Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48506 * 109.47040 * 270.00156 * 3 2 1 5 5 H 1.48506 * 109.47109 * 29.99562 * 3 2 1 6 6 H 1.48496 * 109.47262 * 149.99963 * 3 2 1 7 7 C 1.37868 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47009 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46873 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54192 * 68.37806 * 11 10 9 13 13 O 1.42101 * 110.54505 * 291.62445 * 11 10 9 14 14 N 1.65607 * 104.44857 * 180.02562 * 11 10 9 15 15 C 1.46528 * 124.95390 * 89.97483 * 14 11 10 16 16 C 1.53749 * 105.19454 * 179.97438 * 15 14 11 17 17 C 1.51223 * 104.53542 * 0.02562 * 16 15 14 18 18 C 1.38634 * 108.53563 * 359.97438 * 17 16 15 19 19 C 1.39636 * 119.03040 * 180.02562 * 18 17 16 20 20 C 1.37871 * 120.27427 * 359.97214 * 19 18 17 21 21 C 1.38256 * 120.23519 * 359.79462 * 20 19 18 22 22 C 1.38124 * 130.98788 * 179.97438 * 17 16 15 23 23 C 1.50703 * 119.92438 * 359.97438 * 22 17 16 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 22 17 25 25 F 1.39900 * 109.47159 * 59.99999 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.99690 * 23 22 17 27 27 H 0.96998 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46933 * 59.99972 * 9 7 2 29 29 H 1.09003 * 109.46650 * 300.00276 * 9 7 2 30 30 H 1.09007 * 109.47108 * 60.00331 * 10 9 7 31 31 H 1.08994 * 109.47524 * 299.99889 * 10 9 7 32 32 H 1.09007 * 110.30018 * 61.07376 * 15 14 11 33 33 H 1.09001 * 110.30292 * 298.92919 * 15 14 11 34 34 H 1.08995 * 110.42740 * 241.23926 * 16 15 14 35 35 H 1.09006 * 110.41737 * 118.76381 * 16 15 14 36 36 H 1.07993 * 119.86036 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.87939 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.08523 * 180.25723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3384 -5.2330 0.0013 12 8 0.6641 -5.4200 -1.2354 13 8 0.6648 -5.4193 1.2386 14 7 2.5207 -6.3927 0.0020 15 6 3.1203 -6.9795 1.2032 16 6 4.1527 -7.9937 0.6840 17 6 4.0542 -7.8983 -0.8220 18 6 3.0911 -6.9537 -1.1417 19 6 2.8205 -6.6901 -2.4860 20 6 3.5042 -7.3615 -3.4773 21 6 4.4662 -8.2982 -3.1476 22 6 4.7364 -8.5683 -1.8187 23 6 5.7813 -9.5923 -1.4570 24 9 6.3295 -10.1320 -2.6256 25 9 5.1923 -10.6136 -0.7039 26 9 6.7917 -8.9823 -0.7060 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 2.8720 -3.6042 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 2.3592 -7.4857 1.7971 33 1 3.6123 -6.2082 1.7958 34 1 3.8996 -8.9995 1.0191 35 1 5.1541 -7.7214 1.0174 36 1 2.0727 -5.9572 -2.7502 37 1 3.2901 -7.1523 -4.5150 38 1 5.0032 -8.8197 -3.9261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097376256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = -194.039494 kcal Electronic energy + Delta-G solvation = -28824.113678 eV Core-core repulsion = 24150.645331 eV Total energy + Delta-G solvation = -4673.468346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -50.37284 -47.89928 -47.82219 -40.81380 -37.12181 -36.77126 -35.76301 -34.02804 -33.03025 -31.30339 -30.22638 -29.61867 -26.06399 -25.74096 -23.19654 -22.82702 -21.89770 -21.54798 -19.53186 -18.69734 -18.60549 -18.21350 -17.15178 -16.64330 -16.52899 -16.23712 -15.88962 -15.29557 -15.20304 -14.91243 -14.69579 -14.64233 -14.49542 -14.27579 -13.99819 -13.99192 -13.65259 -13.38484 -13.03940 -12.84959 -12.79879 -12.70742 -12.52299 -12.06800 -11.90664 -11.88409 -11.83065 -11.69109 -11.16420 -11.11394 -11.09894 -10.84272 -10.52985 -10.48331 -9.84948 -9.35396 -9.29064 -8.58895 -8.14963 -6.21080 -4.27526 0.33562 0.70701 1.05724 2.42780 2.57429 3.21079 3.23579 3.27759 3.30246 3.45934 3.80185 3.96794 4.01569 4.07202 4.20852 4.30034 4.40455 4.60614 4.81040 4.84470 5.01922 5.12876 5.14454 5.25753 5.33059 5.44564 5.50639 5.57746 5.61114 5.79191 5.83632 6.03562 6.18343 6.23903 6.29655 6.63412 7.15929 7.21108 7.71506 8.05876 8.75688 9.38034 10.89804 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002834 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.237606 B = 9877.515970 C =10213.514288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.580 4.580 11 S 2.583 3.417 12 O -0.948 6.948 13 O -0.947 6.947 14 N -0.942 5.942 15 C 0.115 3.885 16 C -0.091 4.091 17 C -0.094 4.094 18 C 0.175 3.825 19 C -0.121 4.121 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.144 4.144 23 C 0.510 3.490 24 F -0.178 7.178 25 F -0.177 7.177 26 F -0.176 7.176 27 H 0.266 0.734 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 -19.129 -3.164 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.714 4.714 11 S 2.684 3.316 12 O -0.938 6.938 13 O -0.937 6.937 14 N -0.762 5.762 15 C -0.009 4.009 16 C -0.129 4.129 17 C -0.099 4.099 18 C 0.076 3.924 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.124 4.124 22 C -0.146 4.146 23 C 0.456 3.544 24 F -0.159 7.159 25 F -0.158 7.158 26 F -0.158 7.158 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.244 -19.168 -3.002 21.939 hybrid contribution 1.163 1.068 0.106 1.582 sum 11.406 -18.100 -2.896 21.589 Atomic orbital electron populations 1.69948 1.06132 1.27377 1.49258 1.25064 0.94996 0.99603 0.94728 0.86444 0.79709 0.82677 0.78325 1.20377 1.20934 1.19703 1.20962 0.93101 0.89521 1.52598 0.91927 1.19009 0.92606 0.90350 0.99093 1.30446 1.13723 1.16601 1.10620 1.06286 0.74345 0.76392 0.74557 1.93535 1.70533 1.84988 1.44761 1.93571 1.70204 1.85044 1.44928 1.56794 1.55600 1.53757 1.10060 1.21916 0.96085 0.96622 0.86325 1.21274 1.00733 1.00871 0.90063 1.19719 0.97309 0.97620 0.95220 1.17917 0.93128 0.93768 0.87549 1.21388 1.01378 1.02176 0.89315 1.20891 0.94715 0.95030 0.99716 1.20872 0.98726 0.98835 0.93956 1.19185 1.00095 1.00494 0.94869 1.18288 0.80979 0.80690 0.74422 1.93160 1.86956 1.87226 1.48579 1.93209 1.83867 1.61804 1.76959 1.93212 1.62573 1.82946 1.77039 0.92404 0.94632 0.94673 0.85811 0.85783 0.88960 0.89364 0.88481 0.88373 0.82589 0.83932 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.95 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.58 -10.52 6.12 37.16 0.23 -10.29 16 11 S 2.58 44.50 5.56 -107.50 -0.60 43.91 16 12 O -0.95 -18.16 15.25 -57.54 -0.88 -19.04 16 13 O -0.95 -18.62 17.56 -57.54 -1.01 -19.63 16 14 N -0.94 -13.01 3.40 -58.12 -0.20 -13.20 16 15 C 0.11 1.23 7.08 -3.64 -0.03 1.20 16 16 C -0.09 -0.87 6.43 -27.24 -0.18 -1.04 16 17 C -0.09 -1.09 5.94 -104.26 -0.62 -1.71 16 18 C 0.17 2.33 6.59 -83.66 -0.55 1.77 16 19 C -0.12 -1.54 9.38 -39.19 -0.37 -1.91 16 20 C -0.09 -0.85 10.02 -39.71 -0.40 -1.25 16 21 C -0.10 -1.00 9.44 -39.56 -0.37 -1.37 16 22 C -0.14 -1.55 5.37 -104.65 -0.56 -2.11 16 23 C 0.51 5.16 3.09 36.01 0.11 5.27 16 24 F -0.18 -1.73 15.97 2.25 0.04 -1.70 16 25 F -0.18 -1.83 17.13 2.25 0.04 -1.79 16 26 F -0.18 -1.83 17.13 2.25 0.04 -1.79 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 31 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.16 2.14 6.11 -52.49 -0.32 1.82 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.14 1.03 7.16 -52.49 -0.38 0.66 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -32.76 347.65 -8.94 -41.70 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.04 Total: -0.74 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -3.28 Total: -23.62 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.54 Total: -38.19 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.89 Total: -38.66 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.28 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 44.50 SS G_CDS: -0.60 Total: 43.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.76 -8.94 -41.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097376256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.337 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds