264.99834 * 3 2 1 5 5 C 1.37946 * 122.20500 * 179.97438 * 4 3 2 6 6 C 1.47139 * 120.55447 * 180.02562 * 5 4 3 7 7 O 1.21637 * 120.00220 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99996 * 359.97438 * 6 5 4 9 9 C 1.46497 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.50697 * 109.47081 * 155.00043 * 9 8 6 13 13 H 1.07999 * 120.00055 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46872 * 59.99743 * 16 14 12 18 18 H 1.48503 * 109.47008 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46914 * 299.99916 * 16 14 12 20 20 C 1.47140 * 118.89509 * 0.27394 * 5 4 3 21 21 O 1.21858 * 121.40590 * 179.72835 * 20 5 4 22 22 C 1.47482 * 117.18231 * 359.51829 * 20 5 4 23 23 C 1.39488 * 121.14802 * 180.20927 * 22 20 5 24 24 C 1.37824 * 119.59858 * 180.25853 * 23 22 20 25 25 Cl 1.73595 * 119.87210 * 180.02562 * 24 23 22 26 26 C 1.38893 * 120.26234 * 0.02562 * 24 23 22 27 27 C 1.37723 * 120.71115 * 359.97438 * 26 24 23 28 28 C 1.37821 * 118.59992 * 85.01760 * 3 2 1 29 29 H 1.08999 * 109.47084 * 60.00437 * 1 2 3 30 30 H 1.09003 * 109.46694 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47286 * 300.00206 * 1 2 3 32 32 H 1.08999 * 109.47286 * 239.99794 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99562 * 2 1 3 34 34 H 1.08009 * 118.89733 * 0.02562 * 4 3 2 35 35 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 37 37 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 38 38 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 39 39 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 40 40 H 1.07996 * 120.20329 * 0.27852 * 23 22 20 41 41 H 1.08002 * 119.64390 * 180.02562 * 26 24 23 42 42 H 1.08003 * 120.00377 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3287 1.9515 -1.1715 5 6 2.7942 3.2472 -1.2581 6 6 3.1237 3.8379 -2.5648 7 8 3.5330 4.9815 -2.6295 8 7 2.9721 3.1118 -3.6901 9 6 3.2996 3.7000 -4.9912 10 1 4.1528 4.3696 -4.8827 11 6 2.0960 4.4878 -5.5122 12 6 3.6425 2.6033 -5.9662 13 1 3.6184 1.5714 -5.6486 14 6 3.9870 2.9175 -7.2638 15 7 4.0158 4.1741 -7.6507 16 14 4.4114 1.5581 -8.4727 17 1 3.2484 0.6466 -8.6208 18 1 4.7435 2.1544 -9.7915 19 1 5.5790 0.7926 -7.9668 20 6 2.9610 4.0268 -0.0214 21 8 3.3734 5.1733 -0.0443 22 6 2.6034 3.3637 1.2465 23 6 2.7251 4.0276 2.4672 24 6 2.3868 3.3755 3.6334 25 17 2.5350 4.1950 5.1565 26 6 1.9279 2.0651 3.5948 27 6 1.8032 1.3985 2.3961 28 6 2.1391 2.0383 1.2055 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2097 1.3779 -2.0790 35 1 2.6453 2.1999 -3.6385 36 1 1.2428 3.8182 -5.6207 37 1 2.3399 4.9259 -6.4801 38 1 1.8480 5.2811 -4.8069 39 1 4.2586 4.3951 -8.5634 40 1 3.0819 5.0464 2.4984 41 1 1.6653 1.5638 4.5147 42 1 1.4447 0.3799 2.3794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097113928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -29.995072 kcal Electronic energy + Delta-G solvation = -27718.766888 eV Core-core repulsion = 23689.943737 eV Total energy + Delta-G solvation = -4028.823150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57474 -38.90563 -38.38673 -37.62825 -36.47654 -34.63434 -33.78483 -32.35825 -31.36270 -31.11482 -29.74625 -28.45949 -25.23975 -24.63771 -24.34299 -24.23283 -21.67987 -21.33153 -19.83322 -18.70912 -18.46037 -17.70278 -16.76677 -16.06494 -15.77442 -15.60218 -15.31981 -15.12320 -14.86272 -14.73555 -14.21912 -14.11162 -13.87365 -13.79999 -13.51455 -13.18953 -12.93819 -12.79610 -12.61912 -12.30394 -12.25649 -11.88423 -11.74416 -11.66264 -11.35185 -11.25329 -11.08350 -10.94608 -10.68478 -10.30685 -10.21123 -9.66756 -9.54705 -9.31306 -9.02073 -8.84179 -8.52235 -7.95410 -7.70519 -6.09995 -4.19852 0.40727 0.42316 1.37663 1.78694 2.14920 2.59218 3.24559 3.30089 3.31205 3.46124 3.78694 3.96543 4.04887 4.18369 4.28499 4.35411 4.46112 4.47094 4.60042 4.64070 4.69058 4.83300 5.11681 5.13000 5.21825 5.24187 5.30485 5.35033 5.52896 5.60054 5.66655 5.75211 6.02360 6.16545 6.43652 6.66175 6.88735 7.03544 7.20788 7.53277 7.60459 7.72933 7.95716 7.96779 8.19013 8.70719 8.82928 9.23734 9.48235 10.95916 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.002597 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.360776 B =10778.368404 C =11961.120801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.489 5.489 4 C 0.194 3.806 5 C -0.301 4.301 6 C 0.560 3.440 7 O -0.526 6.526 8 N -0.713 5.713 9 C 0.267 3.733 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.534 4.534 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.429 3.571 21 O -0.441 6.441 22 C -0.174 4.174 23 C -0.018 4.018 24 C -0.077 4.077 25 Cl -0.066 7.066 26 C -0.052 4.052 27 C -0.163 4.163 28 C 0.197 3.803 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.379 0.621 36 H 0.025 0.975 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.265 0.735 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 -13.259 22.942 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.038 4.038 3 N -0.178 5.178 4 C 0.065 3.935 5 C -0.313 4.313 6 C 0.346 3.654 7 O -0.403 6.403 8 N -0.363 5.363 9 C 0.166 3.834 10 H 0.068 0.932 11 C -0.206 4.206 12 C -0.573 4.573 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.519 5.519 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.309 3.691 21 O -0.316 6.316 22 C -0.179 4.179 23 C -0.037 4.037 24 C -0.104 4.104 25 Cl -0.037 7.037 26 C -0.071 4.071 27 C -0.183 4.183 28 C 0.096 3.904 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.186 0.814 35 H 0.212 0.788 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.158 -11.748 22.792 26.908 hybrid contribution -0.026 -1.322 -0.578 1.443 sum -8.184 -13.070 22.214 27.042 Atomic orbital electron populations 1.22260 0.93907 1.03576 1.03804 1.22239 0.96137 0.79836 1.05564 1.42896 1.57200 1.14095 1.03582 1.22103 0.89229 0.93723 0.88492 1.22363 1.16763 0.94988 0.97194 1.17366 0.79269 0.86199 0.82611 1.90822 1.45650 1.17311 1.86504 1.46437 1.66399 1.15745 1.07683 1.18715 0.94371 0.93498 0.76852 0.93231 1.22080 0.97808 0.98186 1.02501 1.21153 1.48104 0.92633 0.95375 0.92270 1.24889 0.95045 0.95678 0.98091 1.69895 1.47036 1.16628 1.18323 0.86525 0.78798 0.81670 0.80153 1.20241 1.21126 1.20221 1.19340 0.76699 0.87119 0.85910 1.90764 1.36065 1.16943 1.87862 1.20295 1.07716 0.93559 0.96314 1.21019 0.93468 1.00428 0.88832 1.20724 1.08023 0.94356 0.87335 1.98377 1.96715 1.78877 1.29713 1.20942 0.95604 0.92214 0.98390 1.20734 1.06677 1.01092 0.89820 1.17928 0.95689 0.91263 0.85556 0.91238 0.90203 0.91582 0.87936 0.88559 0.81446 0.78828 0.95598 0.89186 0.96505 0.92493 0.83143 0.84070 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 10.07 37.16 0.37 -0.30 16 2 C 0.08 0.35 5.63 -4.04 -0.02 0.32 16 3 N -0.49 -4.17 2.63 -114.14 -0.30 -4.47 16 4 C 0.19 2.19 9.73 -16.74 -0.16 2.02 16 5 C -0.30 -5.12 6.04 -102.78 -0.62 -5.74 16 6 C 0.56 12.31 7.73 -12.65 -0.10 12.22 16 7 O -0.53 -14.33 15.22 -14.89 -0.23 -14.56 16 8 N -0.71 -14.98 5.02 -56.10 -0.28 -15.26 16 9 C 0.27 6.90 2.56 -69.09 -0.18 6.72 16 10 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 11 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 12 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 13 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 16 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.43 7.69 7.15 -32.21 -0.23 7.46 16 21 O -0.44 -9.74 15.85 -15.09 -0.24 -9.98 16 22 C -0.17 -2.32 5.89 -104.81 -0.62 -2.94 16 23 C -0.02 -0.22 9.43 -39.27 -0.37 -0.59 16 24 C -0.08 -0.73 6.32 -39.49 -0.25 -0.98 16 25 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 26 C -0.05 -0.37 9.79 -39.53 -0.39 -0.76 16 27 C -0.16 -1.10 8.67 -39.38 -0.34 -1.44 16 28 C 0.20 1.94 6.49 -83.93 -0.54 1.40 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 32 H 0.10 0.28 7.83 -51.93 -0.41 -0.12 16 33 H 0.10 0.23 6.33 -51.93 -0.33 -0.10 16 34 H 0.17 1.42 6.12 -52.48 -0.32 1.10 16 35 H 0.38 6.38 6.55 -40.82 -0.27 6.12 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.15 1.89 7.78 -52.49 -0.41 1.48 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.51 5.94 -52.48 -0.31 0.19 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -36.61 367.04 -9.71 -46.32 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.80 Total: 2.15 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.50 Total: 1.39 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.05 Total: -44.10 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.47 Total: -24.54 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.61 -9.71 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097113928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.321 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds