Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29793 * 126.20675 * 2 1 4 4 N 1.39451 * 111.42752 * 179.86699 * 3 2 1 5 5 C 1.40049 * 124.94037 * 180.18180 * 4 3 2 6 6 C 1.38875 * 120.07267 * 179.97438 * 5 4 3 7 7 C 1.38110 * 119.93168 * 179.74588 * 6 5 4 8 8 C 1.38285 * 120.06650 * 0.55710 * 7 6 5 9 9 C 1.38280 * 120.14322 * 359.69329 * 8 7 6 10 10 C 1.38109 * 120.06960 * 0.02900 * 9 8 7 11 11 C 1.34848 * 110.11696 * 0.41172 * 4 3 2 12 12 O 1.21866 * 127.01215 * 179.73581 * 11 4 3 13 13 C 1.47029 * 126.20807 * 180.30838 * 2 1 3 14 14 C 1.38469 * 127.55379 * 359.97438 * 13 2 1 15 15 C 1.46164 * 119.99841 * 350.18772 * 14 13 2 16 16 C 1.40421 * 120.12839 * 314.78052 * 15 14 13 17 17 C 1.36483 * 119.86411 * 179.76224 * 16 15 14 18 18 C 1.39328 * 120.13294 * 0.51493 * 17 16 15 19 19 O 1.35469 * 119.86767 * 179.71719 * 18 17 16 20 20 C 1.34734 * 116.99708 * 174.46565 * 19 18 17 21 21 H 1.08001 * 119.99946 * 5.05151 * 20 19 18 22 22 C 1.38803 * 119.99859 * 185.05698 * 20 19 18 23 23 N 1.31457 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99740 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47541 * 60.00092 * 24 22 20 26 26 H 1.48506 * 109.46888 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47330 * 299.99426 * 24 22 20 28 28 C 1.39319 * 120.26045 * 359.73555 * 18 17 16 29 29 C 1.36482 * 120.13569 * 0.02562 * 28 18 17 30 30 H 1.08996 * 109.46836 * 268.11433 * 1 2 3 31 31 H 1.09001 * 109.46773 * 28.11442 * 1 2 3 32 32 H 1.08995 * 109.46746 * 148.11287 * 1 2 3 33 33 H 1.07999 * 120.03007 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.96234 * 180.24939 * 7 6 5 35 35 H 1.08004 * 119.92674 * 179.72418 * 8 7 6 36 36 H 1.08002 * 119.96817 * 180.02562 * 9 8 7 37 37 H 1.08006 * 120.03062 * 180.02562 * 10 9 8 38 38 H 1.07993 * 120.00476 * 170.19077 * 14 13 2 39 39 H 1.07996 * 120.06877 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.93843 * 180.25419 * 17 16 15 41 41 H 0.96997 * 119.99447 * 180.02562 * 23 22 20 42 42 H 1.08000 * 119.92992 * 180.02562 * 28 18 17 43 43 H 1.08003 * 120.07028 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2737 1.0473 0.0000 4 7 3.6221 0.6916 0.0030 5 6 4.6905 1.5970 0.0074 6 6 5.9984 1.1301 0.0107 7 6 7.0498 2.0256 0.0097 8 6 6.8013 3.3859 0.0171 9 6 5.5001 3.8541 0.0192 10 6 4.4443 2.9637 0.0144 11 6 3.7475 -0.6511 -0.0040 12 8 4.7847 -1.2909 -0.0082 13 6 2.3755 -1.1863 -0.0064 14 6 1.9883 -2.5158 -0.0130 15 6 0.5865 -2.8697 0.2014 16 6 -0.1456 -2.2570 1.2312 17 6 -1.4556 -2.5880 1.4235 18 6 -2.0637 -3.5395 0.6074 19 8 -3.3627 -3.8682 0.8067 20 6 -3.9250 -4.7076 -0.0847 21 1 -3.3224 -5.1504 -0.8640 22 6 -5.2786 -5.0032 -0.0015 23 7 -6.0119 -4.4645 0.9473 24 14 -6.0582 -6.1664 -1.2378 25 1 -5.3958 -7.4928 -1.1556 26 1 -7.5042 -6.3150 -0.9339 27 1 -5.8949 -5.6154 -2.6071 28 6 -1.3410 -4.1546 -0.4126 29 6 -0.0317 -3.8282 -0.6176 30 1 -0.3633 -0.0338 1.0271 31 1 -0.3633 0.9064 -0.4843 32 1 -0.3632 -0.8726 -0.5428 33 1 6.1930 0.0678 0.0094 34 1 8.0671 1.6630 0.0082 35 1 7.6252 4.0842 0.0209 36 1 5.3093 4.9171 0.0245 37 1 3.4283 3.3301 0.0155 38 1 2.7220 -3.2911 -0.1766 39 1 0.3258 -1.5223 1.8670 40 1 -2.0210 -2.1145 2.2126 41 1 -6.9577 -4.6714 1.0056 42 1 -1.8178 -4.8912 -1.0423 43 1 0.5274 -4.3054 -1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100201633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = 80.660031 kcal Electronic energy + Delta-G solvation = -28304.507718 eV Core-core repulsion = 24282.915782 eV Total energy + Delta-G solvation = -4021.591936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48030 -39.58423 -38.88057 -37.48738 -37.10524 -34.28320 -32.83208 -31.98448 -31.15674 -31.01188 -30.14751 -28.38016 -27.64614 -25.94909 -24.65303 -22.87150 -22.35564 -22.18418 -21.18984 -19.93913 -19.39677 -18.40596 -17.84105 -17.22195 -16.36400 -15.98834 -15.67205 -15.35086 -14.90878 -14.89382 -14.65058 -14.25019 -14.17909 -14.00973 -13.92733 -13.51631 -13.42520 -13.26243 -13.08108 -12.88016 -12.68855 -12.66172 -12.11976 -12.04120 -11.80344 -11.48744 -11.42554 -11.23001 -11.18190 -11.03823 -10.76332 -10.69170 -10.35301 -9.73903 -9.53340 -9.34379 -9.07036 -8.99386 -8.59164 -7.92935 -7.36546 -6.86912 -4.38710 0.21983 1.10598 1.28112 1.90938 1.99462 2.32792 2.53558 2.92219 2.93170 2.96969 3.10970 3.65695 3.79189 3.91907 4.19809 4.41059 4.72322 4.80424 4.83332 4.85293 4.94124 5.03493 5.08144 5.28503 5.31090 5.31737 5.37702 5.49725 5.63252 5.69305 5.74745 5.82823 5.86164 5.95624 5.99086 6.13685 6.19772 6.26661 6.28234 6.41275 6.43977 6.55222 6.58645 6.68198 6.88037 6.94575 6.97625 7.05014 7.40208 7.58088 7.66206 7.91610 8.56736 9.21497 10.28226 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.001929 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.775372 B =14511.606224 C =14976.300520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.165 3.835 3 N -0.272 5.272 4 N -0.413 5.413 5 C 0.184 3.816 6 C -0.156 4.156 7 C -0.095 4.095 8 C -0.147 4.147 9 C -0.099 4.099 10 C -0.136 4.136 11 C 0.530 3.470 12 O -0.511 6.511 13 C -0.303 4.303 14 C 0.149 3.851 15 C -0.236 4.236 16 C -0.020 4.020 17 C -0.205 4.205 18 C 0.173 3.827 19 O -0.149 6.149 20 C -0.392 4.392 21 H 0.101 0.899 22 C 0.044 3.956 23 N -0.840 5.840 24 Si 0.947 3.053 25 H -0.266 1.266 26 H -0.274 1.274 27 H -0.266 1.266 28 C -0.244 4.244 29 C -0.019 4.019 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.279 0.721 42 H 0.133 0.867 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.045 8.455 -2.501 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.020 4.020 3 N -0.080 5.080 4 N -0.219 5.219 5 C 0.091 3.909 6 C -0.177 4.177 7 C -0.113 4.113 8 C -0.166 4.166 9 C -0.117 4.117 10 C -0.157 4.157 11 C 0.324 3.676 12 O -0.389 6.389 13 C -0.309 4.309 14 C 0.126 3.874 15 C -0.238 4.238 16 C -0.038 4.038 17 C -0.224 4.224 18 C 0.114 3.886 19 O -0.048 6.048 20 C -0.466 4.466 21 H 0.118 0.882 22 C -0.165 4.165 23 N -0.471 5.471 24 Si 0.770 3.230 25 H -0.191 1.191 26 H -0.199 1.199 27 H -0.190 1.190 28 C -0.264 4.264 29 C -0.038 4.038 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.169 0.831 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.151 0.849 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.260 9.273 -2.229 17.155 hybrid contribution -0.275 -1.325 -0.589 1.476 sum 13.985 7.948 -2.817 16.331 Atomic orbital electron populations 1.20930 0.84743 1.04701 1.04540 1.24091 0.96824 0.88741 0.92361 1.76058 0.86626 1.24429 1.20920 1.46480 1.03455 1.05445 1.66549 1.17626 0.84982 0.88749 0.99587 1.21514 0.90131 1.02623 1.03432 1.20982 0.98539 0.92910 0.98910 1.21128 0.96817 0.95605 1.03042 1.20976 0.92198 0.99356 0.99215 1.20880 1.00474 0.90756 1.03574 1.18957 0.89912 0.81830 0.76859 1.90755 1.33462 1.64081 1.50554 1.21510 0.92958 0.94496 1.21957 1.22844 0.94920 0.92901 0.76689 1.18326 0.93246 1.07351 1.04840 1.20728 0.92645 0.95093 0.95352 1.19879 0.95186 1.02969 1.04407 1.19696 0.85271 0.91449 0.92171 1.83852 1.19165 1.55102 1.46633 1.21551 0.92932 1.22818 1.09342 0.88174 1.25483 0.95121 0.97944 0.97905 1.69972 1.07919 1.39318 1.29899 0.85672 0.78403 0.79496 0.79418 1.19067 1.19910 1.19029 1.20837 0.95404 1.06717 1.03408 1.20678 0.94243 0.92651 0.96181 0.88619 0.90440 0.88066 0.83074 0.85565 0.86027 0.85619 0.84813 0.84658 0.86249 0.85766 0.91128 0.84934 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 8.17 36.01 0.29 -0.79 16 2 C 0.16 2.34 7.00 -79.89 -0.56 1.78 16 3 N -0.27 -4.21 11.47 35.02 0.40 -3.81 16 4 N -0.41 -6.76 3.74 -10.78 -0.04 -6.80 16 5 C 0.18 2.78 6.67 -83.63 -0.56 2.22 16 6 C -0.16 -2.20 9.36 -39.39 -0.37 -2.56 16 7 C -0.09 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.15 -1.45 10.04 -39.55 -0.40 -1.85 16 9 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 10 C -0.14 -1.77 9.63 -39.39 -0.38 -2.15 16 11 C 0.53 8.97 8.05 -12.56 -0.10 8.86 16 12 O -0.51 -9.30 15.16 5.04 0.08 -9.22 16 13 C -0.30 -4.48 6.04 -102.58 -0.62 -5.10 16 14 C 0.15 1.96 9.87 -36.32 -0.36 1.60 16 15 C -0.24 -3.29 4.25 -105.08 -0.45 -3.74 16 16 C -0.02 -0.28 5.57 -39.39 -0.22 -0.50 16 17 C -0.21 -3.44 9.93 -39.81 -0.40 -3.84 16 18 C 0.17 3.42 6.66 -38.77 -0.26 3.16 16 19 O -0.15 -3.61 9.74 1.18 0.01 -3.60 16 20 C -0.39 -9.39 9.48 30.94 0.29 -9.10 16 21 H 0.10 2.17 5.18 -52.49 -0.27 1.90 16 22 C 0.04 1.05 5.50 -17.50 -0.10 0.95 16 23 N -0.84 -21.75 13.67 55.49 0.76 -20.99 16 24 Si 0.95 17.89 29.55 -169.99 -5.02 12.87 16 25 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 26 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 27 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 28 C -0.24 -4.27 9.10 -39.81 -0.36 -4.63 16 29 C -0.02 -0.27 9.76 -39.40 -0.38 -0.66 16 30 H 0.10 1.05 6.21 -51.93 -0.32 0.73 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.29 5.86 -51.93 -0.30 0.99 16 33 H 0.15 2.32 5.37 -52.49 -0.28 2.04 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.13 1.69 7.64 -52.48 -0.40 1.29 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.12 1.51 6.47 -52.49 -0.34 1.17 16 40 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.13 2.32 5.61 -52.49 -0.29 2.02 16 43 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -28.47 366.94 -8.31 -36.78 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.31 Total: 8.47 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -5.71 Total: -19.21 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 1.12 Total: -31.60 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.47 -8.31 -36.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100201633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.435 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds