Wall clock time and date at job start Tue Mar 31 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47157 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47235 * 30.00019 * 3 2 1 6 6 H 1.48495 * 109.47387 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99926 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00093 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.46916 * 180.02562 * 9 7 2 11 11 N 1.40056 * 125.87500 * 90.03045 * 10 9 7 12 12 C 1.30252 * 109.69659 * 179.73498 * 11 10 9 13 13 C 1.41167 * 108.47081 * 359.97438 * 12 11 10 14 14 C 1.36317 * 125.87271 * 269.71490 * 10 9 7 15 15 N 1.33194 * 134.61670 * 0.26657 * 14 10 9 16 16 C 1.31506 * 120.68666 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64410 * 359.95527 * 16 15 14 18 18 C 1.32865 * 121.19384 * 0.02562 * 17 16 15 19 19 N 1.38105 * 120.81494 * 180.02562 * 18 17 16 20 20 C 1.47841 * 110.99860 * 18.20309 * 19 18 17 21 21 C 1.54904 * 104.79789 * 213.63650 * 20 19 18 22 22 C 1.55144 * 101.65188 * 37.07585 * 21 20 19 23 23 C 1.47439 * 110.99829 * 257.36658 * 19 18 17 24 24 H 1.09008 * 109.88757 * 242.66225 * 23 19 18 25 25 C 1.50706 * 109.89065 * 3.84528 * 23 19 18 26 26 C 1.38229 * 120.00387 * 243.04826 * 25 23 19 27 27 C 1.38229 * 120.00283 * 179.80700 * 26 25 23 28 28 C 1.38245 * 119.99851 * 0.40456 * 27 26 25 29 29 C 1.38233 * 119.99739 * 359.85020 * 28 27 26 30 30 C 1.38234 * 119.99489 * 63.32526 * 25 23 19 31 31 H 0.97000 * 119.99909 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46513 * 60.00352 * 9 7 2 33 33 H 1.08998 * 109.47173 * 300.00045 * 9 7 2 34 34 H 1.08004 * 125.76503 * 180.02562 * 12 11 10 35 35 H 1.07998 * 118.67848 * 179.97438 * 16 15 14 36 36 H 1.08998 * 110.37778 * 332.46696 * 20 19 18 37 37 H 1.09003 * 110.37191 * 94.80768 * 20 19 18 38 38 H 1.09003 * 110.99153 * 278.98018 * 21 20 19 39 39 H 1.09006 * 111.02320 * 155.17934 * 21 20 19 40 40 H 1.09001 * 110.70561 * 205.96577 * 22 21 20 41 41 H 1.08997 * 110.85746 * 82.79923 * 22 21 20 42 42 H 1.08003 * 119.99928 * 359.97438 * 26 25 23 43 43 H 1.08001 * 120.00642 * 180.23059 * 27 26 25 44 44 H 1.07996 * 120.00210 * 179.83105 * 28 27 26 45 45 H 1.08005 * 119.99959 * 179.97438 * 29 28 27 46 46 H 1.08000 * 120.00545 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 7 4.2734 -3.3482 -1.1377 12 6 4.6956 -4.5260 -0.7758 13 6 4.7187 -4.5789 0.6347 14 6 4.2716 -3.3274 1.1017 15 7 4.2008 -3.1201 2.4155 16 6 4.5417 -4.0656 3.2635 17 7 4.9656 -5.2544 2.8728 18 6 5.0706 -5.5580 1.5835 19 7 5.5141 -6.8033 1.1838 20 6 5.4088 -7.7824 2.2866 21 6 6.6116 -8.7372 2.0842 22 6 7.7106 -7.7574 1.5949 23 6 6.9188 -6.7463 0.7393 24 1 6.9858 -7.0191 -0.3139 25 6 7.4667 -5.3580 0.9482 26 6 7.8751 -4.6056 -0.1370 27 6 8.3740 -3.3307 0.0543 28 6 8.4722 -2.8114 1.3317 29 6 8.0687 -3.5659 2.4174 30 6 7.5662 -4.8393 2.2257 31 1 -0.4850 0.8401 -0.0004 32 1 3.8751 -0.6805 0.8889 33 1 3.8745 -0.6801 -0.8911 34 1 4.9808 -5.3267 -1.4422 35 1 4.4721 -3.8623 4.3219 36 1 5.4825 -7.2781 3.2501 37 1 4.4709 -8.3334 2.2165 38 1 6.3911 -9.4875 1.3249 39 1 6.8991 -9.2086 3.0241 40 1 8.4502 -8.2798 0.9882 41 1 8.1886 -7.2582 2.4377 42 1 7.8019 -5.0127 -1.1347 43 1 8.6896 -2.7413 -0.7939 44 1 8.8645 -1.8164 1.4814 45 1 8.1458 -3.1603 3.4154 46 1 7.2509 -5.4287 3.0740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:15 Heat of formation + Delta-G solvation = 175.908818 kcal Electronic energy + Delta-G solvation = -31815.393743 eV Core-core repulsion = 27900.632040 eV Total energy + Delta-G solvation = -3914.761703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96422 -40.28410 -38.46219 -37.84379 -34.13196 -33.31734 -32.13662 -31.66724 -31.28171 -30.83141 -29.13653 -27.98507 -27.66892 -24.19018 -23.68404 -22.87135 -22.52742 -22.39169 -21.21849 -20.79143 -19.53398 -17.68827 -17.53827 -17.12045 -16.89853 -16.34333 -16.10143 -15.31340 -14.99541 -14.80073 -14.58710 -14.44714 -14.03510 -13.81335 -13.65021 -13.45250 -13.27411 -13.17567 -12.65758 -12.59619 -12.46486 -12.25955 -12.02250 -11.87302 -11.42507 -11.26385 -11.21605 -11.18935 -10.93271 -10.83828 -10.77982 -10.59192 -10.31870 -10.10834 -9.68511 -9.21807 -8.88803 -8.85596 -8.74662 -8.61170 -8.36194 -7.86845 -6.23168 -4.25770 0.99286 1.26258 1.43835 1.75718 2.85183 2.99948 3.18778 3.25593 3.27133 3.47569 3.81843 4.17049 4.22934 4.24890 4.48502 4.51784 4.54738 4.63376 4.84991 4.91214 4.97587 5.06646 5.10275 5.12112 5.15789 5.21108 5.29730 5.45879 5.50974 5.56320 5.58138 5.66034 5.66797 5.78139 5.84884 5.93173 6.03223 6.04449 6.27250 6.43074 6.44383 6.47725 6.51225 6.53352 6.56268 6.88322 6.97849 7.12607 7.24256 7.30816 7.63679 8.08878 8.29584 8.62059 8.79136 9.31609 10.89615 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003852 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.182804 B = 7266.314108 C = 7870.532762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.239 3.761 10 N -0.333 5.333 11 N -0.234 5.234 12 C 0.081 3.919 13 C -0.266 4.266 14 C 0.354 3.646 15 N -0.528 5.528 16 C 0.343 3.657 17 N -0.593 5.593 18 C 0.437 3.563 19 N -0.468 5.468 20 C 0.034 3.966 21 C -0.128 4.128 22 C -0.132 4.132 23 C 0.127 3.873 24 H 0.102 0.898 25 C -0.109 4.109 26 C -0.095 4.095 27 C -0.120 4.120 28 C -0.114 4.114 29 C -0.120 4.120 30 C -0.103 4.103 31 H 0.269 0.731 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.186 0.814 35 H 0.193 0.807 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.487 -15.083 4.437 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.096 0.904 9 C 0.120 3.880 10 N -0.119 5.119 11 N -0.049 5.049 12 C -0.115 4.115 13 C -0.282 4.282 14 C 0.105 3.895 15 N -0.249 5.249 16 C 0.049 3.951 17 N -0.317 5.317 18 C 0.189 3.811 19 N -0.187 5.187 20 C -0.093 4.093 21 C -0.166 4.166 22 C -0.170 4.170 23 C 0.021 3.979 24 H 0.120 0.880 25 C -0.110 4.110 26 C -0.114 4.114 27 C -0.138 4.138 28 C -0.132 4.132 29 C -0.139 4.139 30 C -0.122 4.122 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.203 0.797 35 H 0.209 0.791 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.523 -13.855 3.877 23.454 hybrid contribution 0.637 0.674 0.374 1.000 sum 19.160 -13.181 4.252 23.641 Atomic orbital electron populations 1.69872 1.06155 1.27361 1.49027 1.24765 0.94824 0.98786 0.94000 0.86883 0.80444 0.83703 0.78981 1.19624 1.20453 1.18845 1.21112 0.87901 0.95471 1.53166 0.90401 1.20055 0.96631 0.72530 0.98755 1.48918 1.50702 1.13235 0.99059 1.76963 1.15407 1.03653 1.08851 1.23469 0.99568 0.95698 0.92741 1.19589 1.16088 0.97004 0.95489 1.18950 0.93207 0.88966 0.88361 1.67468 1.21637 1.35557 1.00242 1.24387 0.88602 0.82916 0.99150 1.68249 1.23969 1.22930 1.16520 1.19217 0.86950 0.87768 0.87187 1.61042 1.19091 1.03844 1.34745 1.23200 0.99188 0.92230 0.94646 1.22724 0.94516 0.97537 1.01857 1.22921 0.97927 0.96363 0.99821 1.21404 0.83914 0.91710 1.00891 0.88025 1.20009 1.00952 0.96140 0.93858 1.20948 0.98031 0.94320 0.98090 1.21089 0.99990 0.95647 0.97068 1.21153 0.99602 0.99492 0.92944 1.21057 0.99395 0.94586 0.98822 1.21186 0.98146 0.96117 0.96728 0.92139 0.92856 0.93590 0.79738 0.79087 0.89195 0.89877 0.90536 0.90328 0.90140 0.90568 0.86076 0.86259 0.86456 0.86410 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.54 -15.69 9.94 -34.44 -0.34 -16.03 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.24 6.00 5.26 -5.19 -0.03 5.97 16 10 N -0.33 -7.75 3.63 -61.64 -0.22 -7.97 16 11 N -0.23 -4.92 12.45 30.80 0.38 -4.54 16 12 C 0.08 1.41 11.29 -17.11 -0.19 1.22 16 13 C -0.27 -4.80 4.79 -106.82 -0.51 -5.31 16 14 C 0.35 7.58 8.04 -156.23 -1.26 6.33 16 15 N -0.53 -10.76 10.47 -13.97 -0.15 -10.91 16 16 C 0.34 5.55 12.11 -92.12 -1.12 4.44 16 17 N -0.59 -8.86 6.30 -13.62 -0.09 -8.94 16 18 C 0.44 6.67 3.75 -154.85 -0.58 6.09 16 19 N -0.47 -5.72 5.17 -163.43 -0.84 -6.56 16 20 C 0.03 0.34 6.55 -2.30 -0.02 0.33 16 21 C -0.13 -0.93 7.08 -24.59 -0.17 -1.11 16 22 C -0.13 -1.03 6.34 -24.91 -0.16 -1.19 16 23 C 0.13 1.28 3.58 -67.88 -0.24 1.04 16 24 H 0.10 0.91 7.92 -51.92 -0.41 0.50 16 25 C -0.11 -1.28 2.95 -104.62 -0.31 -1.59 16 26 C -0.10 -1.13 8.68 -39.59 -0.34 -1.48 16 27 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 28 C -0.11 -1.45 10.05 -39.58 -0.40 -1.84 16 29 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 30 C -0.10 -1.28 6.18 -39.58 -0.24 -1.53 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.05 1.34 7.20 -51.93 -0.37 0.97 16 33 H 0.05 1.12 7.57 -51.93 -0.39 0.72 16 34 H 0.19 2.47 8.06 -52.48 -0.42 2.05 16 35 H 0.19 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.09 1.00 6.44 -51.93 -0.33 0.66 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.64 6.69 -51.93 -0.35 0.29 16 42 H 0.12 1.22 7.97 -52.48 -0.42 0.80 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 46 H 0.13 1.58 6.47 -52.49 -0.34 1.24 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -33.49 371.80 -12.02 -45.51 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.01 Total: 4.15 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -6.80 Total: -6.27 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.14 Total: -65.25 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.49 -12.02 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.420 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds