Wall clock time and date at job start Tue Mar 31 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31333 * 1 3 3 Si 1.86792 * 119.99866 * 2 1 4 4 H 1.48507 * 109.47108 * 240.00000 * 3 2 1 5 5 H 1.48497 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47140 * 120.00220 * 3 2 1 7 7 C 1.39100 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36802 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99493 * 179.97438 * 9 7 2 11 11 O 1.21574 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.47902 * 119.99710 * 179.97438 * 10 9 7 13 13 N 1.32840 * 119.73112 * 0.02562 * 12 10 9 14 14 C 1.31451 * 121.65274 * 179.97438 * 13 12 10 15 15 C 1.38755 * 120.91935 * 0.02562 * 14 13 12 16 16 Br 1.89099 * 120.31919 * 180.02562 * 15 14 13 17 17 C 1.38681 * 119.36294 * 359.97438 * 15 14 13 18 18 C 1.38658 * 118.47924 * 0.02562 * 17 15 14 19 19 Br 1.89106 * 120.47746 * 179.97438 * 18 17 15 20 20 H 0.96995 * 119.99905 * 0.02562 * 1 2 3 21 21 H 0.96993 * 120.00573 * 0.02562 * 9 7 2 22 22 H 1.08003 * 119.54475 * 180.27969 * 14 13 12 23 23 H 1.07999 * 120.75689 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.1010 1.6964 -1.2126 5 1 1.2823 2.7464 -0.0006 6 1 3.1011 1.6964 1.2125 7 6 2.0088 -1.2046 0.0005 8 1 3.0887 -1.2046 0.0010 9 7 1.3248 -2.3893 0.0016 10 6 1.9987 -3.5566 0.0016 11 8 3.2144 -3.5565 0.0011 12 6 1.2592 -4.8374 0.0033 13 7 -0.0692 -4.8311 0.0043 14 6 -0.7643 -5.9468 0.0054 15 6 -0.1310 -7.1814 0.0060 16 35 -1.1476 -8.7759 0.0067 17 6 1.2548 -7.2348 0.0049 18 6 1.9624 -6.0423 0.0038 19 35 3.8534 -6.0492 0.0031 20 1 -0.4850 0.8400 -0.0004 21 1 0.3548 -2.3894 0.0016 22 1 -1.8434 -5.9020 0.0016 23 1 1.7710 -8.1834 0.0058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097135159.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:17 Heat of formation + Delta-G solvation = 17.601553 kcal Electronic energy + Delta-G solvation = -14298.743097 eV Core-core repulsion = 11433.196387 eV Total energy + Delta-G solvation = -2865.546711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 347.885 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16211 -37.77731 -34.31202 -33.22546 -32.48327 -31.44065 -29.82900 -29.15324 -25.56339 -23.81390 -22.81686 -20.07206 -18.28882 -17.18922 -16.60918 -15.30170 -14.96038 -14.59820 -14.41137 -13.99366 -13.32717 -13.05801 -12.90767 -11.94743 -11.77727 -11.38020 -11.14134 -10.99081 -10.64739 -10.61825 -10.46674 -10.13494 -9.73687 -9.59333 -9.29117 -8.60472 -8.20243 -7.85514 -6.76947 -3.98264 0.59193 1.10801 1.41063 2.01595 3.02326 3.12174 3.16015 3.31463 3.91836 4.26655 4.36110 4.63715 4.70912 5.10158 5.13070 5.17675 5.52352 5.77526 6.10017 6.50647 7.21807 7.73595 7.87451 8.35624 8.87146 9.26977 9.87849 10.37177 Molecular weight = 347.88amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.004228 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.975035 B = 6620.562396 C = 8319.695368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.024 3.976 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.279 4.279 8 H 0.115 0.885 9 N -0.507 5.507 10 C 0.442 3.558 11 O -0.570 6.570 12 C 0.155 3.845 13 N -0.456 5.456 14 C 0.149 3.851 15 C -0.163 4.163 16 Br -0.040 7.040 17 C -0.022 4.022 18 C -0.118 4.118 19 Br 0.007 6.993 20 H 0.282 0.718 21 H 0.405 0.595 22 H 0.168 0.832 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -15.637 0.010 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.409 4.409 8 H 0.133 0.867 9 N -0.139 5.139 10 C 0.230 3.770 11 O -0.455 6.455 12 C 0.015 3.985 13 N -0.169 5.169 14 C -0.015 4.015 15 C -0.247 4.247 16 Br 0.044 6.956 17 C -0.051 4.051 18 C -0.203 4.203 19 Br 0.092 6.908 20 H 0.092 0.908 21 H 0.240 0.760 22 H 0.185 0.815 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.632 -15.166 0.010 15.253 hybrid contribution -0.222 0.212 0.001 0.307 sum -1.855 -14.953 0.011 15.068 Atomic orbital electron populations 1.69615 1.06406 1.29584 1.44409 1.25594 0.95763 1.00660 0.96250 0.85740 0.78879 0.79123 0.79630 1.19290 1.20519 1.19285 1.20045 0.94175 0.82001 1.44719 0.86742 1.42032 1.10514 1.04478 1.56917 1.17115 0.87315 0.82345 0.90266 1.90812 1.11395 1.84944 1.58385 1.21796 0.88974 0.95205 0.92547 1.68060 1.06888 1.29417 1.12497 1.22949 1.00705 0.85715 0.92088 1.22853 0.94801 0.93564 1.13507 1.96679 1.70931 1.30165 1.97854 1.21379 0.91895 0.97952 0.93910 1.22727 0.94509 0.94737 1.08360 1.96706 0.98370 1.98685 1.97038 0.90791 0.75988 0.81501 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.20 13.05 55.50 0.72 -21.47 14 2 C 0.02 0.61 5.50 -17.45 -0.10 0.51 14 3 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 14 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 14 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 7 C -0.28 -7.40 9.68 -15.01 -0.15 -7.54 14 8 H 0.11 3.11 7.15 -52.49 -0.38 2.73 14 9 N -0.51 -13.00 5.27 -11.82 -0.06 -13.06 14 10 C 0.44 10.85 7.75 -12.30 -0.10 10.76 14 11 O -0.57 -14.86 13.02 5.30 0.07 -14.79 14 12 C 0.15 3.21 6.75 -83.00 -0.56 2.65 14 13 N -0.46 -8.69 9.54 -9.77 -0.09 -8.78 14 14 C 0.15 2.24 10.94 -17.52 -0.19 2.05 14 15 C -0.16 -2.26 6.26 -39.23 -0.25 -2.50 14 16 Br -0.04 -0.44 33.73 -68.01 -2.29 -2.74 14 17 C -0.02 -0.33 9.70 -39.26 -0.38 -0.71 14 18 C -0.12 -2.14 6.28 -38.95 -0.24 -2.39 14 19 Br 0.01 0.12 30.41 -68.01 -2.07 -1.95 14 20 H 0.28 6.75 8.31 -40.82 -0.34 6.41 14 21 H 0.40 10.26 7.22 -40.82 -0.29 9.96 14 22 H 0.17 2.01 8.06 -52.48 -0.42 1.58 14 23 H 0.15 1.78 8.06 -52.49 -0.42 1.35 14 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -27.56 257.52 -7.48 -35.03 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -0.65 Total: 6.55 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.96 Total: 2.83 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.57 Total: -43.32 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.07 Total: -14.79 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -4.36 Total: -4.69 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.56 -7.48 -35.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135159.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.636 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds