Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37663 * 119.74374 * 2 1 4 4 C 1.39688 * 119.77733 * 180.02562 * 3 2 1 5 5 N 1.35865 * 133.50984 * 179.97438 * 4 3 2 6 6 C 1.30031 * 109.74852 * 180.02562 * 5 4 3 7 7 N 1.36477 * 110.05176 * 359.97438 * 6 5 4 8 8 C 1.39003 * 126.40399 * 180.02562 * 7 6 5 9 9 N 1.32723 * 120.80219 * 133.04190 * 8 7 6 10 10 C 1.32124 * 121.22301 * 179.97438 * 9 8 7 11 11 N 1.31508 * 122.63776 * 0.02562 * 10 9 8 12 12 C 1.33106 * 120.64870 * 359.97438 * 11 10 9 13 13 C 1.40624 * 120.80141 * 312.76818 * 8 7 6 14 14 C 1.41211 * 134.71985 * 0.69973 * 13 8 7 15 15 N 1.30236 * 108.47500 * 179.52863 * 14 13 8 16 16 N 1.36331 * 134.64982 * 179.97438 * 12 11 10 17 17 C 1.46496 * 125.87054 * 0.02603 * 16 12 11 18 18 C 1.50701 * 109.47682 * 89.99583 * 17 16 12 19 19 H 1.07999 * 119.99757 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00023 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47489 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47331 * 120.00446 * 22 20 18 25 25 H 1.48508 * 109.47162 * 240.00363 * 22 20 18 26 26 C 1.38407 * 107.19541 * 359.73004 * 7 6 5 27 27 C 1.38691 * 134.05218 * 179.49397 * 26 7 6 28 28 C 1.37917 * 119.83776 * 180.49510 * 27 26 7 29 29 C 1.50697 * 119.78215 * 180.27730 * 28 27 26 30 30 H 1.08999 * 109.46915 * 270.02141 * 1 2 3 31 31 H 1.08993 * 109.47481 * 30.02030 * 1 2 3 32 32 H 1.09001 * 109.47480 * 150.02242 * 1 2 3 33 33 H 1.08000 * 120.10998 * 359.97438 * 3 2 1 34 34 H 1.08007 * 124.97588 * 180.02562 * 6 5 4 35 35 H 1.07999 * 118.67883 * 179.97438 * 10 9 8 36 36 H 1.07996 * 125.76375 * 359.29957 * 14 13 8 37 37 H 1.09006 * 109.47299 * 209.99671 * 17 16 12 38 38 H 1.08998 * 109.47138 * 329.99412 * 17 16 12 39 39 H 0.96993 * 119.99953 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.07682 * 0.77071 * 27 26 7 41 41 H 1.08997 * 109.47541 * 90.00362 * 29 28 27 42 42 H 1.09005 * 109.47127 * 210.00510 * 29 28 27 43 43 H 1.09003 * 109.47338 * 330.00115 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.1953 0.0000 4 6 3.5868 1.1961 -0.0005 5 7 4.5216 2.1820 -0.0011 6 6 5.7120 1.6588 -0.0020 7 7 5.6245 0.2968 -0.0015 8 6 6.6881 -0.5982 -0.0017 9 7 6.7075 -1.6308 0.8319 10 6 7.7139 -2.4868 0.8385 11 7 8.7468 -2.3734 0.0324 12 6 8.8197 -1.3709 -0.8401 13 6 7.7668 -0.4346 -0.8889 14 6 8.0998 0.5096 -1.8848 15 7 9.2469 0.1756 -2.4031 16 7 9.7264 -0.9847 -1.7822 17 6 10.9855 -1.6664 -2.0921 18 6 10.7485 -2.6948 -3.1679 19 1 9.7589 -2.8272 -3.5798 20 6 11.7952 -3.4661 -3.6269 21 7 13.0003 -3.3046 -3.1256 22 14 11.5014 -4.7404 -4.9607 23 1 10.0692 -4.7256 -5.3528 24 1 12.3421 -4.4224 -6.1428 25 1 11.8594 -6.0868 -4.4465 26 6 4.2788 -0.0268 0.0060 27 6 3.5742 -1.2213 0.0012 28 6 2.1951 -1.2045 0.0016 29 6 1.4308 -2.5033 0.0027 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6476 2.1292 -0.0004 34 1 6.6349 2.2198 -0.0022 35 1 7.6877 -3.3124 1.5344 36 1 7.5022 1.3624 -2.1711 37 1 11.7170 -0.9375 -2.4412 38 1 11.3624 -2.1586 -1.1956 39 1 13.7366 -3.8469 -3.4488 40 1 4.1042 -2.1624 0.0017 41 1 1.2467 -2.8157 1.0305 42 1 0.4793 -2.3653 -0.5111 43 1 2.0133 -3.2682 -0.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = 193.808200 kcal Electronic energy + Delta-G solvation = -29106.315716 eV Core-core repulsion = 25154.215755 eV Total energy + Delta-G solvation = -3952.099960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.139 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.66195 -41.63818 -38.87182 -38.36358 -35.24816 -33.88932 -32.68372 -32.17883 -31.73595 -31.57961 -30.00430 -27.61891 -27.15448 -26.44823 -24.85195 -24.00563 -22.93719 -22.60008 -21.75535 -21.05786 -20.12368 -18.36483 -17.98480 -17.04770 -16.88413 -16.70697 -15.85467 -15.67642 -15.22475 -15.02527 -14.79551 -14.68694 -14.33545 -14.14885 -14.02506 -13.64676 -13.63085 -13.33622 -13.01117 -12.74217 -12.39438 -12.29475 -11.91299 -11.75659 -11.62105 -11.57819 -11.40963 -11.21279 -11.06175 -10.97445 -10.65655 -10.48393 -10.41100 -10.21237 -9.90818 -9.27481 -9.10196 -8.74492 -8.42441 -8.29123 -8.09613 -6.36779 -4.44544 0.31769 0.84622 1.24235 1.43202 2.09737 2.50370 2.61174 2.66912 3.14429 3.22172 3.27651 3.63588 3.77573 3.98014 4.06095 4.18790 4.25560 4.30564 4.52541 4.63825 4.68076 4.86626 4.91092 4.97559 5.02474 5.09262 5.23369 5.30605 5.33930 5.38772 5.44639 5.52034 5.54350 5.66338 5.86004 5.89728 6.00463 6.22136 6.29248 6.35412 6.46329 6.69555 6.75194 6.80455 6.85373 6.99326 7.32657 7.58641 7.60299 7.71592 7.79602 8.21243 8.57931 9.21803 10.71554 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002655 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.102803 B =10544.299637 C =11225.187015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.065 4.065 4 C 0.046 3.954 5 N -0.481 5.481 6 C 0.279 3.721 7 N -0.439 5.439 8 C 0.466 3.534 9 N -0.561 5.561 10 C 0.350 3.650 11 N -0.509 5.509 12 C 0.355 3.645 13 C -0.284 4.284 14 C 0.065 3.935 15 N -0.215 5.215 16 N -0.324 5.324 17 C 0.261 3.739 18 C -0.539 4.539 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.909 3.091 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.066 3.934 27 C -0.091 4.091 28 C -0.069 4.069 29 C -0.114 4.114 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.219 0.781 35 H 0.209 0.791 36 H 0.192 0.808 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.269 0.731 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 5.739 8.297 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.084 4.084 4 C -0.070 4.070 5 N -0.198 5.198 6 C -0.006 4.006 7 N -0.129 5.129 8 C 0.219 3.781 9 N -0.281 5.281 10 C 0.056 3.944 11 N -0.229 5.229 12 C 0.105 3.895 13 C -0.301 4.301 14 C -0.131 4.131 15 N -0.031 5.031 16 N -0.111 5.111 17 C 0.144 3.856 18 C -0.578 4.578 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.040 4.040 27 C -0.111 4.111 28 C -0.071 4.071 29 C -0.171 4.171 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.235 0.765 35 H 0.225 0.775 36 H 0.209 0.791 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.276 5.911 7.912 21.658 hybrid contribution -0.038 -1.126 -0.650 1.300 sum -19.314 4.786 7.261 21.182 Atomic orbital electron populations 1.20809 0.90719 1.02913 1.02385 1.19481 0.96077 0.91786 1.02076 1.20034 0.89755 0.98038 1.00592 1.18967 0.93996 0.87952 1.06082 1.70478 0.97701 1.30594 1.21029 1.25592 0.98853 0.78411 0.97747 1.42507 1.03460 1.06497 1.60451 1.17600 0.84140 0.88055 0.88305 1.67918 1.30571 1.06078 1.23558 1.24711 0.82053 0.94632 0.92955 1.67526 1.27198 1.21570 1.06595 1.19027 0.88965 0.90424 0.91100 1.19901 1.00280 1.04265 1.05642 1.23640 0.94887 0.99696 0.94859 1.77038 1.11182 0.98622 1.16226 1.49719 1.18496 1.18617 1.24247 1.19966 0.74995 0.91953 0.98652 1.21238 0.96133 1.19428 1.20997 0.91904 1.24898 0.94580 0.97154 0.96903 1.69914 1.00153 1.40212 1.42277 0.86263 0.78568 0.80685 0.80947 1.19655 1.20479 1.20461 1.18810 0.82161 0.97031 1.05948 1.19882 0.92872 0.95424 1.02942 1.19478 0.92194 0.95217 1.00202 1.20843 0.99915 0.93746 1.02552 0.91153 0.91548 0.91051 0.85130 0.76479 0.77487 0.79132 0.92259 0.91907 0.92101 0.85536 0.90907 0.90902 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.58 36.00 0.35 -0.40 16 2 C -0.09 -0.92 5.87 -104.65 -0.61 -1.53 16 3 C -0.06 -0.74 9.73 -39.25 -0.38 -1.12 16 4 C 0.05 0.63 7.22 -84.68 -0.61 0.02 16 5 N -0.48 -6.55 11.27 -11.95 -0.13 -6.69 16 6 C 0.28 3.41 11.53 -89.44 -1.03 2.37 16 7 N -0.44 -6.19 2.97 -61.06 -0.18 -6.37 16 8 C 0.47 7.21 7.02 -154.18 -1.08 6.13 16 9 N -0.56 -8.55 10.39 -13.48 -0.14 -8.69 16 10 C 0.35 5.23 12.24 -92.12 -1.13 4.10 16 11 N -0.51 -9.62 10.47 -13.95 -0.15 -9.76 16 12 C 0.36 7.12 8.05 -156.25 -1.26 5.87 16 13 C -0.28 -4.81 6.00 -106.83 -0.64 -5.45 16 14 C 0.06 1.02 11.55 -17.10 -0.20 0.82 16 15 N -0.22 -4.23 12.45 30.81 0.38 -3.85 16 16 N -0.32 -7.14 3.63 -61.63 -0.22 -7.36 16 17 C 0.26 6.48 6.19 -5.19 -0.03 6.44 16 18 C -0.54 -14.61 9.39 -34.44 -0.32 -14.94 16 19 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 21 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 22 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.07 0.94 6.78 -83.87 -0.57 0.37 16 27 C -0.09 -1.17 9.65 -39.53 -0.38 -1.55 16 28 C -0.07 -0.74 5.88 -104.56 -0.62 -1.35 16 29 C -0.11 -0.88 9.59 36.00 0.35 -0.53 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 5.91 -51.93 -0.31 0.09 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.22 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.21 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.19 2.18 7.81 -52.49 -0.41 1.77 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 40 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.45 5.91 -51.93 -0.31 0.14 16 43 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -31.94 373.76 -12.16 -44.09 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.79 Total: -0.03 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -8.27 Total: 1.02 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: 0.29 Total: -66.60 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -12.16 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.903 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds