Wall clock time and date at job start Tue Mar 31 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29793 * 126.20675 * 2 1 4 4 N 1.39451 * 111.42752 * 179.86699 * 3 2 1 5 5 C 1.40049 * 124.94037 * 180.18180 * 4 3 2 6 6 C 1.38875 * 120.07267 * 179.97438 * 5 4 3 7 7 C 1.38110 * 119.93168 * 179.74588 * 6 5 4 8 8 C 1.38285 * 120.06650 * 0.55710 * 7 6 5 9 9 C 1.38280 * 120.14322 * 359.69329 * 8 7 6 10 10 C 1.38109 * 120.06960 * 0.02900 * 9 8 7 11 11 C 1.34848 * 110.11696 * 0.41172 * 4 3 2 12 12 O 1.21866 * 127.01215 * 179.73581 * 11 4 3 13 13 C 1.47029 * 126.20807 * 180.30838 * 2 1 3 14 14 C 1.38469 * 127.55379 * 359.97438 * 13 2 1 15 15 C 1.46164 * 119.99841 * 350.18772 * 14 13 2 16 16 C 1.40421 * 120.12839 * 314.78052 * 15 14 13 17 17 C 1.36483 * 119.86411 * 179.76224 * 16 15 14 18 18 C 1.39328 * 120.13294 * 0.51493 * 17 16 15 19 19 O 1.35469 * 119.86767 * 179.71719 * 18 17 16 20 20 C 1.34734 * 116.99708 * 174.46565 * 19 18 17 21 21 H 1.08001 * 119.99946 * 5.05151 * 20 19 18 22 22 C 1.38803 * 119.99859 * 185.05698 * 20 19 18 23 23 N 1.31457 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99740 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47541 * 60.00092 * 24 22 20 26 26 H 1.48506 * 109.46888 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47330 * 299.99426 * 24 22 20 28 28 C 1.39319 * 120.26045 * 359.73555 * 18 17 16 29 29 C 1.36482 * 120.13569 * 0.02562 * 28 18 17 30 30 H 1.08996 * 109.46836 * 268.11433 * 1 2 3 31 31 H 1.09001 * 109.46773 * 28.11442 * 1 2 3 32 32 H 1.08995 * 109.46746 * 148.11287 * 1 2 3 33 33 H 1.07999 * 120.03007 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.96234 * 180.24939 * 7 6 5 35 35 H 1.08004 * 119.92674 * 179.72418 * 8 7 6 36 36 H 1.08002 * 119.96817 * 180.02562 * 9 8 7 37 37 H 1.08006 * 120.03062 * 180.02562 * 10 9 8 38 38 H 1.07993 * 120.00476 * 170.19077 * 14 13 2 39 39 H 1.07996 * 120.06877 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.93843 * 180.25419 * 17 16 15 41 41 H 0.96997 * 119.99447 * 180.02562 * 23 22 20 42 42 H 1.08000 * 119.92992 * 180.02562 * 28 18 17 43 43 H 1.08003 * 120.07028 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2737 1.0473 0.0000 4 7 3.6221 0.6916 0.0030 5 6 4.6905 1.5970 0.0074 6 6 5.9984 1.1301 0.0107 7 6 7.0498 2.0256 0.0097 8 6 6.8013 3.3859 0.0171 9 6 5.5001 3.8541 0.0192 10 6 4.4443 2.9637 0.0144 11 6 3.7475 -0.6511 -0.0040 12 8 4.7847 -1.2909 -0.0082 13 6 2.3755 -1.1863 -0.0064 14 6 1.9883 -2.5158 -0.0130 15 6 0.5865 -2.8697 0.2014 16 6 -0.1456 -2.2570 1.2312 17 6 -1.4556 -2.5880 1.4235 18 6 -2.0637 -3.5395 0.6074 19 8 -3.3627 -3.8682 0.8067 20 6 -3.9250 -4.7076 -0.0847 21 1 -3.3224 -5.1504 -0.8640 22 6 -5.2786 -5.0032 -0.0015 23 7 -6.0119 -4.4645 0.9473 24 14 -6.0582 -6.1664 -1.2378 25 1 -5.3958 -7.4928 -1.1556 26 1 -7.5042 -6.3150 -0.9339 27 1 -5.8949 -5.6154 -2.6071 28 6 -1.3410 -4.1546 -0.4126 29 6 -0.0317 -3.8282 -0.6176 30 1 -0.3633 -0.0338 1.0271 31 1 -0.3633 0.9064 -0.4843 32 1 -0.3632 -0.8726 -0.5428 33 1 6.1930 0.0678 0.0094 34 1 8.0671 1.6630 0.0082 35 1 7.6252 4.0842 0.0209 36 1 5.3093 4.9171 0.0245 37 1 3.4283 3.3301 0.0155 38 1 2.7220 -3.2911 -0.1766 39 1 0.3258 -1.5223 1.8670 40 1 -2.0210 -2.1145 2.2126 41 1 -6.9577 -4.6714 1.0056 42 1 -1.8178 -4.8912 -1.0423 43 1 0.5274 -4.3054 -1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100201633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:23 Heat of formation + Delta-G solvation = 66.436200 kcal Electronic energy + Delta-G solvation = -28305.124509 eV Core-core repulsion = 24282.915782 eV Total energy + Delta-G solvation = -4022.208727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.67109 -40.99335 -39.87089 -38.83572 -38.44031 -35.46569 -34.38978 -33.27404 -32.38260 -31.93318 -31.27431 -29.68619 -28.74943 -27.52279 -25.90065 -23.91888 -23.54737 -23.37249 -22.41917 -21.12910 -20.60460 -19.88844 -19.07903 -18.62025 -17.27836 -17.22124 -16.92345 -16.67790 -16.28778 -16.19112 -15.84180 -15.60757 -15.41720 -15.21861 -15.04633 -14.72726 -14.47272 -14.38412 -14.21544 -14.05833 -13.99539 -13.80580 -13.59129 -13.16574 -12.94228 -12.80814 -12.68068 -12.43809 -12.38958 -12.16394 -12.15078 -11.93862 -11.52300 -11.18185 -10.85186 -10.74311 -10.31382 -9.98487 -9.87939 -9.03050 -8.77708 -8.52967 -6.17098 -0.97686 0.12721 0.36752 0.59647 0.65794 1.19708 1.38939 1.39518 1.48564 1.54056 1.87409 2.15770 2.71099 2.79604 2.84422 3.12562 3.25574 3.40514 3.70441 3.85059 3.95791 4.00816 4.04211 4.06668 4.26769 4.32435 4.43394 4.46043 4.52906 4.54480 4.61626 4.69032 4.79131 4.83512 4.92037 4.92845 5.07072 5.12151 5.20693 5.24493 5.36620 5.43961 5.51439 5.52199 5.56558 5.61668 5.63629 5.96794 6.00748 6.04223 6.47784 6.69043 6.91772 7.67150 8.67819 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.001929 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.775372 B =14511.606224 C =14976.300520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.167 3.833 3 N -0.283 5.283 4 N -0.419 5.419 5 C 0.146 3.854 6 C -0.176 4.176 7 C -0.095 4.095 8 C -0.136 4.136 9 C -0.094 4.094 10 C -0.147 4.147 11 C 0.517 3.483 12 O -0.533 6.533 13 C -0.304 4.304 14 C 0.170 3.830 15 C -0.209 4.209 16 C -0.007 4.007 17 C -0.207 4.207 18 C 0.150 3.850 19 O -0.209 6.209 20 C -0.414 4.414 21 H 0.112 0.888 22 C -0.015 4.015 23 N -0.907 5.907 24 Si 1.015 2.985 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.256 1.256 28 C -0.251 4.251 29 C -0.010 4.010 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.276 0.724 42 H 0.129 0.871 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.784 10.036 -3.637 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.018 4.018 3 N -0.091 5.091 4 N -0.225 5.225 5 C 0.054 3.946 6 C -0.196 4.196 7 C -0.113 4.113 8 C -0.154 4.154 9 C -0.112 4.112 10 C -0.167 4.167 11 C 0.312 3.688 12 O -0.413 6.413 13 C -0.310 4.310 14 C 0.148 3.852 15 C -0.210 4.210 16 C -0.025 4.025 17 C -0.226 4.226 18 C 0.096 3.904 19 O -0.113 6.113 20 C -0.489 4.489 21 H 0.129 0.871 22 C -0.215 4.215 23 N -0.543 5.543 24 Si 0.834 3.166 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.180 1.180 28 C -0.270 4.270 29 C -0.028 4.028 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.181 0.819 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.085 10.890 -3.380 21.380 hybrid contribution -0.714 -1.444 -0.239 1.628 sum 17.371 9.447 -3.619 20.102 Atomic orbital electron populations 1.20994 0.83167 1.05194 1.05339 1.24431 0.97536 0.88227 0.91571 1.76051 0.86607 1.25031 1.21458 1.46647 1.03936 1.05578 1.66371 1.18010 0.85062 0.89574 1.01977 1.21516 0.90799 1.02305 1.05027 1.21329 0.98921 0.93302 0.97748 1.21581 0.97711 0.95586 1.00553 1.21393 0.91789 1.00589 0.97444 1.21024 1.01288 0.90308 1.04072 1.19277 0.90338 0.82287 0.76923 1.90740 1.34208 1.64562 1.51774 1.21631 0.92324 0.95262 1.21816 1.23017 0.94568 0.92943 0.74692 1.18537 0.93425 1.05556 1.03483 1.20950 0.91487 0.94720 0.95375 1.20039 0.96148 1.02416 1.04041 1.20280 0.84614 0.92181 0.93286 1.83851 1.21167 1.57792 1.48445 1.21915 0.93517 1.23423 1.10070 0.87081 1.26580 0.95573 0.99624 0.99710 1.70108 1.08006 1.43069 1.33107 0.84684 0.77160 0.77573 0.77174 1.18094 1.20058 1.18010 1.20954 0.96487 1.06692 1.02883 1.20991 0.93092 0.92057 0.96647 0.87429 0.89037 0.88664 0.85038 0.83085 0.82339 0.82461 0.85118 0.81938 0.83855 0.85706 0.91523 0.85328 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 8.17 71.24 0.58 -1.32 16 2 C 0.17 4.36 7.00 45.17 0.32 4.67 16 3 N -0.28 -8.37 11.47 -43.13 -0.49 -8.86 16 4 N -0.42 -13.36 3.74 -306.12 -1.15 -14.51 16 5 C 0.15 4.30 6.67 38.13 0.25 4.55 16 6 C -0.18 -4.80 9.36 22.39 0.21 -4.59 16 7 C -0.09 -1.85 10.04 22.25 0.22 -1.63 16 8 C -0.14 -2.15 10.04 22.29 0.22 -1.92 16 9 C -0.09 -1.65 10.04 22.25 0.22 -1.42 16 10 C -0.15 -3.56 9.63 22.39 0.22 -3.35 16 11 C 0.52 16.86 8.05 86.61 0.70 17.55 16 12 O -0.53 -19.04 15.16 -4.88 -0.07 -19.11 16 13 C -0.30 -8.19 6.04 -18.54 -0.11 -8.30 16 14 C 0.17 3.80 9.87 24.38 0.24 4.04 16 15 C -0.21 -5.07 4.25 -20.16 -0.09 -5.16 16 16 C -0.01 -0.18 5.57 22.39 0.12 -0.06 16 17 C -0.21 -6.84 9.93 22.12 0.22 -6.62 16 18 C 0.15 6.06 6.66 22.79 0.15 6.22 16 19 O -0.21 -10.81 9.74 -18.70 -0.18 -10.99 16 20 C -0.41 -21.00 9.48 67.96 0.64 -20.35 16 21 H 0.11 5.02 5.18 -2.91 -0.02 5.01 16 22 C -0.01 -0.75 5.50 84.88 0.47 -0.29 16 23 N -0.91 -50.60 13.67 21.64 0.30 -50.31 16 24 Si 1.01 38.30 29.55 68.60 2.03 40.32 16 25 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 26 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 28 C -0.25 -8.57 9.10 22.12 0.20 -8.37 16 29 C -0.01 -0.25 9.76 22.39 0.22 -0.03 16 30 H 0.11 2.07 6.21 -2.39 -0.01 2.06 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 2.17 5.86 -2.39 -0.01 2.16 16 33 H 0.13 4.08 5.37 -2.91 -0.02 4.06 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.13 3.15 7.64 -2.91 -0.02 3.13 16 38 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.14 3.11 6.47 -2.91 -0.02 3.09 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.13 4.49 5.61 -2.91 -0.02 4.48 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -68.49 366.94 6.52 -61.97 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.07 Total: 27.86 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 5.02 Total: -26.38 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.34 Total: -73.68 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.26 Total: -30.10 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.32 kcal Total: -68.49 6.52 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100201633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.411 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds