Wall clock time and date at job start Tue Mar 31 2020 04:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09001 * 109.46593 * 304.99968 * 3 2 1 5 5 C 1.50703 * 109.46834 * 185.00088 * 3 2 1 6 6 H 1.07998 * 119.99870 * 239.99232 * 5 3 2 7 7 C 1.37876 * 120.00034 * 60.00075 * 5 3 2 8 8 N 1.31517 * 120.00349 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47057 * 89.99722 * 9 7 5 11 11 H 1.48500 * 109.46888 * 209.99906 * 9 7 5 12 12 H 1.48493 * 109.47019 * 329.99838 * 9 7 5 13 13 N 1.46491 * 109.47161 * 65.00369 * 3 2 1 14 14 C 1.34778 * 119.99705 * 274.99769 * 13 3 2 15 15 O 1.21580 * 120.00396 * 0.02562 * 14 13 3 16 16 N 1.34782 * 120.00143 * 179.97438 * 14 13 3 17 17 C 1.39281 * 120.00033 * 184.47724 * 16 14 13 18 18 C 1.38846 * 120.16732 * 324.65376 * 17 16 14 19 19 C 1.38013 * 120.06960 * 180.02562 * 18 17 16 20 20 C 1.38566 * 120.40977 * 359.95921 * 19 18 17 21 21 C 1.37788 * 120.32818 * 359.97438 * 20 19 18 22 22 C 1.39701 * 119.92409 * 0.02562 * 21 20 19 23 23 C 1.47501 * 120.20111 * 179.97438 * 22 21 20 24 24 O 1.21596 * 119.99916 * 184.96878 * 23 22 21 25 25 N 1.34773 * 120.00271 * 4.96904 * 23 22 21 26 26 C 1.46501 * 120.00180 * 180.02562 * 25 23 22 27 27 C 1.52993 * 109.47334 * 59.99823 * 26 25 23 28 28 C 1.53001 * 109.46831 * 179.97438 * 26 25 23 29 29 C 1.53000 * 109.46663 * 299.99745 * 26 25 23 30 30 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46958 * 299.99991 * 1 2 3 32 32 H 1.08995 * 109.47469 * 59.99855 * 1 2 3 33 33 H 1.08998 * 109.47286 * 239.99601 * 2 1 3 34 34 H 1.09005 * 109.47563 * 120.00122 * 2 1 3 35 35 H 0.96993 * 120.00623 * 179.97438 * 8 7 5 36 36 H 0.97003 * 120.00332 * 95.00116 * 13 3 2 37 37 H 0.96998 * 119.99940 * 4.48831 * 16 14 13 38 38 H 1.08000 * 119.96507 * 0.02562 * 18 17 16 39 39 H 1.08010 * 119.79428 * 179.97438 * 19 18 17 40 40 H 1.07991 * 119.83891 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.04002 * 179.75112 * 21 20 19 42 42 H 0.97000 * 119.99859 * 359.97438 * 25 23 22 43 43 H 1.09000 * 109.46914 * 60.00012 * 27 26 25 44 44 H 1.09003 * 109.47228 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.47446 * 300.00279 * 27 26 25 46 46 H 1.09007 * 109.47287 * 60.00099 * 28 26 25 47 47 H 1.09003 * 109.46482 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47474 * 299.99417 * 28 26 25 49 49 H 1.09004 * 109.47346 * 60.00180 * 29 26 25 50 50 H 1.09003 * 109.47073 * 180.02562 * 29 26 25 51 51 H 1.08998 * 109.47283 * 299.99999 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9223 -2.8174 12 1 6.5569 2.0737 -0.6903 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3415 2.6319 0.4321 16 7 0.0784 3.2665 2.5188 17 6 -1.2112 3.7701 2.6709 18 6 -1.8728 4.3330 1.5878 19 6 -3.1505 4.8318 1.7410 20 6 -3.7827 4.7748 2.9727 21 6 -3.1422 4.2186 4.0585 22 6 -1.8487 3.7095 3.9190 23 6 -1.1571 3.1132 5.0773 24 8 0.0000 2.7536 4.9755 25 7 -1.8076 2.9670 6.2486 26 6 -1.1204 2.3753 7.3992 27 6 0.0994 3.2262 7.7577 28 6 -2.0757 2.3256 8.5934 29 6 -0.6674 0.9566 7.0484 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.8292 -0.0612 -2.9499 36 1 2.2720 2.1232 1.9977 37 1 0.7198 3.3493 3.2417 38 1 -1.3871 4.3805 0.6243 39 1 -3.6609 5.2691 0.8955 40 1 -4.7827 5.1675 3.0821 41 1 -3.6377 4.1802 5.0173 42 1 -2.7305 3.2542 6.3299 43 1 -0.2234 4.2369 8.0076 44 1 0.6104 2.7862 8.6141 45 1 0.7801 3.2621 6.9071 46 1 -2.9451 1.7195 8.3382 47 1 -1.5645 1.8849 9.4493 48 1 -2.3981 3.3364 8.8432 49 1 0.0132 0.9925 6.1977 50 1 -0.1566 0.5162 7.9046 51 1 -1.5365 0.3504 6.7930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097377733.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:48 Heat of formation + Delta-G solvation = -61.721116 kcal Electronic energy + Delta-G solvation = -31663.687690 eV Core-core repulsion = 27562.164482 eV Total energy + Delta-G solvation = -4101.523208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02376 -40.95994 -39.43940 -37.48057 -37.17741 -35.53778 -34.33802 -33.64218 -32.79065 -31.36300 -30.41319 -28.73944 -28.22567 -28.18133 -25.27048 -24.93404 -23.97892 -22.28938 -21.93847 -21.34630 -20.54742 -19.65919 -19.03525 -18.38645 -17.82407 -17.06806 -16.92218 -16.63761 -16.24105 -16.04847 -15.95283 -15.57832 -15.17300 -15.07999 -14.93245 -14.57362 -14.53658 -14.40039 -14.17455 -13.61676 -13.47226 -13.28855 -13.20531 -13.00927 -12.97172 -12.92166 -12.88164 -12.68387 -12.51653 -12.48798 -12.16796 -12.09491 -12.09165 -11.95100 -11.66229 -11.35828 -11.09622 -10.97952 -10.55882 -10.52834 -10.17905 -9.85669 -9.73385 -9.01115 -8.17512 -6.34677 -0.12476 0.42492 1.43306 1.44093 1.54585 1.82839 1.90620 2.15158 2.23701 2.41825 2.95424 3.11470 3.45330 3.66080 3.86078 3.97636 4.02220 4.15000 4.17212 4.44071 4.45649 4.47425 4.53800 4.55481 4.71307 4.72543 4.74359 4.81207 4.88300 4.94089 4.98241 5.02749 5.03773 5.15650 5.24000 5.25446 5.34052 5.40672 5.41710 5.42490 5.50298 5.55721 5.58220 5.61448 5.65891 5.73274 5.84872 6.05255 6.14352 6.28437 6.61093 6.72299 7.18092 7.28291 7.33593 7.69227 8.88139 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.003033 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.466354 B = 9228.152126 C =10726.895810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.609 6.609 16 N -0.673 5.673 17 C 0.208 3.792 18 C -0.162 4.162 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.193 4.193 23 C 0.564 3.436 24 O -0.567 6.567 25 N -0.704 5.704 26 C 0.167 3.833 27 C -0.162 4.162 28 C -0.148 4.148 29 C -0.164 4.164 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.397 0.603 37 H 0.419 0.581 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.413 0.587 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.044 0.956 50 H 0.076 0.924 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 8.204 22.948 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.490 6.490 16 N -0.325 5.325 17 C 0.109 3.891 18 C -0.183 4.183 19 C -0.090 4.090 20 C -0.160 4.160 21 C -0.075 4.075 22 C -0.200 4.200 23 C 0.353 3.647 24 O -0.447 6.447 25 N -0.357 5.357 26 C 0.082 3.918 27 C -0.220 4.220 28 C -0.205 4.205 29 C -0.222 4.222 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.261 0.739 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.185 0.815 42 H 0.251 0.749 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.974 7.740 21.886 28.179 hybrid contribution 1.472 -0.116 -0.242 1.497 sum -14.501 7.624 21.644 27.145 Atomic orbital electron populations 1.21612 0.97030 0.98833 1.00034 1.21800 0.93704 0.99309 1.01100 1.18291 0.93517 0.88765 0.79989 0.97873 1.21545 0.91308 1.39230 1.06786 0.91455 1.25747 1.03398 0.94244 0.94864 1.70037 1.37060 1.38164 1.09828 0.85352 0.78961 0.78787 0.77267 1.19680 1.20874 1.19152 1.45517 1.14138 1.58662 1.18476 1.16210 0.83041 0.78662 0.82819 1.90840 1.52511 1.66043 1.39559 1.42895 1.13194 1.59123 1.17295 1.17845 0.84424 0.92768 0.94066 1.21360 0.97839 1.00490 0.98572 1.21555 0.92724 0.95464 0.99278 1.21434 1.01851 1.01257 0.91492 1.21480 0.90896 0.94274 1.00811 1.19854 0.97369 1.09958 0.92796 1.18208 0.85739 0.77581 0.83144 1.90561 1.18633 1.51678 1.83865 1.45911 1.16743 1.63120 1.09885 1.20465 0.93423 0.92303 0.85647 1.22194 0.97879 0.99915 1.01984 1.22050 0.98831 1.03770 0.95841 1.22217 1.01631 0.95927 1.02470 0.93779 0.94689 0.95115 0.90535 0.94694 0.92459 0.76942 0.73880 0.86726 0.83424 0.81396 0.81464 0.74868 0.91873 0.90652 0.93310 0.91017 0.89828 0.90437 0.93638 0.90533 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.31 5.45 30.60 0.17 -6.14 16 3 C 0.30 16.20 2.24 44.25 0.10 16.30 16 4 H 0.00 0.21 7.58 -2.39 -0.02 0.20 16 5 C -0.55 -30.56 8.73 25.60 0.22 -30.33 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.99 5.29 84.65 0.45 1.43 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.72 -33.36 5.03 -461.42 -2.32 -35.68 16 14 C 0.69 31.30 6.97 179.05 1.25 32.54 16 15 O -0.61 -30.82 10.92 -3.97 -0.04 -30.86 16 16 N -0.67 -25.26 4.68 -316.62 -1.48 -26.74 16 17 C 0.21 6.87 6.30 38.60 0.24 7.11 16 18 C -0.16 -5.22 8.68 22.36 0.19 -5.03 16 19 C -0.07 -1.59 10.03 22.29 0.22 -1.37 16 20 C -0.14 -2.21 10.02 22.24 0.22 -1.98 16 21 C -0.06 -0.89 9.52 22.52 0.21 -0.68 16 22 C -0.19 -4.86 5.89 -19.99 -0.12 -4.98 16 23 C 0.56 14.02 7.17 86.69 0.62 14.64 16 24 O -0.57 -17.86 10.10 -4.02 -0.04 -17.90 16 25 N -0.70 -11.26 5.05 -426.09 -2.15 -13.41 16 26 C 0.17 2.52 1.06 3.60 0.00 2.53 16 27 C -0.16 -2.76 8.40 71.98 0.60 -2.15 16 28 C -0.15 -1.12 8.59 71.98 0.62 -0.50 16 29 C -0.16 -3.20 8.40 71.98 0.60 -2.60 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.70 5.64 -2.39 -0.01 1.69 16 32 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 33 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 34 H 0.03 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.40 16.70 8.56 -92.71 -0.79 15.90 16 37 H 0.42 14.90 6.35 -92.71 -0.59 14.31 16 38 H 0.11 4.49 6.24 -2.91 -0.02 4.47 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.17 1.24 8.06 -2.92 -0.02 1.22 16 41 H 0.17 1.11 6.44 -2.91 -0.02 1.09 16 42 H 0.41 3.73 6.53 -92.71 -0.61 3.12 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.18 6.16 -2.38 -0.01 1.16 16 46 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.04 1.24 6.16 -2.38 -0.01 1.23 16 50 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -74.21 398.08 1.45 -72.76 By element: Atomic # 1 Polarization: 46.76 SS G_CDS: -1.01 Total: 45.75 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.23 Total: 13.66 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -5.71 Total: -128.86 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.08 Total: -48.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.21 1.45 -72.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377733.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.037 kcal (2) G-P(sol) polarization free energy of solvation -74.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds