Wall clock time and date at job start Tue Mar 31 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35914 * 116.99646 * 2 1 4 4 C 1.38748 * 120.05203 * 359.72986 * 3 2 1 5 5 C 1.38118 * 119.95825 * 179.72227 * 4 3 2 6 6 C 1.38361 * 120.04106 * 0.55117 * 5 4 3 7 7 Br 1.89109 * 119.95239 * 179.74843 * 6 5 4 8 8 C 1.38324 * 120.09766 * 359.72292 * 6 5 4 9 9 C 1.38164 * 120.04169 * 0.02562 * 8 6 5 10 10 S 1.76197 * 120.02260 * 179.97438 * 9 8 6 11 11 O 1.42109 * 104.27527 * 231.09322 * 10 9 8 12 12 O 1.42103 * 104.27609 * 358.94622 * 10 9 8 13 13 C 1.81393 * 104.45294 * 115.02310 * 10 9 8 14 14 C 1.53005 * 109.47518 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.47158 * 179.97438 * 14 13 10 16 16 H 1.07995 * 120.00086 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47511 * 89.99678 * 19 17 15 21 21 H 1.48497 * 109.47097 * 210.00049 * 19 17 15 22 22 H 1.48501 * 109.46816 * 329.99685 * 19 17 15 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99731 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99787 * 1 2 3 26 26 H 1.08001 * 120.01639 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.97949 * 180.25515 * 5 4 3 28 28 H 1.07998 * 119.97995 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.47142 * 300.00165 * 13 10 9 30 30 H 1.09006 * 109.47704 * 59.99742 * 13 10 9 31 31 H 1.09007 * 109.46581 * 299.99727 * 14 13 10 32 32 H 1.08996 * 109.46947 * 59.99667 * 14 13 10 33 33 H 0.97000 * 119.99715 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 -0.0057 5 6 1.9203 3.6050 0.0001 6 6 3.3021 3.6762 0.0001 7 35 4.1606 5.3612 0.0009 8 6 4.0564 2.5168 0.0000 9 6 3.4312 1.2848 -0.0006 10 16 4.3926 -0.1918 -0.0014 11 8 3.8589 -0.9569 -1.0734 12 8 5.7377 0.2659 -0.0266 13 6 4.0171 -0.9774 1.5899 14 6 4.8018 -2.2853 1.7109 15 6 4.4903 -2.9376 3.0332 16 1 3.8019 -2.4662 3.7189 17 6 5.0842 -4.1361 3.3675 18 7 5.9221 -4.7103 2.5321 19 14 4.6975 -4.9451 5.0062 20 1 3.5319 -5.8514 4.8482 21 1 5.8746 -5.7273 5.4620 22 1 4.3787 -3.8994 6.0114 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3200 -0.0105 27 1 1.3332 4.5114 -0.0001 28 1 5.1349 2.5747 0.0004 29 1 4.3008 -0.3075 2.4017 30 1 2.9491 -1.1873 1.6486 31 1 4.5184 -2.9553 0.8991 32 1 5.8697 -2.0750 1.6525 33 1 6.3397 -5.5537 2.7672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097164110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:22 Heat of formation + Delta-G solvation = -83.095530 kcal Electronic energy + Delta-G solvation = -20376.085694 eV Core-core repulsion = 16962.017260 eV Total energy + Delta-G solvation = -3414.068434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.986 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54539 -37.91151 -36.44395 -35.37596 -33.87881 -32.24495 -31.70370 -31.15027 -29.27764 -27.43253 -25.61503 -23.71390 -22.36464 -21.47294 -19.08444 -18.23854 -17.16508 -16.80372 -16.35023 -16.13584 -15.26209 -15.21298 -14.97429 -14.72379 -14.49623 -14.22570 -13.49136 -13.33875 -12.72104 -12.49357 -12.14434 -11.93529 -11.84240 -11.72128 -11.51119 -11.41588 -11.06701 -10.94573 -10.75031 -10.66250 -10.43016 -10.35459 -10.33360 -9.80446 -9.61930 -9.13424 -8.56654 -8.48646 -6.10931 -4.16343 0.43867 0.71012 0.84692 1.37805 2.83671 3.01962 3.26969 3.33339 3.35877 3.39410 4.19008 4.32809 4.38193 4.44404 4.66402 4.83334 4.90683 4.97673 5.08742 5.24398 5.29614 5.31599 5.42884 5.64964 5.72135 5.75932 5.82681 6.16261 6.50242 6.83204 7.32663 7.38777 7.82118 8.18507 8.86820 9.48033 11.00136 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.003255 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.938872 B = 8600.007997 C = 9207.066135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.300 6.300 3 C 0.234 3.766 4 C -0.224 4.224 5 C -0.006 4.006 6 C -0.153 4.153 7 Br -0.046 7.046 8 C 0.043 3.957 9 C -0.684 4.684 10 S 2.479 3.521 11 O -0.933 6.933 12 O -0.948 6.948 13 C -0.560 4.560 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.113 0.887 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 19.985 -5.090 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.211 6.211 3 C 0.185 3.815 4 C -0.244 4.244 5 C -0.026 4.026 6 C -0.234 4.234 7 Br 0.039 6.961 8 C 0.023 3.977 9 C -0.768 4.768 10 S 2.660 3.340 11 O -0.930 6.930 12 O -0.945 6.945 13 C -0.694 4.694 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.131 0.869 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.163 0.837 27 H 0.159 0.841 28 H 0.179 0.821 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.345 20.069 -5.831 23.319 hybrid contribution -1.284 -0.195 1.388 1.901 sum -11.629 19.874 -4.442 23.451 Atomic orbital electron populations 1.23287 0.76729 1.05435 1.01703 1.86240 1.22975 1.25577 1.86281 1.18504 0.90641 0.85202 0.87110 1.21313 1.00713 0.91585 1.10770 1.21106 0.92454 0.98092 0.90901 1.21711 0.95094 0.91918 1.14627 1.96710 1.79619 1.21738 1.98017 1.20879 1.01124 0.88593 0.87132 1.30411 1.04118 1.20040 1.22214 1.06300 0.74347 0.73940 0.79393 1.93540 1.79589 1.68708 1.51172 1.93507 1.32810 1.80414 1.87762 1.30151 1.11492 1.11486 1.16280 1.19027 0.94925 0.87313 0.99898 1.20981 1.27208 1.05988 1.01649 0.91983 1.25055 0.94888 0.97049 0.97422 1.69958 1.28880 1.18040 1.35906 0.86474 0.77963 0.79427 0.83444 1.20488 1.21004 1.19765 0.86917 0.91881 0.91933 0.83711 0.84147 0.82134 0.85955 0.85442 0.94550 0.94618 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -4.08 8.48 -29.19 -0.25 -4.33 16 3 C 0.23 3.19 6.62 -39.22 -0.26 2.93 16 4 C -0.22 -2.30 9.04 -39.44 -0.36 -2.66 16 5 C -0.01 -0.06 9.78 -39.58 -0.39 -0.44 16 6 C -0.15 -1.83 6.22 -39.50 -0.25 -2.08 16 7 Br -0.05 -0.48 33.70 -68.01 -2.29 -2.77 16 8 C 0.04 0.61 9.24 -39.58 -0.37 0.24 16 9 C -0.68 -10.61 5.59 -39.43 -0.22 -10.83 16 10 S 2.48 47.13 4.74 -107.50 -0.51 46.62 16 11 O -0.93 -20.14 17.23 -62.70 -1.08 -21.23 16 12 O -0.95 -19.75 16.74 -57.54 -0.96 -20.71 16 13 C -0.56 -10.99 5.85 37.16 0.22 -10.77 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 15 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.39 7.67 -51.93 -0.40 0.00 16 25 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.15 0.99 6.30 -52.49 -0.33 0.66 16 27 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.16 2.22 7.21 -52.49 -0.38 1.84 16 29 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 30 H 0.13 2.28 7.38 -51.92 -0.38 1.89 16 31 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -34.40 319.63 -9.28 -43.68 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.54 Total: -1.66 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: -1.18 Total: -34.87 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.29 Total: -46.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 47.13 SS G_CDS: -0.51 Total: 46.62 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.40 -9.28 -43.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.419 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds