Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37663 * 119.74374 * 2 1 4 4 C 1.39688 * 119.77733 * 180.02562 * 3 2 1 5 5 N 1.35865 * 133.50984 * 179.97438 * 4 3 2 6 6 C 1.30031 * 109.74852 * 180.02562 * 5 4 3 7 7 N 1.36477 * 110.05176 * 359.97438 * 6 5 4 8 8 C 1.39003 * 126.40399 * 180.02562 * 7 6 5 9 9 N 1.32723 * 120.80219 * 133.04190 * 8 7 6 10 10 C 1.32124 * 121.22301 * 179.97438 * 9 8 7 11 11 N 1.31508 * 122.63776 * 0.02562 * 10 9 8 12 12 C 1.33106 * 120.64870 * 359.97438 * 11 10 9 13 13 C 1.40624 * 120.80141 * 312.76818 * 8 7 6 14 14 C 1.41211 * 134.71985 * 0.69973 * 13 8 7 15 15 N 1.30236 * 108.47500 * 179.52863 * 14 13 8 16 16 N 1.36331 * 134.64982 * 179.97438 * 12 11 10 17 17 C 1.46496 * 125.87054 * 0.02603 * 16 12 11 18 18 C 1.50701 * 109.47682 * 89.99583 * 17 16 12 19 19 H 1.07999 * 119.99757 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00023 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47489 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47331 * 120.00446 * 22 20 18 25 25 H 1.48508 * 109.47162 * 240.00363 * 22 20 18 26 26 C 1.38407 * 107.19541 * 359.73004 * 7 6 5 27 27 C 1.38691 * 134.05218 * 179.49397 * 26 7 6 28 28 C 1.37917 * 119.83776 * 180.49510 * 27 26 7 29 29 C 1.50697 * 119.78215 * 180.27730 * 28 27 26 30 30 H 1.08999 * 109.46915 * 270.02141 * 1 2 3 31 31 H 1.08993 * 109.47481 * 30.02030 * 1 2 3 32 32 H 1.09001 * 109.47480 * 150.02242 * 1 2 3 33 33 H 1.08000 * 120.10998 * 359.97438 * 3 2 1 34 34 H 1.08007 * 124.97588 * 180.02562 * 6 5 4 35 35 H 1.07999 * 118.67883 * 179.97438 * 10 9 8 36 36 H 1.07996 * 125.76375 * 359.29957 * 14 13 8 37 37 H 1.09006 * 109.47299 * 209.99671 * 17 16 12 38 38 H 1.08998 * 109.47138 * 329.99412 * 17 16 12 39 39 H 0.96993 * 119.99953 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.07682 * 0.77071 * 27 26 7 41 41 H 1.08997 * 109.47541 * 90.00362 * 29 28 27 42 42 H 1.09005 * 109.47127 * 210.00510 * 29 28 27 43 43 H 1.09003 * 109.47338 * 330.00115 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.1953 0.0000 4 6 3.5868 1.1961 -0.0005 5 7 4.5216 2.1820 -0.0011 6 6 5.7120 1.6588 -0.0020 7 7 5.6245 0.2968 -0.0015 8 6 6.6881 -0.5982 -0.0017 9 7 6.7075 -1.6308 0.8319 10 6 7.7139 -2.4868 0.8385 11 7 8.7468 -2.3734 0.0324 12 6 8.8197 -1.3709 -0.8401 13 6 7.7668 -0.4346 -0.8889 14 6 8.0998 0.5096 -1.8848 15 7 9.2469 0.1756 -2.4031 16 7 9.7264 -0.9847 -1.7822 17 6 10.9855 -1.6664 -2.0921 18 6 10.7485 -2.6948 -3.1679 19 1 9.7589 -2.8272 -3.5798 20 6 11.7952 -3.4661 -3.6269 21 7 13.0003 -3.3046 -3.1256 22 14 11.5014 -4.7404 -4.9607 23 1 10.0692 -4.7256 -5.3528 24 1 12.3421 -4.4224 -6.1428 25 1 11.8594 -6.0868 -4.4465 26 6 4.2788 -0.0268 0.0060 27 6 3.5742 -1.2213 0.0012 28 6 2.1951 -1.2045 0.0016 29 6 1.4308 -2.5033 0.0027 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6476 2.1292 -0.0004 34 1 6.6349 2.2198 -0.0022 35 1 7.6877 -3.3124 1.5344 36 1 7.5022 1.3624 -2.1711 37 1 11.7170 -0.9375 -2.4412 38 1 11.3624 -2.1586 -1.1956 39 1 13.7366 -3.8469 -3.4488 40 1 4.1042 -2.1624 0.0017 41 1 1.2467 -2.8157 1.0305 42 1 0.4793 -2.3653 -0.5111 43 1 2.0133 -3.2682 -0.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = 178.836329 kcal Electronic energy + Delta-G solvation = -29106.964945 eV Core-core repulsion = 25154.215755 eV Total energy + Delta-G solvation = -3952.749190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.75710 -42.89045 -40.17825 -39.24255 -36.47598 -35.70465 -33.95755 -33.32950 -33.02551 -32.50921 -31.23566 -29.36163 -27.99382 -27.28264 -26.08232 -25.68730 -24.41141 -23.43384 -22.96714 -21.97896 -21.38739 -19.52318 -19.38415 -18.87990 -18.32994 -17.65754 -17.04468 -16.83257 -16.59668 -16.43024 -16.03638 -15.66106 -15.49568 -15.17339 -15.08117 -14.85998 -14.73711 -14.51803 -14.14705 -13.78849 -13.54081 -13.43607 -13.14018 -12.96498 -12.92926 -12.82153 -12.69509 -12.40990 -12.39749 -12.18347 -12.06849 -11.92378 -11.86138 -11.57451 -11.19426 -10.80186 -10.59129 -10.43786 -9.89970 -9.22970 -9.09080 -8.41327 -6.57784 -0.88850 -0.15003 0.00958 0.44535 0.97464 1.12870 1.26645 1.32928 1.34265 1.46905 1.62868 2.27678 2.48345 2.73242 2.82355 2.90887 2.99025 3.05892 3.20886 3.28787 3.58945 3.71606 3.92091 3.97150 4.10589 4.18683 4.25221 4.37246 4.51799 4.67337 4.74564 4.78183 4.78533 4.84665 4.91146 4.97256 4.99811 5.18437 5.20912 5.29346 5.32944 5.38844 5.43410 5.53532 5.67176 5.70024 5.80264 5.89438 5.99451 6.33996 6.48424 6.62378 6.91262 7.12764 8.66993 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002655 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.102803 B =10544.299637 C =11225.187015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.073 4.073 4 C 0.025 3.975 5 N -0.494 5.494 6 C 0.280 3.720 7 N -0.446 5.446 8 C 0.483 3.517 9 N -0.562 5.562 10 C 0.364 3.636 11 N -0.549 5.549 12 C 0.337 3.663 13 C -0.289 4.289 14 C 0.097 3.903 15 N -0.255 5.255 16 N -0.356 5.356 17 C 0.281 3.719 18 C -0.555 4.555 19 H 0.046 0.954 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.041 3.959 27 C -0.112 4.112 28 C -0.066 4.066 29 C -0.114 4.114 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.250 0.750 36 H 0.237 0.763 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.275 0.725 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.777 5.694 8.512 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.093 4.093 4 C -0.090 4.090 5 N -0.211 5.211 6 C -0.005 4.005 7 N -0.137 5.137 8 C 0.235 3.765 9 N -0.283 5.283 10 C 0.073 3.927 11 N -0.271 5.271 12 C 0.088 3.912 13 C -0.306 4.306 14 C -0.099 4.099 15 N -0.069 5.069 16 N -0.142 5.142 17 C 0.163 3.837 18 C -0.593 4.593 19 H 0.065 0.935 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.063 4.063 27 C -0.133 4.133 28 C -0.067 4.067 29 C -0.170 4.170 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.266 0.734 35 H 0.265 0.735 36 H 0.253 0.747 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.561 5.889 8.144 24.698 hybrid contribution 0.698 -1.058 -0.569 1.389 sum -21.863 4.831 7.575 23.637 Atomic orbital electron populations 1.20901 0.87968 1.04218 1.03602 1.19902 0.97970 0.90945 1.00102 1.20382 0.89107 0.99427 1.00369 1.19323 0.94963 0.87772 1.06922 1.70473 0.98239 1.30839 1.21583 1.26277 0.99690 0.77814 0.96670 1.42576 1.03111 1.06823 1.61216 1.17633 0.83849 0.87817 0.87170 1.68084 1.30474 1.06224 1.23481 1.25569 0.80555 0.94775 0.91835 1.67571 1.29165 1.22406 1.07925 1.19343 0.89390 0.91495 0.91015 1.19926 1.00091 1.04105 1.06476 1.24343 0.93345 0.99532 0.92640 1.76999 1.13196 0.98719 1.17960 1.49318 1.18600 1.20086 1.26206 1.19318 0.76417 0.91043 0.96928 1.21381 0.95561 1.20545 1.21858 0.93521 1.25731 0.94244 0.98895 0.98905 1.69996 1.00876 1.41108 1.43383 0.85290 0.78233 0.78414 0.78422 1.19964 1.19358 1.19387 1.19102 0.82167 0.97798 1.07244 1.20021 0.93972 0.94760 1.04549 1.19890 0.91596 0.96915 0.98324 1.20930 1.00354 0.92082 1.03621 0.89809 0.90453 0.89619 0.83526 0.73373 0.73487 0.74710 0.94228 0.94036 0.91579 0.86406 0.89638 0.88827 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.58 71.23 0.68 -0.38 16 2 C -0.09 -1.51 5.87 -19.89 -0.12 -1.63 16 3 C -0.07 -1.53 9.73 22.48 0.22 -1.31 16 4 C 0.03 0.66 7.22 39.42 0.28 0.94 16 5 N -0.49 -12.76 11.27 -191.72 -2.16 -14.92 16 6 C 0.28 6.36 11.53 179.94 2.07 8.44 16 7 N -0.45 -12.06 2.97 -347.10 -1.03 -13.08 16 8 C 0.48 14.57 7.02 133.33 0.94 15.50 16 9 N -0.56 -16.66 10.39 -196.56 -2.04 -18.70 16 10 C 0.36 10.66 12.24 180.87 2.21 12.87 16 11 N -0.55 -21.18 10.47 -198.05 -2.07 -23.25 16 12 C 0.34 13.89 8.05 134.20 1.08 14.97 16 13 C -0.29 -9.72 6.00 -21.29 -0.13 -9.84 16 14 C 0.10 3.00 11.55 85.66 0.99 3.99 16 15 N -0.25 -10.25 12.45 -56.44 -0.70 -10.95 16 16 N -0.36 -16.37 3.63 -348.88 -1.27 -17.64 16 17 C 0.28 14.83 6.19 85.63 0.53 15.36 16 18 C -0.56 -31.33 9.39 25.60 0.24 -31.09 16 19 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 20 C 0.02 1.30 5.46 84.65 0.46 1.76 16 21 N -0.92 -52.01 13.29 21.45 0.28 -51.72 16 22 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 C 0.04 1.14 6.78 38.77 0.26 1.40 16 27 C -0.11 -2.79 9.65 22.30 0.22 -2.58 16 28 C -0.07 -1.26 5.88 -19.82 -0.12 -1.38 16 29 C -0.11 -1.43 9.59 71.23 0.68 -0.75 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.09 0.60 5.91 -2.39 -0.01 0.58 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.25 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.25 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.24 4.76 7.81 -2.91 -0.02 4.74 16 37 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 0.79 5.91 -2.38 -0.01 0.78 16 43 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 Total: -1.00 -72.60 373.76 4.62 -67.98 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.07 Total: 10.65 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 10.51 Total: 26.28 kcal Atomic # 7 Polarization: -141.29 SS G_CDS: -8.99 Total: -150.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.60 4.62 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.816 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds