Wall clock time and date at job start Tue Mar 31 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 H 1.08998 * 109.47434 * 55.00487 * 3 2 1 5 5 C 1.50706 * 109.47019 * 175.00001 * 3 2 1 6 6 H 1.08006 * 119.99770 * 119.72716 * 5 3 2 7 7 C 1.37876 * 120.00122 * 300.00125 * 5 3 2 8 8 N 1.31519 * 119.99994 * 359.72545 * 7 5 3 9 9 Si 1.86796 * 119.99968 * 179.72467 * 7 5 3 10 10 H 1.48499 * 109.47234 * 60.00190 * 9 7 5 11 11 H 1.48501 * 109.46757 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47467 * 299.99832 * 9 7 5 13 13 N 1.46500 * 109.47458 * 294.99978 * 3 2 1 14 14 C 1.34776 * 120.00012 * 85.00013 * 13 3 2 15 15 O 1.21582 * 120.00062 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00256 * 180.02562 * 14 13 3 17 17 C 1.39274 * 120.00242 * 175.50544 * 16 14 13 18 18 C 1.38853 * 120.16701 * 35.22703 * 17 16 14 19 19 C 1.38009 * 120.07228 * 179.97438 * 18 17 16 20 20 C 1.38568 * 120.40758 * 359.97438 * 19 18 17 21 21 C 1.37790 * 120.33078 * 0.02627 * 20 19 18 22 22 C 1.39695 * 119.92192 * 359.69881 * 21 20 19 23 23 C 1.47504 * 120.20356 * 180.30229 * 22 21 20 24 24 O 1.21592 * 119.99941 * 185.60241 * 23 22 21 25 25 N 1.34780 * 120.00099 * 5.59536 * 23 22 21 26 26 C 1.46490 * 120.00278 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.46949 * 60.00288 * 26 25 23 28 28 C 1.52996 * 109.47523 * 180.02562 * 26 25 23 29 29 C 1.53002 * 109.47504 * 300.00527 * 26 25 23 30 30 H 1.08999 * 109.47448 * 299.99907 * 1 2 3 31 31 H 1.09004 * 109.47458 * 59.99771 * 1 2 3 32 32 H 1.09002 * 109.47418 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47035 * 240.00339 * 2 1 3 34 34 H 1.08995 * 109.47288 * 120.00430 * 2 1 3 35 35 H 0.96995 * 120.00412 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99996 * 265.00440 * 13 3 2 37 37 H 0.97003 * 120.00052 * 355.49736 * 16 14 13 38 38 H 1.08007 * 119.96162 * 359.95829 * 18 17 16 39 39 H 1.08001 * 119.79765 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.83795 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.03934 * 179.97438 * 21 20 19 42 42 H 0.96996 * 119.99348 * 0.02562 * 25 23 22 43 43 H 1.08997 * 109.47200 * 60.00248 * 27 26 25 44 44 H 1.09001 * 109.47133 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.47203 * 299.99864 * 27 26 25 46 46 H 1.09000 * 109.46923 * 59.99969 * 28 26 25 47 47 H 1.09004 * 109.47523 * 179.97438 * 28 26 25 48 48 H 1.09004 * 109.47010 * 300.00405 * 28 26 25 49 49 H 1.09004 * 109.47196 * 59.99799 * 29 26 25 50 50 H 1.08992 * 109.47552 * 179.97438 * 29 26 25 51 51 H 1.08998 * 109.46997 * 300.00349 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8849 -0.6545 7 6 4.1433 0.8783 1.2279 8 7 3.4060 0.3417 2.1757 9 14 6.0052 0.8737 1.3777 10 1 6.5056 2.2718 1.3739 11 1 6.3980 0.2114 2.6475 12 1 6.5923 0.1347 0.2313 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3412 2.6327 -0.4318 16 7 0.0784 3.2666 -2.5187 17 6 -1.2113 3.7699 -2.6710 18 6 -1.8742 4.3303 -1.5872 19 6 -3.1519 4.8288 -1.7405 20 6 -3.7824 4.7754 -2.9733 21 6 -3.1401 4.2229 -4.0599 22 6 -1.8444 3.7193 -3.9217 23 6 -1.1486 3.1327 -5.0824 24 8 -0.0633 2.6040 -4.9371 25 7 -1.7158 3.1824 -6.3040 26 6 -1.0250 2.5993 -7.4567 27 6 -0.8001 1.1054 -7.2143 28 6 -1.8779 2.7898 -8.7125 29 6 0.3249 3.2938 -7.6474 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8290 -0.0561 2.9526 36 1 2.2720 2.1232 -1.9978 37 1 0.7199 3.3497 -3.2415 38 1 -1.3894 4.3758 -0.6231 39 1 -3.6635 5.2634 -0.8944 40 1 -4.7826 5.1679 -3.0827 41 1 -3.6361 4.1833 -5.0185 42 1 -2.5814 3.6044 -6.4199 43 1 -1.7617 0.6105 -7.0785 44 1 -0.2856 0.6715 -8.0717 45 1 -0.1921 0.9699 -6.3197 46 1 -2.0377 3.8542 -8.8850 47 1 -1.3636 2.3563 -9.5703 48 1 -2.8397 2.2953 -8.5769 49 1 0.9328 3.1584 -6.7528 50 1 0.8391 2.8597 -8.5047 51 1 0.1647 4.3581 -7.8200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097377732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:45 Heat of formation + Delta-G solvation = -40.999270 kcal Electronic energy + Delta-G solvation = -31650.462029 eV Core-core repulsion = 27549.837388 eV Total energy + Delta-G solvation = -4100.624642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.87795 -39.66816 -38.28164 -36.58833 -35.40421 -34.04797 -32.75558 -32.34687 -30.91081 -30.45917 -29.12996 -27.67368 -27.42098 -26.77989 -24.09248 -23.32032 -22.56765 -21.15665 -20.55880 -19.68623 -19.41132 -18.06986 -18.00237 -17.13176 -16.13536 -15.95266 -15.47844 -15.17241 -15.01599 -14.94666 -14.40409 -14.35824 -14.27862 -13.86572 -13.77140 -13.59310 -13.12571 -12.81657 -12.69721 -12.60126 -12.32778 -12.30438 -12.11546 -11.94353 -11.80744 -11.52414 -11.46025 -11.36607 -11.23827 -11.20176 -10.94367 -10.79218 -10.28370 -10.17728 -10.10342 -9.66257 -9.51893 -9.29485 -9.26821 -8.99908 -8.87698 -8.45914 -8.01597 -7.64431 -6.08563 -4.17453 0.86775 1.43205 2.86653 2.96209 3.27972 3.29438 3.33689 3.37840 3.72590 4.10706 4.36109 4.40840 4.65318 4.69460 4.75415 4.80625 5.01852 5.04003 5.22158 5.22981 5.30185 5.35243 5.48236 5.51561 5.54742 5.57382 5.64947 5.74238 5.76366 5.89757 6.10150 6.20203 6.23141 6.34408 6.43975 6.47289 6.52250 6.55643 6.68709 6.75075 7.09776 7.15764 7.23052 7.35989 7.44493 7.46330 7.53827 7.69335 7.92459 8.04879 8.16144 8.23407 8.79250 8.91411 9.31788 9.51185 10.96875 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.003024 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.783960 B = 9257.690506 C =10777.361357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.693 3.307 15 O -0.580 6.580 16 N -0.681 5.681 17 C 0.250 3.750 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.160 4.160 21 C -0.069 4.069 22 C -0.191 4.191 23 C 0.570 3.430 24 O -0.533 6.533 25 N -0.722 5.722 26 C 0.170 3.830 27 C -0.165 4.165 28 C -0.155 4.155 29 C -0.164 4.164 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.020 0.980 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.387 0.613 37 H 0.414 0.586 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.397 0.603 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.062 0.938 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 8.235 -19.853 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.365 5.365 14 C 0.394 3.606 15 O -0.459 6.459 16 N -0.330 5.330 17 C 0.149 3.851 18 C -0.155 4.155 19 C -0.091 4.091 20 C -0.179 4.179 21 C -0.088 4.088 22 C -0.197 4.197 23 C 0.359 3.641 24 O -0.411 6.411 25 N -0.375 5.375 26 C 0.084 3.916 27 C -0.223 4.223 28 C -0.213 4.213 29 C -0.222 4.222 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.255 0.745 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.232 0.768 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.482 7.609 -18.673 24.256 hybrid contribution 1.001 0.117 -0.744 1.253 sum -12.480 7.726 -19.417 24.341 Atomic orbital electron populations 1.21806 0.98291 0.97841 1.01259 1.21946 0.92701 0.99889 1.02156 1.18712 0.93947 0.88903 0.79920 0.93186 1.21206 0.90699 1.39154 1.06157 0.92139 1.24868 0.98570 0.94811 0.95376 1.69892 1.35169 1.37708 1.09217 0.86508 0.84893 0.78284 0.77403 1.20213 1.21156 1.20175 1.45819 1.13284 1.58134 1.19257 1.16108 0.83707 0.78727 0.82047 1.90866 1.51831 1.64999 1.38175 1.43047 1.11834 1.59486 1.18681 1.17506 0.84807 0.90503 0.92264 1.21519 0.95945 0.98099 0.99976 1.21251 0.94249 0.96409 0.97194 1.20930 1.00527 1.03428 0.93003 1.20943 0.92675 0.96469 0.98712 1.19650 0.96209 1.10042 0.93827 1.18115 0.85023 0.78456 0.82513 1.90620 1.21175 1.44609 1.84702 1.46040 1.23448 1.60710 1.07309 1.20327 0.92692 0.93763 0.84786 1.22242 1.02426 0.93912 1.03741 1.22091 1.00032 1.02341 0.96791 1.22232 0.96662 0.99815 1.03504 0.93166 0.94270 0.96089 0.95096 0.88329 0.92531 0.78031 0.74545 0.83072 0.85520 0.85840 0.86056 0.76758 0.92814 0.91964 0.89947 0.91996 0.90812 0.91983 0.90050 0.91940 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.23 5.45 -26.73 -0.15 -3.37 16 3 C 0.29 7.39 2.24 -69.08 -0.15 7.23 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.95 11.31 55.43 0.63 -24.33 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -15.65 5.03 -59.81 -0.30 -15.95 16 14 C 0.69 14.64 6.97 -86.92 -0.61 14.03 16 15 O -0.58 -13.64 10.91 5.29 0.06 -13.58 16 16 N -0.68 -11.91 4.57 -14.05 -0.06 -11.98 16 17 C 0.25 3.98 6.30 -83.49 -0.53 3.46 16 18 C -0.13 -2.08 8.68 -39.44 -0.34 -2.42 16 19 C -0.07 -0.85 10.03 -39.54 -0.40 -1.25 16 20 C -0.16 -1.58 10.02 -39.62 -0.40 -1.98 16 21 C -0.07 -0.69 9.52 -39.20 -0.37 -1.06 16 22 C -0.19 -2.50 5.89 -104.81 -0.62 -3.11 16 23 C 0.57 7.27 7.16 -12.48 -0.09 7.18 16 24 O -0.53 -8.18 10.18 5.29 0.05 -8.13 16 25 N -0.72 -6.61 5.05 -48.65 -0.25 -6.85 16 26 C 0.17 1.46 1.06 -131.82 -0.14 1.32 16 27 C -0.17 -1.66 8.40 37.16 0.31 -1.34 16 28 C -0.15 -0.88 8.59 37.16 0.32 -0.56 16 29 C -0.16 -1.52 8.40 37.16 0.31 -1.21 16 30 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 31 H 0.04 0.92 5.65 -51.93 -0.29 0.63 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.71 5.96 -51.93 -0.31 2.40 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.39 7.69 8.56 -40.82 -0.35 7.34 16 37 H 0.41 6.78 6.57 -40.82 -0.27 6.52 16 38 H 0.15 2.68 6.23 -52.48 -0.33 2.35 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.78 6.44 -52.49 -0.34 0.44 16 42 H 0.40 2.60 6.53 -40.82 -0.27 2.33 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.97 6.16 -51.93 -0.32 0.65 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -31.35 398.27 -9.60 -40.95 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -7.78 Total: 16.84 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.92 Total: 1.15 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.02 Total: -59.11 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.11 Total: -21.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.35 -9.60 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.052 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds