Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00216 * 2 1 4 4 H 1.48505 * 109.46935 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47034 * 29.99495 * 3 2 1 6 6 H 1.48497 * 109.47399 * 149.99874 * 3 2 1 7 7 C 1.37874 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00445 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00099 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47449 * 179.97438 * 9 7 2 11 11 N 1.40061 * 125.87526 * 269.99824 * 10 9 7 12 12 C 1.30244 * 109.69287 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.47388 * 359.76658 * 12 11 10 14 14 C 1.36318 * 125.87094 * 89.99600 * 10 9 7 15 15 N 1.33195 * 134.61846 * 0.02562 * 14 10 9 16 16 C 1.31508 * 120.68467 * 179.97438 * 15 14 10 17 17 N 1.32119 * 122.64629 * 0.02562 * 16 15 14 18 18 C 1.32866 * 121.19212 * 359.97438 * 17 16 15 19 19 N 1.38107 * 120.81014 * 179.97438 * 18 17 16 20 20 C 1.46497 * 120.00267 * 359.97438 * 19 18 17 21 21 C 1.50698 * 109.47129 * 180.02562 * 20 19 18 22 22 C 1.35108 * 125.68613 * 95.00117 * 21 20 19 23 23 N 1.36838 * 107.18141 * 180.02562 * 22 21 20 24 24 C 1.36482 * 132.57179 * 179.97438 * 23 22 21 25 25 C 1.34948 * 120.61123 * 179.97438 * 24 23 22 26 26 C 1.40477 * 120.29984 * 0.03985 * 25 24 23 27 27 C 1.36025 * 119.69114 * 359.97438 * 26 25 24 28 28 C 1.37081 * 106.99516 * 0.02562 * 23 22 21 29 29 N 1.32556 * 108.04019 * 359.97438 * 28 23 22 30 30 H 0.97001 * 119.99515 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47076 * 59.99397 * 9 7 2 32 32 H 1.09001 * 109.46835 * 300.00190 * 9 7 2 33 33 H 1.08001 * 125.76209 * 179.97438 * 12 11 10 34 34 H 1.07999 * 118.67390 * 179.97438 * 16 15 14 35 35 H 0.96998 * 119.99769 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46791 * 60.00033 * 20 19 18 37 37 H 1.09001 * 109.47375 * 300.00588 * 20 19 18 38 38 H 1.08005 * 126.41003 * 0.06093 * 22 21 20 39 39 H 1.08003 * 119.69297 * 0.03648 * 24 23 22 40 40 H 1.07998 * 119.85026 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.15010 * 180.25917 * 26 25 24 42 42 H 1.08000 * 120.33361 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 7 4.2730 -3.3485 1.1378 12 6 4.6896 -4.5282 0.7757 13 6 4.7034 -4.5843 -0.6348 14 6 4.2664 -3.3292 -1.1018 15 7 4.1939 -3.1225 -2.4156 16 6 4.5294 -4.0701 -3.2636 17 7 4.9495 -5.2602 -2.8729 18 6 5.0561 -5.5632 -1.5836 19 7 5.4957 -6.8099 -1.1840 20 6 5.8507 -7.8175 -2.1864 21 6 6.2952 -9.0801 -1.4940 22 6 5.5112 -10.1450 -1.2170 23 7 6.2962 -11.0718 -0.5866 24 6 6.0369 -12.3156 -0.0883 25 6 7.0139 -13.0379 0.4991 26 6 8.3139 -12.5165 0.6062 27 6 8.5858 -11.2779 0.1141 28 6 7.5546 -10.5359 -0.4961 29 7 7.5293 -9.3324 -1.0512 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6805 -0.8888 33 1 4.9730 -5.3294 1.4421 34 1 4.4577 -3.8675 -4.3220 35 1 5.5687 -7.0187 -0.2395 36 1 6.6611 -7.4399 -2.8099 37 1 4.9824 -8.0317 -2.8096 38 1 4.4615 -10.2461 -1.4500 39 1 5.0410 -12.7261 -0.1657 40 1 6.7952 -14.0211 0.8889 41 1 9.0949 -13.0983 1.0731 42 1 9.5817 -10.8672 0.1905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 220.738539 kcal Electronic energy + Delta-G solvation = -28151.325771 eV Core-core repulsion = 24134.967687 eV Total energy + Delta-G solvation = -4016.358084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.135 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.24345 -41.38307 -38.57523 -38.00938 -36.19281 -34.09415 -33.71744 -32.47653 -31.47999 -31.05068 -29.78531 -29.04950 -27.80123 -26.47766 -23.90916 -23.73799 -23.15368 -22.96306 -22.20057 -20.99184 -20.04105 -18.29050 -17.89611 -17.39651 -17.25746 -17.07686 -16.51120 -16.28397 -15.98339 -15.31529 -15.15153 -15.04406 -14.60553 -14.32972 -14.12295 -13.90444 -13.73186 -13.48103 -12.95604 -12.92320 -12.61748 -12.41597 -12.24736 -12.17934 -12.00670 -11.50485 -11.28105 -11.02073 -10.95729 -10.67301 -10.46621 -10.23453 -10.09459 -9.66272 -9.29643 -9.24993 -8.70736 -8.66409 -8.31337 -8.21237 -7.61496 -6.19407 -4.21600 0.25236 0.79862 1.31679 1.94847 2.11585 2.21536 2.90457 3.01826 3.05001 3.23912 3.29778 3.31222 3.38236 3.69932 3.92590 4.22155 4.29105 4.32825 4.40222 4.56202 4.60342 4.72596 4.77908 4.88353 4.97086 4.99397 5.11550 5.16634 5.33572 5.43672 5.48780 5.56277 5.63255 5.69549 5.73285 5.99070 6.14096 6.29290 6.53983 6.57796 6.60137 6.90593 6.93671 7.24726 7.34375 7.45718 7.47333 7.86087 8.17081 8.34373 8.79868 8.83913 9.35637 10.93338 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.001920 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.056955 B =14577.887384 C =14928.973851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.333 5.333 11 N -0.242 5.242 12 C 0.074 3.926 13 C -0.335 4.335 14 C 0.367 3.633 15 N -0.558 5.558 16 C 0.371 3.629 17 N -0.617 5.617 18 C 0.513 3.487 19 N -0.700 5.700 20 C 0.216 3.784 21 C 0.042 3.958 22 C -0.073 4.073 23 N -0.364 5.364 24 C 0.056 3.944 25 C -0.142 4.142 26 C -0.104 4.104 27 C -0.077 4.077 28 C 0.221 3.779 29 N -0.475 5.475 30 H 0.268 0.732 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.183 0.817 34 H 0.196 0.804 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.707 -28.570 -1.316 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.119 5.119 11 N -0.057 5.057 12 C -0.121 4.121 13 C -0.353 4.353 14 C 0.120 3.880 15 N -0.283 5.283 16 C 0.077 3.923 17 N -0.348 5.348 18 C 0.261 3.739 19 N -0.333 5.333 20 C 0.091 3.909 21 C -0.091 4.091 22 C -0.205 4.205 23 N -0.035 5.035 24 C -0.066 4.066 25 C -0.163 4.163 26 C -0.127 4.127 27 C -0.097 4.097 28 C -0.022 4.022 29 N -0.195 5.195 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.200 0.800 34 H 0.213 0.787 35 H 0.247 0.753 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.204 0.796 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.728 -26.733 -1.405 31.048 hybrid contribution -0.328 -0.526 0.645 0.894 sum 15.399 -27.259 -0.761 31.317 Atomic orbital electron populations 1.69878 1.06151 1.27320 1.49201 1.24774 0.94850 0.98838 0.94034 0.86868 0.80341 0.83595 0.79109 1.19492 1.20569 1.18867 1.21108 0.87910 0.95447 1.53007 0.90413 1.20079 0.96640 0.72556 0.98903 1.48929 1.50645 1.13181 0.99123 1.76937 1.16292 1.03650 1.08860 1.23381 1.00190 0.96134 0.92443 1.19560 1.22182 0.98252 0.95297 1.18888 0.92383 0.88288 0.88468 1.67506 1.25019 1.35840 0.99910 1.24421 0.86613 0.82090 0.99185 1.67949 1.28865 1.23636 1.14384 1.17851 0.84105 0.83770 0.88224 1.44250 1.70068 1.09855 1.09131 1.19434 1.00727 0.81672 0.89064 1.20865 0.89559 0.96497 1.02198 1.22579 0.98781 0.90891 1.08290 1.42859 1.11173 1.12457 1.37043 1.21661 1.01675 0.84033 0.99205 1.20852 0.92716 1.01160 1.01569 1.21070 0.97036 0.95234 0.99403 1.20326 0.97894 0.93673 0.97778 1.21005 0.85342 0.91949 1.03943 1.70697 1.21241 1.11579 1.16000 0.92189 0.93087 0.93059 0.80012 0.78719 0.75323 0.89572 0.89590 0.79610 0.81874 0.83130 0.83927 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.54 -15.76 9.94 -34.44 -0.34 -16.10 16 8 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.24 6.05 5.26 -5.19 -0.03 6.02 16 10 N -0.33 -7.96 3.63 -61.64 -0.22 -8.18 16 11 N -0.24 -5.23 12.45 30.80 0.38 -4.85 16 12 C 0.07 1.29 11.87 -17.11 -0.20 1.08 16 13 C -0.34 -6.21 6.14 -106.82 -0.66 -6.87 16 14 C 0.37 8.16 8.04 -156.23 -1.26 6.90 16 15 N -0.56 -11.75 10.47 -13.97 -0.15 -11.89 16 16 C 0.37 6.22 12.24 -92.12 -1.13 5.10 16 17 N -0.62 -9.87 9.69 -13.62 -0.13 -10.00 16 18 C 0.51 8.11 7.55 -154.85 -1.17 6.94 16 19 N -0.70 -8.46 5.67 -61.26 -0.35 -8.80 16 20 C 0.22 2.26 6.26 -5.20 -0.03 2.23 16 21 C 0.04 0.43 6.43 -82.97 -0.53 -0.11 16 22 C -0.07 -0.60 11.66 -16.43 -0.19 -0.80 16 23 N -0.36 -2.96 2.95 -62.66 -0.18 -3.14 16 24 C 0.06 0.28 10.95 -16.65 -0.18 0.10 16 25 C -0.14 -0.53 9.99 -39.91 -0.40 -0.93 16 26 C -0.10 -0.45 10.07 -39.53 -0.40 -0.85 16 27 C -0.08 -0.53 10.11 -39.36 -0.40 -0.93 16 28 C 0.22 2.18 7.81 -156.04 -1.22 0.96 16 29 N -0.48 -5.63 11.32 -9.01 -0.10 -5.74 16 30 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.05 1.27 7.20 -51.93 -0.37 0.90 16 32 H 0.05 1.29 7.57 -51.93 -0.39 0.89 16 33 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.20 2.45 8.06 -52.49 -0.42 2.02 16 35 H 0.41 4.46 8.33 -40.82 -0.34 4.12 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.19 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.16 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 41 H 0.14 0.24 8.06 -52.49 -0.42 -0.19 16 42 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -37.67 370.29 -11.80 -49.48 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.50 Total: 2.63 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -8.23 Total: 4.95 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: 0.02 Total: -79.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.67 -11.80 -49.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.216 kcal (2) G-P(sol) polarization free energy of solvation -37.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 232.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 220.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds