Wall clock time and date at job start Tue Mar 31 2020 04:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09001 * 109.46593 * 304.99968 * 3 2 1 5 5 C 1.50703 * 109.46834 * 185.00088 * 3 2 1 6 6 H 1.07998 * 119.99870 * 239.99232 * 5 3 2 7 7 C 1.37876 * 120.00034 * 60.00075 * 5 3 2 8 8 N 1.31517 * 120.00349 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47057 * 89.99722 * 9 7 5 11 11 H 1.48500 * 109.46888 * 209.99906 * 9 7 5 12 12 H 1.48493 * 109.47019 * 329.99838 * 9 7 5 13 13 N 1.46491 * 109.47161 * 65.00369 * 3 2 1 14 14 C 1.34778 * 119.99705 * 274.99769 * 13 3 2 15 15 O 1.21580 * 120.00396 * 0.02562 * 14 13 3 16 16 N 1.34782 * 120.00143 * 179.97438 * 14 13 3 17 17 C 1.39281 * 120.00033 * 184.47724 * 16 14 13 18 18 C 1.38846 * 120.16732 * 324.65376 * 17 16 14 19 19 C 1.38013 * 120.06960 * 180.02562 * 18 17 16 20 20 C 1.38566 * 120.40977 * 359.95921 * 19 18 17 21 21 C 1.37788 * 120.32818 * 359.97438 * 20 19 18 22 22 C 1.39701 * 119.92409 * 0.02562 * 21 20 19 23 23 C 1.47501 * 120.20111 * 179.97438 * 22 21 20 24 24 O 1.21596 * 119.99916 * 184.96878 * 23 22 21 25 25 N 1.34773 * 120.00271 * 4.96904 * 23 22 21 26 26 C 1.46501 * 120.00180 * 180.02562 * 25 23 22 27 27 C 1.52993 * 109.47334 * 59.99823 * 26 25 23 28 28 C 1.53001 * 109.46831 * 179.97438 * 26 25 23 29 29 C 1.53000 * 109.46663 * 299.99745 * 26 25 23 30 30 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46958 * 299.99991 * 1 2 3 32 32 H 1.08995 * 109.47469 * 59.99855 * 1 2 3 33 33 H 1.08998 * 109.47286 * 239.99601 * 2 1 3 34 34 H 1.09005 * 109.47563 * 120.00122 * 2 1 3 35 35 H 0.96993 * 120.00623 * 179.97438 * 8 7 5 36 36 H 0.97003 * 120.00332 * 95.00116 * 13 3 2 37 37 H 0.96998 * 119.99940 * 4.48831 * 16 14 13 38 38 H 1.08000 * 119.96507 * 0.02562 * 18 17 16 39 39 H 1.08010 * 119.79428 * 179.97438 * 19 18 17 40 40 H 1.07991 * 119.83891 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.04002 * 179.75112 * 21 20 19 42 42 H 0.97000 * 119.99859 * 359.97438 * 25 23 22 43 43 H 1.09000 * 109.46914 * 60.00012 * 27 26 25 44 44 H 1.09003 * 109.47228 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.47446 * 300.00279 * 27 26 25 46 46 H 1.09007 * 109.47287 * 60.00099 * 28 26 25 47 47 H 1.09003 * 109.46482 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47474 * 299.99417 * 28 26 25 49 49 H 1.09004 * 109.47346 * 60.00180 * 29 26 25 50 50 H 1.09003 * 109.47073 * 180.02562 * 29 26 25 51 51 H 1.08998 * 109.47283 * 299.99999 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9223 -2.8174 12 1 6.5569 2.0737 -0.6903 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3415 2.6319 0.4321 16 7 0.0784 3.2665 2.5188 17 6 -1.2112 3.7701 2.6709 18 6 -1.8728 4.3330 1.5878 19 6 -3.1505 4.8318 1.7410 20 6 -3.7827 4.7748 2.9727 21 6 -3.1422 4.2186 4.0585 22 6 -1.8487 3.7095 3.9190 23 6 -1.1571 3.1132 5.0773 24 8 0.0000 2.7536 4.9755 25 7 -1.8076 2.9670 6.2486 26 6 -1.1204 2.3753 7.3992 27 6 0.0994 3.2262 7.7577 28 6 -2.0757 2.3256 8.5934 29 6 -0.6674 0.9566 7.0484 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.8292 -0.0612 -2.9499 36 1 2.2720 2.1232 1.9977 37 1 0.7198 3.3493 3.2417 38 1 -1.3871 4.3805 0.6243 39 1 -3.6609 5.2691 0.8955 40 1 -4.7827 5.1675 3.0821 41 1 -3.6377 4.1802 5.0173 42 1 -2.7305 3.2542 6.3299 43 1 -0.2234 4.2369 8.0076 44 1 0.6104 2.7862 8.6141 45 1 0.7801 3.2621 6.9071 46 1 -2.9451 1.7195 8.3382 47 1 -1.5645 1.8849 9.4493 48 1 -2.3981 3.3364 8.8432 49 1 0.0132 0.9925 6.1977 50 1 -0.1566 0.5162 7.9046 51 1 -1.5365 0.3504 6.7930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097377733.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:49 Heat of formation + Delta-G solvation = -41.197291 kcal Electronic energy + Delta-G solvation = -31662.797710 eV Core-core repulsion = 27562.164482 eV Total energy + Delta-G solvation = -4100.633229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88273 -39.66926 -38.28401 -36.59777 -35.40662 -34.04524 -32.75958 -32.35082 -30.91575 -30.46118 -29.13219 -27.67121 -27.41766 -26.78472 -24.09254 -23.32141 -22.57119 -21.16668 -20.57059 -19.69011 -19.41106 -18.04762 -18.00135 -17.13129 -16.13947 -15.95108 -15.49112 -15.23510 -15.03491 -14.90209 -14.40378 -14.34466 -14.29664 -13.86297 -13.77043 -13.60100 -13.13283 -12.78847 -12.70292 -12.60917 -12.33063 -12.30180 -12.11814 -11.95277 -11.80655 -11.53249 -11.46396 -11.36700 -11.23447 -11.20686 -10.94396 -10.79623 -10.27606 -10.16919 -10.10502 -9.68662 -9.53064 -9.30822 -9.25500 -8.99243 -8.87957 -8.46945 -8.02056 -7.64935 -6.08973 -4.17823 0.86535 1.43042 2.86468 2.96508 3.27023 3.28855 3.34262 3.38730 3.72479 4.10340 4.35917 4.40872 4.65587 4.69371 4.75256 4.80857 5.01934 5.03784 5.22336 5.22721 5.30151 5.35573 5.47975 5.51211 5.54921 5.57975 5.65637 5.74310 5.77091 5.89607 6.09914 6.20232 6.23297 6.34293 6.44243 6.46382 6.52089 6.54701 6.68615 6.74574 7.09291 7.15639 7.22732 7.35386 7.43861 7.46456 7.53586 7.69299 7.92048 8.04369 8.16506 8.23196 8.79186 8.91414 9.31550 9.50928 10.96413 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.003033 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.466354 B = 9228.152126 C =10726.895810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.580 6.580 16 N -0.683 5.683 17 C 0.251 3.749 18 C -0.134 4.134 19 C -0.072 4.072 20 C -0.159 4.159 21 C -0.069 4.069 22 C -0.191 4.191 23 C 0.572 3.428 24 O -0.535 6.535 25 N -0.722 5.722 26 C 0.169 3.831 27 C -0.164 4.164 28 C -0.155 4.155 29 C -0.165 4.165 30 H 0.020 0.980 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.388 0.612 37 H 0.416 0.584 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.397 0.603 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 7.457 19.680 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.459 6.459 16 N -0.334 5.334 17 C 0.149 3.851 18 C -0.155 4.155 19 C -0.091 4.091 20 C -0.179 4.179 21 C -0.088 4.088 22 C -0.197 4.197 23 C 0.361 3.639 24 O -0.414 6.414 25 N -0.374 5.374 26 C 0.084 3.916 27 C -0.222 4.222 28 C -0.213 4.213 29 C -0.223 4.223 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.258 0.742 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.233 0.767 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.793 6.956 18.542 24.134 hybrid contribution 0.970 0.044 0.700 1.197 sum -12.823 7.000 19.242 24.160 Atomic orbital electron populations 1.21805 0.98307 0.97827 1.01247 1.21953 0.92683 0.99889 1.02184 1.18719 0.93975 0.88902 0.79929 0.93192 1.21241 0.90704 1.38935 1.06254 0.92078 1.24871 0.98578 0.94833 0.95366 1.69896 1.35077 1.37654 1.09357 0.86449 0.84905 0.78442 0.77311 1.20569 1.21100 1.19876 1.45820 1.13282 1.58140 1.19267 1.16137 0.83720 0.78751 0.82103 1.90865 1.51805 1.64988 1.38226 1.43162 1.11977 1.59445 1.18788 1.17512 0.84783 0.90468 0.92305 1.21517 0.95944 0.98087 0.99961 1.21254 0.94241 0.96420 0.97193 1.20927 1.00513 1.03420 0.93002 1.20944 0.92577 0.96607 0.98679 1.19648 0.96132 1.09994 0.93974 1.18095 0.85971 0.77580 0.82247 1.90566 1.17144 1.50384 1.83299 1.46025 1.16207 1.64311 1.10895 1.20333 0.92708 0.93649 0.84885 1.22232 0.98064 0.99028 1.02865 1.22092 0.99381 1.02432 0.97360 1.22241 1.02280 0.94459 1.03350 0.96090 0.94312 0.93153 0.88282 0.95111 0.92589 0.78019 0.74180 0.83093 0.85517 0.85833 0.86054 0.76726 0.92845 0.91941 0.90047 0.91960 0.90804 0.92001 0.89936 0.91954 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.22 5.45 -26.73 -0.15 -3.37 16 3 C 0.29 7.37 2.24 -69.08 -0.15 7.21 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.71 -15.64 5.03 -59.81 -0.30 -15.95 16 14 C 0.69 14.61 6.97 -86.91 -0.61 14.00 16 15 O -0.58 -13.62 10.92 5.29 0.06 -13.56 16 16 N -0.68 -11.99 4.68 -14.05 -0.07 -12.06 16 17 C 0.25 4.00 6.30 -83.49 -0.53 3.47 16 18 C -0.13 -2.08 8.68 -39.44 -0.34 -2.42 16 19 C -0.07 -0.85 10.03 -39.54 -0.40 -1.25 16 20 C -0.16 -1.58 10.02 -39.62 -0.40 -1.97 16 21 C -0.07 -0.69 9.52 -39.20 -0.37 -1.06 16 22 C -0.19 -2.50 5.89 -104.81 -0.62 -3.12 16 23 C 0.57 7.32 7.17 -12.49 -0.09 7.23 16 24 O -0.54 -8.15 10.10 5.28 0.05 -8.10 16 25 N -0.72 -6.68 5.05 -48.65 -0.25 -6.92 16 26 C 0.17 1.47 1.06 -131.82 -0.14 1.33 16 27 C -0.16 -1.51 8.40 37.15 0.31 -1.20 16 28 C -0.16 -0.90 8.59 37.16 0.32 -0.58 16 29 C -0.17 -1.68 8.40 37.16 0.31 -1.37 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 32 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 33 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 36 H 0.39 7.70 8.56 -40.82 -0.35 7.35 16 37 H 0.42 6.90 6.35 -40.82 -0.26 6.64 16 38 H 0.15 2.67 6.24 -52.49 -0.33 2.35 16 39 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.78 6.44 -52.49 -0.34 0.44 16 42 H 0.40 2.65 6.53 -40.82 -0.27 2.38 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.97 6.16 -51.93 -0.32 0.65 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -31.23 398.08 -9.60 -40.83 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -7.78 Total: 17.00 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.92 Total: 1.18 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.01 Total: -59.22 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.11 Total: -21.66 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.23 -9.60 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377733.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.370 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds