Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46834 * 2 1 4 4 C 1.50704 * 109.47214 * 119.99808 * 2 1 3 5 5 N 1.30268 * 126.28406 * 299.99721 * 4 2 1 6 6 N 1.28671 * 109.37921 * 179.73227 * 5 4 2 7 7 C 1.30269 * 109.38095 * 0.44561 * 6 5 4 8 8 C 1.50700 * 126.28335 * 179.82677 * 7 6 5 9 9 N 1.46493 * 109.47350 * 89.69128 * 8 7 6 10 10 N 1.40070 * 126.03821 * 89.97086 * 9 8 7 11 11 C 1.30832 * 108.34210 * 180.02562 * 10 9 8 12 12 C 1.50698 * 125.85930 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47163 * 246.03238 * 12 11 10 14 14 C 1.53004 * 109.47081 * 6.02954 * 12 11 10 15 15 C 1.53000 * 109.47294 * 126.03409 * 12 11 10 16 16 C 1.39819 * 108.28392 * 0.02562 * 11 10 9 17 17 C 1.50695 * 126.08515 * 179.97438 * 16 11 10 18 18 C 1.50705 * 109.46951 * 95.75537 * 17 16 11 19 19 H 1.07990 * 119.99898 * 359.72810 * 18 17 16 20 20 C 1.37883 * 119.99696 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99723 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47321 * 89.99899 * 22 20 18 24 24 H 1.48502 * 109.46846 * 210.00293 * 22 20 18 25 25 H 1.48501 * 109.47076 * 329.99718 * 22 20 18 26 26 C 1.35135 * 126.03585 * 270.29096 * 9 8 7 27 27 O 1.35758 * 126.19145 * 359.97438 * 26 9 8 28 28 O 1.34363 * 126.27651 * 120.00434 * 4 2 1 29 29 H 1.08999 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46636 * 299.99846 * 1 2 3 31 31 H 1.08998 * 109.47703 * 59.99892 * 1 2 3 32 32 H 1.08997 * 109.46925 * 240.00269 * 2 1 3 33 33 H 1.09003 * 109.46879 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47296 * 300.00017 * 3 2 1 35 35 H 1.08998 * 109.47413 * 59.99928 * 3 2 1 36 36 H 1.08993 * 109.46877 * 329.68909 * 8 7 6 37 37 H 1.09003 * 109.46754 * 209.69237 * 8 7 6 38 38 H 1.09005 * 109.46994 * 64.89183 * 13 12 11 39 39 H 1.08999 * 109.47405 * 184.88241 * 13 12 11 40 40 H 1.08996 * 109.47227 * 304.88897 * 13 12 11 41 41 H 1.09003 * 109.46656 * 60.00371 * 14 12 11 42 42 H 1.08998 * 109.47270 * 179.97438 * 14 12 11 43 43 H 1.08996 * 109.47363 * 300.00388 * 14 12 11 44 44 H 1.08991 * 109.47202 * 59.99908 * 15 12 11 45 45 H 1.08998 * 109.47253 * 180.02562 * 15 12 11 46 46 H 1.09004 * 109.46476 * 299.99926 * 15 12 11 47 47 H 1.08998 * 109.47060 * 335.75650 * 17 16 11 48 48 H 1.09004 * 109.47509 * 215.75813 * 17 16 11 49 49 H 0.96994 * 120.00185 * 180.02562 * 21 20 18 50 50 H 0.96703 * 114.00066 * 270.14128 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7944 -0.3737 2.4662 6 7 2.3766 -1.2067 3.2554 7 6 3.0135 -2.0976 2.5500 8 6 3.8262 -3.2469 3.0884 9 7 2.9618 -4.4167 3.2629 10 7 2.7088 -5.4049 2.3029 11 6 1.8911 -6.2840 2.8227 12 6 1.3596 -7.5126 2.1305 13 6 -0.1516 -7.3741 1.9349 14 6 2.0385 -7.6641 0.7678 15 6 1.6520 -8.7468 2.9862 16 6 1.5941 -5.8875 4.1302 17 6 0.6890 -6.6115 5.0933 18 6 1.5152 -7.4980 5.9893 19 1 2.5878 -7.5368 5.8700 20 6 0.9010 -8.2632 6.9580 21 7 -0.4057 -8.2200 7.0996 22 14 1.9251 -9.3614 8.0690 23 1 2.3305 -8.6015 9.2787 24 1 1.1220 -10.5435 8.4730 25 1 3.1368 -9.8125 7.3386 26 6 2.2631 -4.7299 4.3763 27 8 2.2362 -4.0187 5.5324 28 8 2.8081 -1.8072 1.2543 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 4.2581 -2.9676 4.0493 37 1 4.6252 -3.4868 2.3869 38 1 -0.3556 -6.5470 1.2549 39 1 -0.5495 -8.2973 1.5135 40 1 -0.6261 -7.1795 2.8966 41 1 3.1150 -7.7628 0.9072 42 1 1.6544 -8.5530 0.2673 43 1 1.8301 -6.7849 0.1582 44 1 1.1684 -8.6388 3.9569 45 1 1.2680 -9.6355 2.4853 46 1 2.7286 -8.8454 3.1255 47 1 -0.0223 -7.2206 4.5354 48 1 0.1480 -5.8850 5.6997 49 1 -0.8378 -8.7580 7.7813 50 1 2.9183 -4.2753 6.1680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101811034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = 55.930927 kcal Electronic energy + Delta-G solvation = -31844.761394 eV Core-core repulsion = 27682.914050 eV Total energy + Delta-G solvation = -4161.847344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.32686 -41.01258 -37.14588 -36.42003 -36.19671 -35.96545 -33.69167 -33.04459 -30.56424 -29.78644 -27.63132 -27.39940 -26.75681 -26.47691 -26.03412 -24.52312 -23.07357 -22.76107 -21.29260 -21.01583 -20.06287 -18.35909 -17.69503 -17.48080 -17.02116 -16.36416 -16.09371 -15.53900 -15.31533 -14.82807 -14.53849 -14.51987 -14.08196 -13.77180 -13.60831 -13.30624 -13.17187 -12.70797 -12.65980 -12.54331 -12.41061 -12.28778 -12.15080 -11.87928 -11.74231 -11.73396 -11.66983 -11.57572 -11.47000 -11.30346 -11.02853 -10.93688 -10.82652 -10.76245 -10.54777 -10.42520 -10.28512 -9.79773 -9.61518 -9.43540 -9.31082 -8.67899 -8.36976 -7.49761 -6.00284 -4.03209 0.92035 1.87251 2.19208 2.30938 2.83179 3.29662 3.34072 3.37835 3.43225 3.57994 4.08987 4.29342 4.45037 4.54373 4.55820 4.67234 4.75667 4.96101 5.03540 5.16543 5.20820 5.27071 5.32083 5.35168 5.38283 5.39507 5.46515 5.50854 5.54994 5.73678 5.78479 5.88074 5.96189 6.09529 6.19775 6.24157 6.29853 6.38023 6.49132 6.57729 6.60282 6.78509 6.85704 6.99923 7.26340 7.33795 7.68548 7.78408 7.96104 8.13932 8.20108 8.23206 8.38777 9.00782 9.59048 11.08546 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003053 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.149061 B = 9167.609972 C =10055.505482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.004 3.996 3 C -0.144 4.144 4 C 0.167 3.833 5 N -0.283 5.283 6 N -0.258 5.258 7 C 0.142 3.858 8 C 0.243 3.757 9 N -0.404 5.404 10 N -0.291 5.291 11 C 0.108 3.892 12 C 0.019 3.981 13 C -0.142 4.142 14 C -0.133 4.133 15 C -0.152 4.152 16 C -0.174 4.174 17 C 0.085 3.915 18 C -0.504 4.504 19 H 0.052 0.948 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.240 3.760 27 O -0.455 6.455 28 O -0.216 6.216 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.038 0.962 48 H 0.026 0.974 49 H 0.261 0.739 50 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 11.993 -15.194 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 C -0.202 4.202 4 C -0.044 4.044 5 N -0.130 5.130 6 N -0.106 5.106 7 C -0.071 4.071 8 C 0.118 3.882 9 N -0.200 5.200 10 N -0.114 5.114 11 C -0.058 4.058 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.190 4.190 15 C -0.210 4.210 16 C -0.185 4.185 17 C 0.047 3.953 18 C -0.542 4.542 19 H 0.071 0.929 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.715 3.285 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.077 3.923 27 O -0.256 6.256 28 O -0.094 6.094 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.126 0.874 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.071 0.929 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.094 13.329 -15.213 21.124 hybrid contribution 1.095 -1.509 0.759 2.013 sum 7.189 11.820 -14.454 20.008 Atomic orbital electron populations 1.21883 0.91603 1.03270 1.03686 1.19762 0.97165 0.95310 0.89362 1.21869 1.01511 0.93101 1.03727 1.28132 0.92407 0.85426 0.98451 1.74368 1.19054 1.21247 0.98364 1.74477 1.07724 1.01722 1.26665 1.28396 1.01280 1.00145 0.77241 1.19598 0.88650 0.76669 1.03272 1.48680 1.39997 1.19604 1.11686 1.77285 1.22145 0.99643 1.12347 1.22015 0.95003 0.95420 0.93387 1.18929 0.94983 0.90322 0.94055 1.21942 0.94070 1.01004 1.02921 1.21784 1.00431 1.00948 0.95852 1.22143 1.01993 0.94132 1.02723 1.20653 1.06248 0.94899 0.96653 1.17810 0.92469 0.93884 0.91142 1.21012 0.93301 1.24082 1.15811 0.92949 1.24964 0.94801 0.97022 0.97291 1.69943 1.08280 1.40796 1.33944 0.86676 0.80330 0.80399 0.81118 1.20802 1.21238 1.19915 1.18543 0.97616 0.92978 0.83211 1.84891 1.57051 1.60293 1.23414 1.84812 1.54264 1.39385 1.30981 0.91961 0.90933 0.90464 0.88099 0.92154 0.90515 0.90949 0.84879 0.86052 0.93507 0.92240 0.90661 0.92723 0.92813 0.92902 0.87379 0.93320 0.93362 0.94440 0.95594 0.92907 0.75296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 2 C 0.00 0.04 3.39 -91.77 -0.31 -0.28 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.17 2.23 6.99 -12.94 -0.09 2.14 16 5 N -0.28 -4.54 12.22 32.55 0.40 -4.14 16 6 N -0.26 -4.45 12.22 32.55 0.40 -4.06 16 7 C 0.14 2.17 8.06 -12.94 -0.10 2.07 16 8 C 0.24 3.22 7.01 -5.20 -0.04 3.18 16 9 N -0.40 -7.11 3.60 -62.67 -0.23 -7.34 16 10 N -0.29 -5.49 11.86 33.66 0.40 -5.09 16 11 C 0.11 2.15 5.61 -82.43 -0.46 1.69 16 12 C 0.02 0.34 0.75 -155.66 -0.12 0.22 16 13 C -0.14 -2.37 8.36 37.16 0.31 -2.06 16 14 C -0.13 -1.98 7.96 37.16 0.30 -1.68 16 15 C -0.15 -2.80 8.24 37.16 0.31 -2.49 16 16 C -0.17 -3.81 5.11 -104.85 -0.54 -4.34 16 17 C 0.08 2.11 4.42 -29.03 -0.13 1.98 16 18 C -0.50 -13.13 7.49 -34.44 -0.26 -13.39 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 22 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.24 4.80 7.92 -16.92 -0.13 4.67 16 27 O -0.45 -8.49 13.53 -18.98 -0.26 -8.74 16 28 O -0.22 -3.18 10.87 5.37 0.06 -3.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.43 5.68 -51.93 -0.30 1.14 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 2.36 4.16 -51.93 -0.22 2.14 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.04 0.96 4.59 -51.93 -0.24 0.72 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.39 5.57 9.06 45.56 0.41 5.98 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -33.62 411.53 -5.06 -38.68 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.06 Total: 4.79 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.68 Total: -8.25 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 1.71 Total: -45.23 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.20 Total: -11.87 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.62 -5.06 -38.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101811034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.610 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds