Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99657 * 2 1 4 4 C 1.50694 * 109.47309 * 293.95046 * 3 2 1 5 5 C 1.38381 * 119.92766 * 269.72555 * 4 3 2 6 6 C 1.38341 * 120.30312 * 179.76317 * 5 4 3 7 7 C 1.37969 * 120.15414 * 0.51428 * 6 5 4 8 8 C 1.39607 * 119.84402 * 359.74794 * 7 6 5 9 9 C 1.43203 * 120.15239 * 179.97438 * 8 7 6 10 10 N 6.51512 * 57.02136 * 328.90634 * 2 1 3 11 11 C 1.37934 * 119.92113 * 90.00587 * 4 3 2 12 12 C 1.38107 * 110.99960 * 123.95288 * 2 1 3 13 13 N 1.32858 * 120.81448 * 236.02356 * 12 2 1 14 14 C 1.32123 * 121.19451 * 180.02562 * 13 12 2 15 15 N 1.31510 * 122.64648 * 0.02562 * 14 13 12 16 16 C 1.33199 * 120.68256 * 0.02562 * 15 14 13 17 17 C 1.40818 * 120.81214 * 56.04874 * 12 2 1 18 18 C 1.41168 * 134.69640 * 0.03213 * 17 12 2 19 19 N 1.30249 * 108.46928 * 180.20253 * 18 17 12 20 20 N 1.36308 * 134.61923 * 179.97438 * 16 15 14 21 21 C 1.46510 * 125.87260 * 0.07553 * 20 16 15 22 22 C 1.50695 * 109.46809 * 90.00139 * 21 20 16 23 23 H 1.07999 * 120.00635 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99588 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99924 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46907 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47364 * 119.99534 * 26 24 22 29 29 H 1.48504 * 109.46836 * 239.99648 * 26 24 22 30 30 H 1.09005 * 109.47194 * 296.04204 * 1 2 3 31 31 H 1.08999 * 109.47378 * 56.04779 * 1 2 3 32 32 H 1.09004 * 109.47427 * 176.04542 * 1 2 3 33 33 H 1.08994 * 109.47545 * 53.95809 * 3 2 1 34 34 H 1.09006 * 109.46827 * 173.95462 * 3 2 1 35 35 H 1.07997 * 119.85146 * 0.02562 * 5 4 3 36 36 H 1.08008 * 119.92517 * 180.25732 * 6 5 4 37 37 H 1.08005 * 120.07851 * 179.76347 * 7 6 5 38 38 H 1.08002 * 120.07788 * 359.95235 * 11 4 3 39 39 H 1.08001 * 118.67993 * 179.97438 * 14 13 12 40 40 H 1.08002 * 125.76328 * 359.93061 * 18 17 12 41 41 H 1.08997 * 109.46820 * 210.00471 * 21 20 16 42 42 H 1.08996 * 109.46904 * 330.00105 * 21 20 16 43 43 H 0.97001 * 119.99480 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.4986 1.9687 -2.3784 6 6 2.1750 2.5819 -3.5755 7 6 0.9944 3.2854 -3.6969 8 6 0.1229 3.3731 -2.6098 9 6 -1.1040 4.1020 -2.7284 10 7 -2.0774 4.6801 -2.8225 11 6 0.4533 2.7472 -1.4059 12 6 1.9639 -0.7201 1.0695 13 7 2.8031 -0.1625 1.9355 14 6 3.2815 -0.8445 2.9609 15 7 2.9639 -2.1003 3.1879 16 6 2.1303 -2.7481 2.3757 17 6 1.5918 -2.0636 1.2686 18 6 0.7530 -2.9728 0.5884 19 7 0.7716 -4.1080 1.2266 20 7 1.6193 -4.0111 2.3374 21 6 1.9008 -5.0807 3.2983 22 6 0.8958 -5.0257 4.4198 23 1 0.1242 -4.2700 4.4170 24 6 0.9613 -5.9402 5.4496 25 7 1.9006 -6.8607 5.4528 26 14 -0.2849 -5.8726 6.8395 27 1 -1.2309 -4.7527 6.6021 28 1 -1.0361 -7.1525 6.8937 29 1 0.4218 -5.6584 8.1279 30 1 -0.3634 0.4512 0.9234 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3444 0.1082 35 1 3.4260 1.4228 -2.2876 36 1 2.8502 2.5134 -4.4158 37 1 0.7448 3.7669 -4.6310 38 1 -0.2166 2.8108 -0.5611 39 1 3.9615 -0.3511 3.6397 40 1 0.1877 -2.7613 -0.3072 41 1 1.8336 -6.0463 2.7971 42 1 2.9044 -4.9505 3.7031 43 1 1.9464 -7.5043 6.1771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = 189.509039 kcal Electronic energy + Delta-G solvation = -28513.996212 eV Core-core repulsion = 24561.709826 eV Total energy + Delta-G solvation = -3952.286386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.70816 -40.22568 -38.86891 -37.49076 -36.69009 -33.91910 -32.98217 -32.02338 -31.69669 -31.50841 -29.74060 -27.94155 -27.11262 -25.61525 -24.26468 -23.76625 -23.12177 -22.54098 -21.71268 -20.09783 -18.73273 -17.64077 -17.47945 -16.77387 -16.74105 -16.38482 -16.21602 -15.51476 -15.17763 -14.76965 -14.65745 -14.50810 -14.27946 -14.22106 -13.93631 -13.55885 -13.44909 -13.29162 -13.15753 -12.99588 -12.60460 -12.40680 -12.22824 -12.04775 -11.74668 -11.69105 -11.48127 -11.22060 -11.09258 -10.92951 -10.84144 -10.34737 -10.25612 -9.86252 -9.52019 -9.38217 -9.25321 -8.86484 -8.65590 -8.42691 -7.94854 -6.27499 -4.34308 0.34539 0.78345 0.96534 1.68186 2.27348 2.51476 2.84885 2.91688 3.19619 3.24081 3.26977 3.32789 3.44559 3.57981 4.11720 4.25103 4.28463 4.37200 4.37800 4.56350 4.59432 4.76648 4.84562 4.89228 4.93099 5.05740 5.08231 5.17125 5.17984 5.30011 5.41728 5.42514 5.50651 5.63443 5.67554 5.77295 5.85719 6.04967 6.18666 6.31845 6.33279 6.54847 6.95550 6.96435 7.02312 7.08535 7.21473 7.57725 7.73773 7.84223 8.08046 8.55671 8.69450 9.31119 10.80774 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002176 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.022739 B =12864.151805 C =13314.003566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.468 5.468 3 C 0.101 3.899 4 C -0.081 4.081 5 C -0.064 4.064 6 C -0.120 4.120 7 C -0.070 4.070 8 C -0.032 4.032 9 C 0.255 3.745 10 N -0.419 5.419 11 C -0.064 4.064 12 C 0.430 3.570 13 N -0.598 5.598 14 C 0.350 3.650 15 N -0.532 5.532 16 C 0.351 3.649 17 C -0.295 4.295 18 C 0.069 3.931 19 N -0.234 5.234 20 N -0.331 5.331 21 C 0.262 3.738 22 C -0.534 4.534 23 H 0.062 0.938 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.273 1.273 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.197 0.803 40 H 0.189 0.811 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 19.217 -16.623 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.184 5.184 3 C -0.025 4.025 4 C -0.082 4.082 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.090 4.090 8 C -0.035 4.035 9 C -0.061 4.061 10 N -0.094 5.094 11 C -0.085 4.085 12 C 0.181 3.819 13 N -0.324 5.324 14 C 0.056 3.944 15 N -0.254 5.254 16 C 0.102 3.898 17 C -0.311 4.311 18 C -0.126 4.126 19 N -0.050 5.050 20 N -0.117 5.117 21 C 0.146 3.854 22 C -0.573 4.573 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.214 0.786 40 H 0.206 0.794 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.311 18.649 -16.293 24.799 hybrid contribution -0.666 0.374 0.918 1.194 sum 0.645 19.023 -15.375 24.468 Atomic orbital electron populations 1.22739 0.83237 1.04636 1.02096 1.58626 1.09573 1.14225 1.35975 1.21025 1.02799 0.85729 0.92993 1.19736 0.94229 0.98009 0.96224 1.21368 0.99259 0.95863 0.91786 1.21130 0.96698 0.97753 0.98197 1.21197 0.93222 0.97321 0.97295 1.15930 0.90033 1.01447 0.96105 1.25745 0.92980 0.93489 0.93866 1.81282 1.11065 1.09647 1.07360 1.21147 0.96257 0.94994 0.96113 1.19369 0.88758 0.88227 0.85556 1.68314 1.18363 1.38908 1.06771 1.24516 0.93248 0.85554 0.91113 1.67530 1.16919 1.10168 1.30736 1.19035 0.92172 0.87884 0.90664 1.19652 1.11464 0.96419 1.03582 1.23585 0.99142 0.89804 1.00029 1.76994 1.09228 1.21922 0.96827 1.49546 1.32709 1.08483 1.20957 1.19844 0.98298 0.82844 0.84443 1.21261 1.14094 1.15997 1.05948 0.92011 1.24905 0.96031 0.94668 0.98085 1.69925 1.32586 1.17103 1.33144 0.86284 0.80820 0.78126 0.81323 1.19712 1.20585 1.20556 0.93760 0.89611 0.89483 0.91628 0.87572 0.84845 0.84748 0.85064 0.85032 0.78619 0.79426 0.92639 0.92185 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.93 60.06 0.54 0.70 16 2 N -0.47 -4.87 4.77 -182.03 -0.87 -5.74 16 3 C 0.10 0.83 4.39 -4.98 -0.02 0.81 16 4 C -0.08 -0.53 4.89 -104.68 -0.51 -1.04 16 5 C -0.06 -0.35 9.69 -39.49 -0.38 -0.74 16 6 C -0.12 -0.53 10.03 -39.64 -0.40 -0.93 16 7 C -0.07 -0.34 9.76 -39.17 -0.38 -0.73 16 8 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 9 C 0.25 2.18 15.33 -22.47 -0.34 1.84 16 10 N -0.42 -4.67 18.54 41.84 0.78 -3.89 16 11 C -0.06 -0.40 7.60 -39.17 -0.30 -0.70 16 12 C 0.43 6.10 6.42 -154.85 -0.99 5.11 16 13 N -0.60 -8.49 8.76 -13.62 -0.12 -8.61 16 14 C 0.35 5.37 12.24 -92.11 -1.13 4.24 16 15 N -0.53 -10.56 10.47 -13.97 -0.15 -10.71 16 16 C 0.35 7.36 8.04 -156.24 -1.26 6.10 16 17 C -0.29 -5.05 5.76 -106.82 -0.61 -5.66 16 18 C 0.07 1.13 10.79 -17.11 -0.18 0.94 16 19 N -0.23 -4.81 12.45 30.80 0.38 -4.43 16 20 N -0.33 -7.61 3.63 -61.64 -0.22 -7.83 16 21 C 0.26 6.80 6.19 -5.19 -0.03 6.76 16 22 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 25 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 26 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.59 5.88 -51.93 -0.31 0.28 16 32 H 0.09 0.79 5.15 -51.93 -0.27 0.53 16 33 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 34 H 0.11 0.93 7.48 -51.93 -0.39 0.54 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 37 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.13 0.72 7.97 -52.49 -0.42 0.30 16 39 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.19 2.17 6.78 -52.49 -0.36 1.82 16 41 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -33.00 377.52 -10.50 -43.50 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.66 Total: -2.18 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -7.05 Total: 2.44 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: 0.54 Total: -65.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.00 -10.50 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.004 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds