Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48498 * 109.46797 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.47001 * 29.99974 * 3 2 1 6 6 H 1.48499 * 109.46881 * 150.00096 * 3 2 1 7 7 C 1.37877 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00370 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47423 * 179.97438 * 9 7 2 11 11 N 1.40060 * 125.87330 * 269.98172 * 10 9 7 12 12 C 1.30247 * 109.69566 * 180.02562 * 11 10 9 13 13 C 1.41163 * 108.47117 * 359.97438 * 12 11 10 14 14 C 1.36317 * 125.87200 * 89.99647 * 10 9 7 15 15 N 1.33194 * 134.61921 * 0.02562 * 14 10 9 16 16 C 1.31502 * 120.68167 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.65168 * 359.97438 * 16 15 14 18 18 C 1.32853 * 121.18822 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81018 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00173 * 359.97438 * 19 18 17 21 21 C 1.53004 * 109.47237 * 178.33349 * 20 19 18 22 22 C 1.50697 * 115.54842 * 279.62823 * 21 20 19 23 23 C 1.38232 * 120.00001 * 113.77802 * 22 21 20 24 24 C 1.38241 * 119.99937 * 179.74678 * 23 22 21 25 25 C 1.38233 * 119.99622 * 0.51968 * 24 23 22 26 26 C 1.38234 * 120.00526 * 359.75005 * 25 24 23 27 27 C 1.38232 * 119.99544 * 359.97438 * 26 25 24 28 28 C 1.53000 * 117.49808 * 133.91902 * 21 20 19 29 29 C 1.52997 * 60.00132 * 252.51020 * 28 21 20 30 30 H 0.97000 * 120.00115 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47220 * 59.99755 * 9 7 2 32 32 H 1.09000 * 109.47174 * 300.00082 * 9 7 2 33 33 H 1.08005 * 125.76963 * 179.97438 * 12 11 10 34 34 H 1.08002 * 118.67441 * 179.97438 * 16 15 14 35 35 H 0.97002 * 120.00136 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47354 * 298.33330 * 20 19 18 37 37 H 1.09001 * 109.47174 * 58.33657 * 20 19 18 38 38 H 1.08004 * 120.00033 * 359.97438 * 23 22 21 39 39 H 1.08002 * 120.00101 * 180.29473 * 24 23 22 40 40 H 1.08004 * 119.99188 * 179.77542 * 25 24 23 41 41 H 1.07994 * 119.99886 * 180.02562 * 26 25 24 42 42 H 1.08005 * 119.99935 * 179.97438 * 27 26 25 43 43 H 1.08996 * 117.50134 * 0.02562 * 28 21 20 44 44 H 1.08997 * 117.49879 * 145.01862 * 28 21 20 45 45 H 1.08996 * 117.50012 * 252.51109 * 29 28 21 46 46 H 1.09000 * 117.51736 * 107.47880 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7361 -4.2368 -1.1344 12 6 3.5486 -5.1879 -0.7715 13 6 3.5858 -5.2304 0.6390 14 6 2.7221 -4.2198 1.1051 15 7 2.5789 -4.0528 2.4188 16 6 3.2314 -4.8165 3.2674 17 7 4.0514 -5.7765 2.8776 18 6 4.2609 -6.0211 1.5887 19 7 5.1201 -7.0261 1.1900 20 6 5.8140 -7.8374 2.1932 21 6 6.6653 -8.8977 1.4917 22 6 5.9216 -10.1207 1.0203 23 6 5.8034 -10.3791 -0.3325 24 6 5.1257 -11.5038 -0.7648 25 6 4.5570 -12.3643 0.1556 26 6 4.6703 -12.1030 1.5082 27 6 5.3529 -10.9814 1.9406 28 6 8.1014 -9.0894 1.9832 29 6 7.8376 -8.4109 0.6376 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 4.1006 -5.8348 -1.4372 34 1 3.0914 -4.6526 4.3257 35 1 5.2642 -7.1948 0.2457 36 1 6.4566 -7.1970 2.7973 37 1 5.0813 -8.3262 2.8353 38 1 6.2437 -9.7043 -1.0517 39 1 5.0374 -11.7082 -1.8216 40 1 4.0244 -13.2410 -0.1823 41 1 4.2264 -12.7755 2.2272 42 1 5.4412 -10.7769 2.9974 43 1 8.4397 -8.4604 2.8067 44 1 8.5086 -10.1003 1.9659 45 1 8.0712 -8.9754 -0.2651 46 1 8.0022 -7.3352 0.5751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = 166.631412 kcal Electronic energy + Delta-G solvation = -29133.881921 eV Core-core repulsion = 25218.717919 eV Total energy + Delta-G solvation = -3915.164002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.34916 -40.21663 -38.45829 -37.69690 -35.59341 -33.67644 -32.08753 -31.24914 -31.22504 -30.90541 -29.80027 -27.40809 -26.55655 -23.93679 -23.62407 -23.41017 -23.05255 -22.13875 -22.09560 -20.09260 -19.80837 -17.94692 -17.38659 -17.18266 -16.65096 -16.35130 -15.88328 -15.49092 -15.11763 -15.00010 -14.85785 -14.50975 -14.27265 -14.04186 -13.76774 -13.67246 -13.61038 -13.28161 -13.02568 -12.78981 -12.45182 -12.12843 -11.87382 -11.64343 -11.49355 -11.32403 -11.22564 -11.01889 -10.95645 -10.75645 -10.72327 -10.45350 -10.26819 -10.04932 -9.80755 -9.22765 -9.19127 -8.98268 -8.63870 -8.57529 -8.17831 -7.58893 -6.20113 -4.26447 1.04145 1.11813 1.35113 1.98546 2.86489 3.03652 3.11619 3.25539 3.31012 3.37231 3.42605 3.57701 4.15531 4.25425 4.32893 4.43753 4.47743 4.63785 4.66443 4.73972 4.76309 4.77959 4.84512 5.02118 5.15317 5.16106 5.22591 5.26265 5.31447 5.36111 5.48394 5.54229 5.57100 5.68554 5.73830 5.75786 5.76374 5.79712 6.19578 6.23517 6.29841 6.36285 6.70087 6.71918 6.96243 7.05561 7.13452 7.29792 7.54064 7.74680 7.92879 7.96172 8.26478 8.74165 8.86542 9.38403 10.88142 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.002258 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.351133 B =12399.591929 C =12697.061477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.244 5.244 12 C 0.069 3.931 13 C -0.338 4.338 14 C 0.363 3.637 15 N -0.555 5.555 16 C 0.367 3.633 17 N -0.619 5.619 18 C 0.510 3.490 19 N -0.702 5.702 20 C 0.175 3.825 21 C -0.111 4.111 22 C -0.044 4.044 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.108 4.108 28 C -0.150 4.150 29 C -0.166 4.166 30 H 0.268 0.732 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.615 -24.821 2.977 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.060 5.060 12 C -0.126 4.126 13 C -0.356 4.356 14 C 0.116 3.884 15 N -0.280 5.280 16 C 0.073 3.927 17 N -0.350 5.350 18 C 0.257 3.743 19 N -0.335 5.335 20 C 0.052 3.948 21 C -0.112 4.112 22 C -0.044 4.044 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.188 4.188 29 C -0.203 4.203 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.198 0.802 34 H 0.211 0.789 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.635 -23.763 2.968 27.557 hybrid contribution 0.833 0.341 -0.577 1.070 sum 14.469 -23.422 2.390 27.634 Atomic orbital electron populations 1.69919 1.05999 1.27606 1.49408 1.24899 0.94981 0.99349 0.94480 0.86342 0.79723 0.82244 0.78274 1.20361 1.20798 1.19768 1.21246 0.93536 0.89689 1.52637 0.92076 1.19784 0.85700 0.79866 0.99959 1.49445 1.35871 1.27762 0.98808 1.76931 1.11539 1.08140 1.09379 1.23342 0.99088 0.97845 0.92358 1.19605 1.12666 1.07979 0.95313 1.18933 0.91102 0.89890 0.88517 1.67509 1.29624 1.30899 0.99999 1.24395 0.85170 0.84009 0.99155 1.67941 1.26841 1.25733 1.14530 1.17892 0.84102 0.84072 0.88209 1.44250 1.46103 1.33958 1.09148 1.20728 0.94509 0.89979 0.89614 1.20401 0.89509 0.95838 1.05405 1.18959 0.98097 0.94216 0.93168 1.21044 0.99520 0.97503 0.95055 1.21146 0.98023 0.94824 0.99664 1.21173 0.99878 0.99703 0.93388 1.21145 0.99122 0.97519 0.95892 1.20982 0.97641 0.94339 0.99599 1.23054 0.95080 1.02458 0.98166 1.23093 1.00486 1.01555 0.95213 0.92278 0.92850 0.92266 0.80215 0.78923 0.75469 0.91055 0.90791 0.85983 0.86051 0.86219 0.86067 0.85950 0.87970 0.88328 0.88254 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.37 9.39 -34.44 -0.32 -15.69 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.26 7.14 6.19 -5.20 -0.03 7.10 16 10 N -0.33 -8.09 3.63 -61.64 -0.22 -8.31 16 11 N -0.24 -5.31 12.45 30.80 0.38 -4.92 16 12 C 0.07 1.19 11.87 -17.11 -0.20 0.99 16 13 C -0.34 -6.25 6.14 -106.82 -0.66 -6.91 16 14 C 0.36 8.16 8.04 -156.23 -1.26 6.90 16 15 N -0.56 -11.91 10.47 -13.97 -0.15 -12.06 16 16 C 0.37 6.27 12.24 -92.12 -1.13 5.14 16 17 N -0.62 -9.98 9.69 -13.62 -0.13 -10.11 16 18 C 0.51 8.00 7.55 -154.86 -1.17 6.83 16 19 N -0.70 -7.96 5.64 -60.09 -0.34 -8.30 16 20 C 0.18 1.66 5.61 -4.04 -0.02 1.64 16 21 C -0.11 -0.81 1.69 -155.66 -0.26 -1.08 16 22 C -0.04 -0.36 5.12 -104.63 -0.54 -0.90 16 23 C -0.11 -0.89 9.22 -39.58 -0.37 -1.25 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 27 C -0.11 -0.88 9.48 -39.58 -0.38 -1.26 16 28 C -0.15 -0.92 9.88 -26.73 -0.26 -1.18 16 29 C -0.17 -1.05 9.36 -26.73 -0.25 -1.30 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.18 2.16 8.06 -52.48 -0.42 1.73 16 34 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.41 3.97 8.30 -40.82 -0.34 3.63 16 36 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.12 0.79 7.06 -52.48 -0.37 0.41 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.56 7.18 -51.93 -0.37 0.19 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -33.60 396.92 -12.99 -46.60 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.10 Total: 2.69 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -8.14 Total: -3.16 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.28 Total: -68.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.60 -12.99 -46.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.228 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds