Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34247 * 125.02815 * 2 1 4 4 C 1.46495 * 107.02370 * 179.97438 * 3 2 1 5 5 C 1.39646 * 133.92359 * 180.02562 * 4 3 2 6 6 C 1.38223 * 119.59005 * 179.97438 * 5 4 3 7 7 N 1.40036 * 119.88929 * 179.97438 * 6 5 4 8 8 C 1.38176 * 119.99915 * 324.12177 * 7 6 5 9 9 N 1.32885 * 120.81413 * 354.54039 * 8 7 6 10 10 C 1.32112 * 121.19177 * 179.97438 * 9 8 7 11 11 N 1.31521 * 122.64835 * 0.02562 * 10 9 8 12 12 C 1.33193 * 120.68581 * 359.97438 * 11 10 9 13 13 C 1.40831 * 120.81456 * 174.25805 * 8 7 6 14 14 C 1.41153 * 134.69536 * 0.68785 * 13 8 7 15 15 N 1.30261 * 108.47073 * 179.53987 * 14 13 8 16 16 N 1.36316 * 134.61556 * 179.97438 * 12 11 10 17 17 C 1.46496 * 125.87566 * 0.02562 * 16 12 11 18 18 C 1.50711 * 109.47045 * 89.99821 * 17 16 12 19 19 H 1.08002 * 119.99572 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00015 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99886 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00245 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46863 * 89.99617 * 22 20 18 24 24 H 1.48500 * 109.47386 * 209.99872 * 22 20 18 25 25 H 1.48506 * 109.46945 * 329.99921 * 22 20 18 26 26 C 1.39434 * 120.22664 * 359.97438 * 6 5 4 27 27 C 1.37643 * 120.59974 * 0.02562 * 26 6 5 28 28 C 1.39126 * 120.02458 * 359.97438 * 27 26 6 29 29 N 1.36802 * 125.03607 * 179.97438 * 2 1 3 30 30 H 0.97000 * 125.06570 * 359.97438 * 29 2 1 31 31 H 1.09006 * 109.47344 * 90.00414 * 1 2 3 32 32 H 1.09006 * 109.47085 * 209.99657 * 1 2 3 33 33 H 1.08993 * 109.47715 * 329.99676 * 1 2 3 34 34 H 1.08006 * 126.48358 * 359.73781 * 3 2 1 35 35 H 1.07993 * 120.20722 * 359.96429 * 5 4 3 36 36 H 0.96996 * 119.99820 * 144.11735 * 7 6 5 37 37 H 1.07998 * 118.68005 * 179.97438 * 10 9 8 38 38 H 1.08001 * 125.76474 * 359.27403 * 14 13 8 39 39 H 1.08997 * 109.47386 * 209.99672 * 17 16 12 40 40 H 1.08997 * 109.47685 * 330.00281 * 17 16 12 41 41 H 0.97006 * 119.99809 * 179.97438 * 21 20 18 42 42 H 1.07992 * 119.69880 * 180.02562 * 26 6 5 43 43 H 1.07999 * 119.98772 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2775 1.0993 0.0000 4 6 3.6707 0.6465 0.0006 5 6 4.9029 1.3036 0.0014 6 6 6.0707 0.5643 0.0024 7 7 7.3098 1.2168 0.0026 8 6 7.4696 2.3962 -0.6994 9 7 6.4932 2.8694 -1.4665 10 6 6.6377 3.9965 -2.1405 11 7 7.7401 4.7125 -2.0975 12 6 8.7760 4.3218 -1.3570 13 6 8.6691 3.1293 -0.6147 14 6 9.8937 2.9542 0.0650 15 7 10.6751 3.9543 -0.2282 16 7 10.0186 4.8239 -1.1083 17 6 10.5719 6.0610 -1.6648 18 6 10.2461 7.2132 -0.7496 19 1 9.6835 7.0410 0.1561 20 6 10.6671 8.4869 -1.0681 21 7 10.3832 9.4923 -0.2693 22 14 11.6406 8.7845 -2.6344 23 1 10.7059 9.0825 -3.7491 24 1 12.5576 9.9357 -2.4361 25 1 12.4324 7.5719 -2.9630 26 6 6.0194 -0.8291 0.0032 27 6 4.8096 -1.4856 0.0025 28 6 3.6232 -0.7590 0.0015 29 7 2.2923 -1.1201 0.0005 30 1 1.9622 -2.0322 0.0013 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.9350 2.1236 -0.0040 35 1 4.9431 2.3828 0.0010 36 1 8.0558 0.8409 0.4955 37 1 5.8180 4.3435 -2.7520 38 1 10.1396 2.1323 0.7212 39 1 11.6537 5.9656 -1.7578 40 1 10.1374 6.2436 -2.6476 41 1 10.6797 10.3883 -0.4932 42 1 6.9371 -1.3983 0.0044 43 1 4.7814 -2.5653 0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = 186.592553 kcal Electronic energy + Delta-G solvation = -28469.156804 eV Core-core repulsion = 24516.743950 eV Total energy + Delta-G solvation = -3952.412854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.59912 -41.29932 -38.94659 -37.74735 -35.36356 -33.71628 -32.36919 -32.04288 -31.53947 -31.05386 -29.91231 -28.33265 -27.67825 -26.72211 -24.09028 -23.53942 -22.46975 -22.14404 -21.45260 -20.49397 -19.98928 -18.18288 -17.80383 -17.68209 -17.11068 -16.55148 -16.32058 -15.39617 -15.27285 -14.96109 -14.71874 -14.39594 -14.17929 -14.02007 -13.85088 -13.68973 -13.29131 -13.22475 -13.10381 -12.95886 -12.72240 -12.45920 -12.22855 -12.17334 -12.04804 -11.31355 -11.10902 -11.06832 -10.93821 -10.71061 -10.30758 -10.16793 -9.82697 -9.70867 -9.50859 -8.74029 -8.72343 -8.60730 -8.07203 -7.86099 -7.30098 -6.21649 -4.24339 1.00631 1.07623 1.57856 1.92283 2.53881 2.78591 2.88933 2.95539 3.03889 3.21808 3.27309 3.29272 3.84116 4.26679 4.31856 4.44003 4.49170 4.63668 4.65091 4.85997 4.88082 4.92294 5.00858 5.09484 5.14656 5.20707 5.31780 5.36608 5.43010 5.49137 5.60730 5.64127 5.89717 5.98999 6.13546 6.26360 6.31226 6.49757 6.51231 6.61967 6.70939 6.84189 6.87859 7.04420 7.27519 7.30817 7.36738 7.41582 7.78770 8.08742 8.31159 8.71379 8.80478 9.33014 10.91029 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002232 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.709221 B =12542.911334 C =13418.903834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.074 3.926 3 C -0.199 4.199 4 C -0.086 4.086 5 C -0.059 4.059 6 C 0.131 3.869 7 N -0.645 5.645 8 C 0.503 3.497 9 N -0.602 5.602 10 C 0.367 3.633 11 N -0.551 5.551 12 C 0.367 3.633 13 C -0.329 4.329 14 C 0.072 3.928 15 N -0.237 5.237 16 N -0.332 5.332 17 C 0.237 3.763 18 C -0.538 4.538 19 H 0.078 0.922 20 C 0.080 3.920 21 N -0.887 5.887 22 Si 0.875 3.125 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.264 1.264 26 C -0.119 4.119 27 C -0.116 4.116 28 C 0.081 3.919 29 N -0.597 5.597 30 H 0.411 0.589 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.418 0.582 37 H 0.198 0.802 38 H 0.186 0.814 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.376 -24.745 0.313 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 C -0.224 4.224 4 C -0.091 4.091 5 C -0.081 4.081 6 C 0.035 3.965 7 N -0.270 5.270 8 C 0.252 3.748 9 N -0.331 5.331 10 C 0.074 3.926 11 N -0.276 5.276 12 C 0.119 3.881 13 C -0.346 4.346 14 C -0.124 4.124 15 N -0.052 5.052 16 N -0.118 5.118 17 C 0.118 3.882 18 C -0.576 4.576 19 H 0.096 0.904 20 C -0.124 4.124 21 N -0.524 5.524 22 Si 0.700 3.300 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.189 1.189 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.026 4.026 29 N -0.201 5.201 30 H 0.247 0.753 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.256 0.744 37 H 0.214 0.786 38 H 0.203 0.797 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.865 -23.516 -0.132 28.368 hybrid contribution 0.588 -0.799 -0.182 1.009 sum -15.277 -24.316 -0.314 28.718 Atomic orbital electron populations 1.20458 0.87896 1.03570 1.03077 1.20273 0.93278 0.85940 1.03850 1.21470 0.90325 0.97801 1.12822 1.18990 0.93316 0.91621 1.05183 1.20452 0.88752 1.00482 0.98406 1.17263 0.84758 0.90529 1.03926 1.41718 1.11935 1.22101 1.51285 1.17885 0.87081 0.84424 0.85422 1.68124 1.31074 1.18299 1.15584 1.24510 0.92745 0.84376 0.91003 1.67521 1.00054 1.35343 1.24638 1.18898 0.88194 0.89198 0.91797 1.19562 0.98507 1.02900 1.13673 1.23427 0.90439 0.98282 1.00208 1.76956 1.20919 1.00938 1.06434 1.48961 1.07662 1.20002 1.35155 1.20101 0.95377 0.77944 0.94763 1.21099 1.37454 0.90230 1.08838 0.90378 1.24770 0.95336 0.95486 0.96852 1.69872 1.45408 1.00071 1.37069 0.86876 0.80598 0.78738 0.83744 1.19481 1.20532 1.18876 1.20495 0.97392 0.92280 1.03877 1.19660 0.89119 0.98625 1.06330 1.18196 0.84363 0.94220 1.05789 1.41684 1.04034 1.07883 1.66539 0.75306 0.90542 0.91576 0.89691 0.83689 0.84508 0.74411 0.78578 0.79701 0.93009 0.93037 0.92141 0.85563 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.39 36.00 0.37 -0.06 16 2 C 0.07 0.62 7.08 -81.78 -0.58 0.04 16 3 C -0.20 -2.10 10.95 -37.66 -0.41 -2.52 16 4 C -0.09 -1.06 6.37 -105.14 -0.67 -1.73 16 5 C -0.06 -0.78 8.64 -39.06 -0.34 -1.12 16 6 C 0.13 1.56 6.26 -83.67 -0.52 1.04 16 7 N -0.64 -7.67 5.46 -9.64 -0.05 -7.72 16 8 C 0.50 7.81 7.25 -154.76 -1.12 6.69 16 9 N -0.60 -9.65 7.45 -13.60 -0.10 -9.75 16 10 C 0.37 6.10 12.24 -92.11 -1.13 4.97 16 11 N -0.55 -11.37 10.47 -13.97 -0.15 -11.51 16 12 C 0.37 7.92 8.04 -156.23 -1.26 6.67 16 13 C -0.33 -5.85 6.14 -106.81 -0.66 -6.50 16 14 C 0.07 1.18 11.88 -17.11 -0.20 0.97 16 15 N -0.24 -4.94 12.45 30.80 0.38 -4.55 16 16 N -0.33 -7.72 3.63 -61.64 -0.22 -7.95 16 17 C 0.24 5.92 5.26 -5.19 -0.03 5.89 16 18 C -0.54 -15.61 9.94 -34.44 -0.34 -15.95 16 19 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 20 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 21 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 22 Si 0.87 20.87 27.47 -169.99 -4.67 16.21 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 26 C -0.12 -1.16 9.93 -39.35 -0.39 -1.55 16 27 C -0.12 -1.07 10.06 -39.47 -0.40 -1.47 16 28 C 0.08 0.85 7.27 -83.90 -0.61 0.24 16 29 N -0.60 -4.82 6.08 -6.92 -0.04 -4.86 16 30 H 0.41 2.03 8.96 -40.82 -0.37 1.67 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.14 2.01 6.48 -52.49 -0.34 1.67 16 36 H 0.42 3.71 8.70 -40.82 -0.36 3.35 16 37 H 0.20 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.19 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 40 H 0.05 1.27 7.57 -51.93 -0.39 0.87 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -36.19 370.88 -11.67 -47.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.80 Total: 5.12 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -8.38 Total: -2.18 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: 0.59 Total: -72.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.19 -11.67 -47.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.446 kcal (2) G-P(sol) polarization free energy of solvation -36.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds