Wall clock time and date at job start Tue Mar 31 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00359 * 2 1 4 4 H 1.48498 * 109.47252 * 270.00087 * 3 2 1 5 5 H 1.48501 * 109.47007 * 30.00313 * 3 2 1 6 6 H 1.48503 * 109.46882 * 150.00186 * 3 2 1 7 7 C 1.37878 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00457 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47371 * 179.97438 * 9 7 2 11 11 N 1.40062 * 125.87322 * 269.99660 * 10 9 7 12 12 C 1.30249 * 109.69608 * 179.97438 * 11 10 9 13 13 C 1.41175 * 108.46767 * 359.76993 * 12 11 10 14 14 C 1.36318 * 125.87561 * 89.99890 * 10 9 7 15 15 N 1.33192 * 134.61471 * 0.02562 * 14 10 9 16 16 C 1.31507 * 120.68567 * 180.02562 * 15 14 10 17 17 N 1.32119 * 122.64385 * 359.97438 * 16 15 14 18 18 C 1.32857 * 121.19600 * 359.97438 * 17 16 15 19 19 N 1.38111 * 120.81692 * 179.97438 * 18 17 16 20 20 C 1.48533 * 111.00204 * 117.39764 * 19 18 17 21 21 C 1.55092 * 103.28383 * 200.33651 * 20 19 18 22 22 C 1.54598 * 102.84998 * 37.30321 * 21 20 19 23 23 C 1.47897 * 110.99554 * 359.97438 * 19 18 17 24 24 H 1.09000 * 109.91881 * 26.49470 * 23 19 18 25 25 C 1.50705 * 109.92016 * 265.19536 * 23 19 18 26 26 C 1.38232 * 119.99927 * 320.68877 * 25 23 19 27 27 C 1.38229 * 119.99914 * 179.76694 * 26 25 23 28 28 C 1.38236 * 120.00088 * 0.47982 * 27 26 25 29 29 C 1.38238 * 119.99890 * 359.79183 * 28 27 26 30 30 C 1.38230 * 119.99815 * 140.95734 * 25 23 19 31 31 H 0.97006 * 119.99777 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47159 * 59.99733 * 9 7 2 33 33 H 1.09004 * 109.46880 * 300.00284 * 9 7 2 34 34 H 1.08007 * 125.76766 * 179.97438 * 12 11 10 35 35 H 1.08000 * 118.67853 * 179.97438 * 16 15 14 36 36 H 1.09003 * 110.66452 * 318.71672 * 20 19 18 37 37 H 1.08995 * 110.66642 * 81.67570 * 20 19 18 38 38 H 1.09003 * 110.70966 * 278.99320 * 21 20 19 39 39 H 1.09003 * 110.81580 * 155.66412 * 21 20 19 40 40 H 1.09002 * 110.31193 * 219.18658 * 22 21 20 41 41 H 1.09000 * 110.30788 * 97.11602 * 22 21 20 42 42 H 1.08004 * 119.99951 * 359.97438 * 26 25 23 43 43 H 1.08001 * 120.00092 * 180.25326 * 27 26 25 44 44 H 1.08001 * 120.00259 * 179.77346 * 28 27 26 45 45 H 1.08001 * 119.99792 * 179.97438 * 29 28 27 46 46 H 1.08001 * 120.00028 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 7 2.7360 -4.2366 -1.1344 12 6 3.5493 -5.1871 -0.7715 13 6 3.5904 -5.2262 0.6391 14 6 2.7219 -4.2199 1.1051 15 7 2.5786 -4.0529 2.4187 16 6 3.2318 -4.8160 3.2675 17 7 4.0525 -5.7752 2.8776 18 6 4.2614 -6.0205 1.5887 19 7 5.1215 -7.0249 1.1900 20 6 4.3979 -8.0733 0.4262 21 6 5.3375 -9.3028 0.5307 22 6 5.8902 -9.1917 1.9702 23 6 5.7120 -7.7120 2.3589 24 1 5.0419 -7.6311 3.2148 25 6 7.0501 -7.1031 2.6905 26 6 7.9085 -6.7258 1.6748 27 6 9.1338 -6.1629 1.9788 28 6 9.5050 -5.9863 3.2987 29 6 8.6489 -6.3688 4.3145 30 6 7.4214 -6.9270 4.0103 31 1 -0.4850 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8897 33 1 0.6238 -2.5566 0.8903 34 1 4.1017 -5.8338 -1.4373 35 1 3.0917 -4.6521 4.3257 36 1 3.4333 -8.2877 0.8864 37 1 4.2682 -7.7717 -0.6131 38 1 6.1446 -9.2342 -0.1987 39 1 4.7783 -10.2296 0.4027 40 1 6.9454 -9.4640 1.9924 41 1 5.3208 -9.8315 2.6445 42 1 7.6204 -6.8677 0.6436 43 1 9.8028 -5.8643 1.1852 44 1 10.4639 -5.5499 3.5363 45 1 8.9391 -6.2313 5.3456 46 1 6.7527 -7.2262 4.8039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:12 Heat of formation + Delta-G solvation = 158.462356 kcal Electronic energy + Delta-G solvation = -30265.671086 eV Core-core repulsion = 26350.152847 eV Total energy + Delta-G solvation = -3915.518239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.70336 -40.17829 -38.63467 -37.86704 -34.18864 -33.41897 -32.13978 -31.56509 -31.18489 -30.86252 -29.15743 -28.01634 -27.18873 -24.21548 -23.81449 -23.01975 -22.58938 -22.27584 -21.48884 -20.47590 -19.83752 -17.71216 -17.56308 -16.83862 -16.68141 -16.47152 -15.75811 -15.28706 -15.02943 -14.83425 -14.67837 -14.47638 -14.05493 -13.77388 -13.64306 -13.39362 -13.34027 -13.06653 -12.89428 -12.71278 -12.50916 -12.18819 -11.80239 -11.64668 -11.51494 -11.34602 -11.11625 -11.08960 -10.96971 -10.85933 -10.77193 -10.65473 -10.29546 -10.21090 -9.80574 -9.31050 -8.89286 -8.81317 -8.69818 -8.62027 -8.39299 -7.90802 -6.24352 -4.30983 1.00370 1.34496 1.43224 1.74109 2.88647 2.98029 3.23570 3.29102 3.35226 3.38151 3.78991 4.15450 4.23523 4.31089 4.40764 4.53456 4.63991 4.69273 4.82987 4.93170 4.97409 5.02909 5.10038 5.11548 5.13304 5.17846 5.26181 5.40719 5.50918 5.54532 5.56788 5.57667 5.66569 5.67968 5.74909 5.93118 5.96735 6.06780 6.23380 6.31206 6.48660 6.52377 6.56500 6.72550 6.98232 7.01157 7.03875 7.08166 7.27130 7.62252 7.78084 7.87772 8.12650 8.60860 8.73118 9.34364 10.83907 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003059 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.944709 B = 9149.881861 C =10174.021675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.235 5.235 12 C 0.072 3.928 13 C -0.291 4.291 14 C 0.350 3.650 15 N -0.531 5.531 16 C 0.347 3.653 17 N -0.593 5.593 18 C 0.426 3.574 19 N -0.451 5.451 20 C 0.046 3.954 21 C -0.122 4.122 22 C -0.125 4.125 23 C 0.105 3.895 24 H 0.102 0.898 25 C -0.063 4.063 26 C -0.093 4.093 27 C -0.127 4.127 28 C -0.125 4.125 29 C -0.125 4.125 30 C -0.106 4.106 31 H 0.268 0.732 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.187 0.813 35 H 0.196 0.804 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.090 -20.671 5.280 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.051 5.051 12 C -0.123 4.123 13 C -0.307 4.307 14 C 0.101 3.899 15 N -0.253 5.253 16 C 0.054 3.946 17 N -0.317 5.317 18 C 0.176 3.824 19 N -0.168 5.168 20 C -0.079 4.079 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.003 4.003 24 H 0.120 0.880 25 C -0.063 4.063 26 C -0.111 4.111 27 C -0.145 4.145 28 C -0.143 4.143 29 C -0.143 4.143 30 C -0.124 4.124 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.204 0.796 35 H 0.212 0.788 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.423 -19.291 4.801 23.987 hybrid contribution 0.428 0.522 0.308 0.742 sum 13.851 -18.769 5.109 23.880 Atomic orbital electron populations 1.69918 1.06008 1.27683 1.49263 1.24894 0.94988 0.99377 0.94363 0.86337 0.79738 0.82152 0.78355 1.20279 1.20755 1.19738 1.21243 0.93572 0.89646 1.52880 0.92037 1.19816 0.85647 0.79817 1.00031 1.49517 1.35880 1.27733 0.98697 1.76974 1.11081 1.07694 1.09339 1.23529 0.98594 0.97762 0.92444 1.19667 1.09631 1.05813 0.95568 1.19039 0.91797 0.90524 0.88543 1.67516 1.28214 1.29343 1.00194 1.24500 0.86071 0.84777 0.99300 1.68221 1.23576 1.24042 1.15860 1.19465 0.84771 0.90507 0.87644 1.61370 1.25926 1.09542 1.20007 1.23365 0.95881 0.89353 0.99344 1.22563 0.99122 0.97187 0.97144 1.22523 1.02457 0.94591 0.96705 1.21392 0.93784 0.91571 0.93509 0.88012 1.19568 0.94607 0.98996 0.93145 1.21013 0.93023 0.97497 0.99604 1.21149 0.96949 0.99979 0.96416 1.21115 0.99630 1.00476 0.93125 1.21066 0.94527 0.99717 0.99034 1.20978 0.96414 0.99181 0.95840 0.92227 0.92706 0.92265 0.79608 0.78785 0.92325 0.88602 0.90158 0.90202 0.90361 0.90793 0.85645 0.86430 0.86577 0.86386 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.26 7.02 6.19 -5.20 -0.03 6.98 16 10 N -0.33 -7.92 3.63 -61.65 -0.22 -8.14 16 11 N -0.24 -5.02 12.45 30.81 0.38 -4.64 16 12 C 0.07 1.24 11.34 -17.11 -0.19 1.04 16 13 C -0.29 -5.34 5.82 -106.82 -0.62 -5.96 16 14 C 0.35 7.70 8.04 -156.24 -1.26 6.45 16 15 N -0.53 -11.17 10.47 -13.97 -0.15 -11.31 16 16 C 0.35 5.83 12.24 -92.12 -1.13 4.70 16 17 N -0.59 -9.39 8.30 -13.62 -0.11 -9.50 16 18 C 0.43 6.72 6.22 -154.85 -0.96 5.75 16 19 N -0.45 -5.48 4.17 -162.57 -0.68 -6.16 16 20 C 0.05 0.43 5.95 -1.81 -0.01 0.42 16 21 C -0.12 -0.84 7.08 -24.79 -0.18 -1.01 16 22 C -0.12 -0.97 6.54 -25.35 -0.17 -1.13 16 23 C 0.10 1.12 2.33 -67.78 -0.16 0.96 16 24 H 0.10 1.21 6.43 -51.93 -0.33 0.88 16 25 C -0.06 -0.72 4.74 -104.62 -0.50 -1.22 16 26 C -0.09 -1.08 9.33 -39.59 -0.37 -1.45 16 27 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 16 28 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 29 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 30 C -0.11 -1.16 9.68 -39.58 -0.38 -1.54 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.19 2.32 7.20 -52.48 -0.38 1.94 16 35 H 0.20 2.48 8.06 -52.49 -0.42 2.05 16 36 H 0.06 0.59 7.99 -51.93 -0.42 0.18 16 37 H 0.10 0.82 6.78 -51.93 -0.35 0.47 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.59 7.68 -51.93 -0.40 0.19 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.13 1.40 7.71 -52.48 -0.40 1.00 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.16 8.05 -52.49 -0.42 0.73 16 LS Contribution 384.54 15.07 5.80 5.80 Total: -1.00 -32.84 384.54 -12.89 -45.72 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.05 Total: 1.47 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -7.57 Total: -5.03 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.04 Total: -64.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.84 -12.89 -45.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.187 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds