Wall clock time and date at job start Tue Mar 31 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 H 1.08998 * 109.47434 * 55.00487 * 3 2 1 5 5 C 1.50706 * 109.47019 * 175.00001 * 3 2 1 6 6 H 1.08006 * 119.99770 * 119.72716 * 5 3 2 7 7 C 1.37876 * 120.00122 * 300.00125 * 5 3 2 8 8 N 1.31519 * 119.99994 * 359.72545 * 7 5 3 9 9 Si 1.86796 * 119.99968 * 179.72467 * 7 5 3 10 10 H 1.48499 * 109.47234 * 60.00190 * 9 7 5 11 11 H 1.48501 * 109.46757 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47467 * 299.99832 * 9 7 5 13 13 N 1.46500 * 109.47458 * 294.99978 * 3 2 1 14 14 C 1.34776 * 120.00012 * 85.00013 * 13 3 2 15 15 O 1.21582 * 120.00062 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00256 * 180.02562 * 14 13 3 17 17 C 1.39274 * 120.00242 * 175.50544 * 16 14 13 18 18 C 1.38853 * 120.16701 * 35.22703 * 17 16 14 19 19 C 1.38009 * 120.07228 * 179.97438 * 18 17 16 20 20 C 1.38568 * 120.40758 * 359.97438 * 19 18 17 21 21 C 1.37790 * 120.33078 * 0.02627 * 20 19 18 22 22 C 1.39695 * 119.92192 * 359.69881 * 21 20 19 23 23 C 1.47504 * 120.20356 * 180.30229 * 22 21 20 24 24 O 1.21592 * 119.99941 * 185.60241 * 23 22 21 25 25 N 1.34780 * 120.00099 * 5.59536 * 23 22 21 26 26 C 1.46490 * 120.00278 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.46949 * 60.00288 * 26 25 23 28 28 C 1.52996 * 109.47523 * 180.02562 * 26 25 23 29 29 C 1.53002 * 109.47504 * 300.00527 * 26 25 23 30 30 H 1.08999 * 109.47448 * 299.99907 * 1 2 3 31 31 H 1.09004 * 109.47458 * 59.99771 * 1 2 3 32 32 H 1.09002 * 109.47418 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47035 * 240.00339 * 2 1 3 34 34 H 1.08995 * 109.47288 * 120.00430 * 2 1 3 35 35 H 0.96995 * 120.00412 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99996 * 265.00440 * 13 3 2 37 37 H 0.97003 * 120.00052 * 355.49736 * 16 14 13 38 38 H 1.08007 * 119.96162 * 359.95829 * 18 17 16 39 39 H 1.08001 * 119.79765 * 179.97438 * 19 18 17 40 40 H 1.08007 * 119.83795 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.03934 * 179.97438 * 21 20 19 42 42 H 0.96996 * 119.99348 * 0.02562 * 25 23 22 43 43 H 1.08997 * 109.47200 * 60.00248 * 27 26 25 44 44 H 1.09001 * 109.47133 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.47203 * 299.99864 * 27 26 25 46 46 H 1.09000 * 109.46923 * 59.99969 * 28 26 25 47 47 H 1.09004 * 109.47523 * 179.97438 * 28 26 25 48 48 H 1.09004 * 109.47010 * 300.00405 * 28 26 25 49 49 H 1.09004 * 109.47196 * 59.99799 * 29 26 25 50 50 H 1.08992 * 109.47552 * 179.97438 * 29 26 25 51 51 H 1.08998 * 109.46997 * 300.00349 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8849 -0.6545 7 6 4.1433 0.8783 1.2279 8 7 3.4060 0.3417 2.1757 9 14 6.0052 0.8737 1.3777 10 1 6.5056 2.2718 1.3739 11 1 6.3980 0.2114 2.6475 12 1 6.5923 0.1347 0.2313 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3412 2.6327 -0.4318 16 7 0.0784 3.2666 -2.5187 17 6 -1.2113 3.7699 -2.6710 18 6 -1.8742 4.3303 -1.5872 19 6 -3.1519 4.8288 -1.7405 20 6 -3.7824 4.7754 -2.9733 21 6 -3.1401 4.2229 -4.0599 22 6 -1.8444 3.7193 -3.9217 23 6 -1.1486 3.1327 -5.0824 24 8 -0.0633 2.6040 -4.9371 25 7 -1.7158 3.1824 -6.3040 26 6 -1.0250 2.5993 -7.4567 27 6 -0.8001 1.1054 -7.2143 28 6 -1.8779 2.7898 -8.7125 29 6 0.3249 3.2938 -7.6474 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8290 -0.0561 2.9526 36 1 2.2720 2.1232 -1.9978 37 1 0.7199 3.3497 -3.2415 38 1 -1.3894 4.3758 -0.6231 39 1 -3.6635 5.2634 -0.8944 40 1 -4.7826 5.1679 -3.0827 41 1 -3.6361 4.1833 -5.0185 42 1 -2.5814 3.6044 -6.4199 43 1 -1.7617 0.6105 -7.0785 44 1 -0.2856 0.6715 -8.0717 45 1 -0.1921 0.9699 -6.3197 46 1 -2.0377 3.8542 -8.8850 47 1 -1.3636 2.3563 -9.5703 48 1 -2.8397 2.2953 -8.5769 49 1 0.9328 3.1584 -6.7528 50 1 0.8391 2.8597 -8.5047 51 1 0.1647 4.3581 -7.8200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097377732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:44 Heat of formation + Delta-G solvation = -61.627320 kcal Electronic energy + Delta-G solvation = -31651.356529 eV Core-core repulsion = 27549.837388 eV Total energy + Delta-G solvation = -4101.519141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.01940 -40.95634 -39.43686 -37.46966 -37.17609 -35.54237 -34.33557 -33.63620 -32.79066 -31.35898 -30.41160 -28.73692 -28.22146 -28.18074 -25.26721 -24.93521 -23.98007 -22.28891 -21.91619 -21.34758 -20.53993 -19.67036 -19.05056 -18.37983 -17.82177 -17.06734 -16.91707 -16.61604 -16.23280 -16.07842 -15.89122 -15.58537 -15.17417 -15.08196 -14.92713 -14.56785 -14.53337 -14.39508 -14.18760 -13.62652 -13.47107 -13.27428 -13.20078 -13.00511 -12.98029 -12.92151 -12.87377 -12.67225 -12.51820 -12.48038 -12.17553 -12.09499 -12.08676 -11.95121 -11.65898 -11.36333 -11.10496 -10.97165 -10.54946 -10.52567 -10.17154 -9.85262 -9.73241 -9.00415 -8.17244 -6.34475 -0.12229 0.42700 1.43328 1.45754 1.53373 1.80998 1.92569 2.15520 2.24274 2.42150 2.95306 3.11740 3.45179 3.66645 3.86039 3.98039 4.02411 4.15253 4.17622 4.44229 4.45711 4.47503 4.53812 4.55591 4.71681 4.72751 4.74407 4.81356 4.88464 4.94239 4.98372 5.03007 5.03916 5.15775 5.24176 5.25676 5.34228 5.41031 5.41774 5.42464 5.50345 5.55788 5.58164 5.62016 5.65752 5.73228 5.84863 6.05316 6.14175 6.27722 6.61989 6.72272 7.18942 7.28338 7.33585 7.69372 8.88333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.003024 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.783960 B = 9257.690506 C =10777.361357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H 0.003 0.997 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.609 6.609 16 N -0.671 5.671 17 C 0.208 3.792 18 C -0.162 4.162 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.193 4.193 23 C 0.563 3.437 24 O -0.566 6.566 25 N -0.704 5.704 26 C 0.167 3.833 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.163 4.163 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.266 0.734 36 H 0.397 0.603 37 H 0.417 0.583 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.413 0.587 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.047 0.953 50 H 0.074 0.926 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 9.166 -23.175 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.195 3.805 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.191 1.191 13 N -0.368 5.368 14 C 0.394 3.606 15 O -0.490 6.490 16 N -0.321 5.321 17 C 0.109 3.891 18 C -0.183 4.183 19 C -0.090 4.090 20 C -0.161 4.161 21 C -0.075 4.075 22 C -0.199 4.199 23 C 0.352 3.648 24 O -0.446 6.446 25 N -0.357 5.357 26 C 0.082 3.918 27 C -0.222 4.222 28 C -0.205 4.205 29 C -0.221 4.221 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.258 0.742 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.185 0.815 42 H 0.251 0.749 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.563 8.584 -22.074 28.340 hybrid contribution 1.471 -0.098 0.213 1.490 sum -14.092 8.486 -21.861 27.359 Atomic orbital electron populations 1.21613 0.97044 0.98825 1.00032 1.21795 0.93693 0.99350 1.01061 1.18282 0.93508 0.88735 0.79993 0.97866 1.21523 0.91304 1.39439 1.06712 0.91417 1.25750 1.03419 0.94213 0.94866 1.70036 1.37149 1.38237 1.09683 0.85407 0.78920 0.78462 0.77594 1.19663 1.20824 1.19131 1.45513 1.14147 1.58655 1.18466 1.16182 0.83025 0.78642 0.82775 1.90841 1.52544 1.66065 1.39531 1.42768 1.13048 1.59140 1.17190 1.17837 0.84456 0.92789 0.94009 1.21362 0.97834 1.00500 0.98586 1.21551 0.92737 0.95461 0.99279 1.21436 1.01859 1.01273 0.91497 1.21477 0.90998 0.94151 1.00845 1.19853 0.97455 1.09966 0.92668 1.18218 0.84758 0.78334 0.83499 1.90616 1.22692 1.46043 1.85275 1.45917 1.23793 1.59709 1.06245 1.20460 0.93100 0.92503 0.85771 1.22212 1.01991 0.95414 1.02568 1.22047 0.99853 1.03594 0.94981 1.22200 0.96816 1.00602 1.02436 0.95102 0.94698 0.93806 0.94713 0.90568 0.92451 0.76936 0.74181 0.86706 0.83439 0.81415 0.81485 0.74870 0.92475 0.90585 0.93707 0.90566 0.89853 0.90867 0.93340 0.90667 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.51 71.98 0.61 -5.16 16 2 C -0.12 -6.32 5.45 30.59 0.17 -6.16 16 3 C 0.30 16.25 2.24 44.25 0.10 16.35 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 5 C -0.55 -30.63 8.73 25.60 0.22 -30.41 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -53.39 11.31 21.45 0.24 -53.15 16 9 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.72 -33.37 5.03 -461.42 -2.32 -35.69 16 14 C 0.69 31.36 6.97 179.06 1.25 32.61 16 15 O -0.61 -30.90 10.91 -3.97 -0.04 -30.94 16 16 N -0.67 -25.08 4.57 -316.63 -1.45 -26.53 16 17 C 0.21 6.85 6.30 38.60 0.24 7.10 16 18 C -0.16 -5.22 8.68 22.36 0.19 -5.03 16 19 C -0.07 -1.59 10.03 22.29 0.22 -1.37 16 20 C -0.14 -2.21 10.02 22.24 0.22 -1.99 16 21 C -0.06 -0.90 9.52 22.52 0.21 -0.68 16 22 C -0.19 -4.84 5.89 -19.99 -0.12 -4.96 16 23 C 0.56 13.94 7.16 86.69 0.62 14.57 16 24 O -0.57 -17.97 10.18 -4.00 -0.04 -18.01 16 25 N -0.70 -11.10 5.05 -426.09 -2.15 -13.25 16 26 C 0.17 2.50 1.06 3.61 0.00 2.50 16 27 C -0.16 -3.11 8.40 71.98 0.60 -2.51 16 28 C -0.15 -1.09 8.59 71.98 0.62 -0.47 16 29 C -0.16 -2.81 8.40 71.98 0.60 -2.21 16 30 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 31 H 0.03 1.71 5.65 -2.39 -0.01 1.70 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 4.38 5.96 -2.39 -0.01 4.37 16 35 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.40 16.68 8.56 -92.71 -0.79 15.89 16 37 H 0.42 14.67 6.57 -92.71 -0.61 14.06 16 38 H 0.11 4.49 6.23 -2.91 -0.02 4.48 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.17 1.12 6.44 -2.91 -0.02 1.10 16 42 H 0.41 3.61 6.53 -92.71 -0.61 3.00 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.04 1.21 6.16 -2.38 -0.01 1.20 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.08 0.51 8.14 -2.38 -0.02 0.50 16 48 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 49 H 0.05 1.18 6.16 -2.38 -0.01 1.17 16 50 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 51 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.51 398.27 1.46 -73.04 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -1.03 Total: 45.47 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.23 Total: 13.61 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.68 Total: -128.62 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -0.08 Total: -48.95 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.51 1.46 -73.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.416 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds