Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48506 * 109.46964 * 90.00237 * 3 2 1 5 5 H 1.48500 * 109.47413 * 209.99973 * 3 2 1 6 6 H 1.48497 * 109.47363 * 330.00013 * 3 2 1 7 7 C 1.37870 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99991 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00301 * 180.02562 * 7 2 1 10 10 P 1.87007 * 109.47298 * 179.97438 * 9 7 2 11 11 H 5.46043 * 127.31348 * 180.02562 * 2 1 3 12 12 C 1.86996 * 89.99918 * 185.35589 * 10 9 7 13 13 C 1.38238 * 120.00088 * 0.27618 * 12 10 9 14 14 C 1.38235 * 119.99739 * 179.97438 * 13 12 10 15 15 C 1.38234 * 120.00605 * 359.97438 * 14 13 12 16 16 C 1.38238 * 119.99546 * 359.97438 * 15 14 13 17 17 C 1.38239 * 119.99758 * 179.97438 * 12 10 9 18 18 C 1.86995 * 89.99646 * 305.35847 * 10 9 7 19 19 C 1.38239 * 120.00284 * 289.45827 * 18 10 9 20 20 C 1.38228 * 120.00263 * 179.97438 * 19 18 10 21 21 C 1.38238 * 120.00020 * 359.97438 * 20 19 18 22 22 C 1.38229 * 119.99933 * 359.97093 * 21 20 19 23 23 C 1.38232 * 120.00139 * 359.81947 * 22 21 20 24 24 C 1.86998 * 89.99993 * 65.35755 * 10 9 7 25 25 C 1.38235 * 120.00149 * 98.60118 * 24 10 9 26 26 C 1.38235 * 120.00371 * 179.97438 * 25 24 10 27 27 C 1.38239 * 119.99728 * 359.97438 * 26 25 24 28 28 C 1.38228 * 119.99926 * 359.97438 * 27 26 25 29 29 C 1.38236 * 120.00076 * 278.33081 * 24 10 9 30 30 H 0.96994 * 120.00491 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47087 * 299.99583 * 9 7 2 32 32 H 1.08995 * 109.47349 * 59.99851 * 9 7 2 33 33 H 1.07999 * 119.99754 * 359.97236 * 13 12 10 34 34 H 1.08006 * 119.99841 * 179.97438 * 14 13 12 35 35 H 1.07998 * 120.00278 * 179.97438 * 15 14 13 36 36 H 1.07999 * 120.00279 * 179.97438 * 16 15 14 37 37 H 1.07997 * 119.99866 * 0.23507 * 17 12 10 38 38 H 1.07995 * 119.99662 * 359.97438 * 19 18 10 39 39 H 1.07995 * 120.00190 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.99931 * 179.97438 * 21 20 19 41 41 H 1.08007 * 120.00009 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00184 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.00029 * 359.97438 * 25 24 10 44 44 H 1.08001 * 119.99782 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99576 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.00025 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.99671 * 0.23310 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4404 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 15 4.1350 -2.9570 -0.0001 11 1 4.6251 -4.3428 -0.0019 12 6 5.8902 -2.3363 0.1753 13 6 6.1394 -0.9784 0.2459 14 6 7.4369 -0.5197 0.3761 15 6 8.4852 -1.4187 0.4361 16 6 8.2359 -2.7766 0.3665 17 6 6.9381 -3.2356 0.2405 18 6 3.1142 -3.3180 1.5245 19 6 3.4715 -2.7687 2.7417 20 6 2.7166 -3.0351 3.8685 21 6 1.6039 -3.8504 3.7782 22 6 1.2459 -4.3988 2.5609 23 6 1.9983 -4.1289 1.4331 24 6 3.4006 -3.2165 -1.7001 25 6 4.2033 -3.1225 -2.8216 26 6 3.6605 -3.3149 -4.0783 27 6 2.3150 -3.6019 -4.2135 28 6 1.5126 -3.6970 -3.0920 29 6 2.0560 -3.5080 -1.8351 30 1 -0.4850 0.8399 -0.0004 31 1 3.8752 -0.6795 -0.8895 32 1 3.8745 -0.6807 0.8904 33 1 5.3203 -0.2760 0.1994 34 1 7.6316 0.5413 0.4309 35 1 9.4989 -1.0602 0.5374 36 1 9.0549 -3.4791 0.4130 37 1 6.7433 -4.2965 0.1864 38 1 4.3405 -2.1314 2.8121 39 1 2.9960 -2.6063 4.8195 40 1 1.0143 -4.0589 4.6587 41 1 0.3768 -5.0362 2.4904 42 1 1.7189 -4.5577 0.4821 43 1 5.2546 -2.8987 -2.7160 44 1 4.2877 -3.2410 -4.9544 45 1 1.8909 -3.7518 -5.1953 46 1 0.4613 -3.9208 -3.1976 47 1 1.4290 -3.5821 -0.9588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104094205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = 147.763387 kcal Electronic energy + Delta-G solvation = -28073.825229 eV Core-core repulsion = 24654.678305 eV Total energy + Delta-G solvation = -3419.146924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.134 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -38.55912 -38.21377 -37.96863 -32.92989 -31.09176 -30.66745 -30.59744 -30.20943 -29.97518 -29.70171 -28.13908 -23.08876 -22.41713 -22.21722 -21.75574 -21.74820 -21.52583 -21.04705 -17.47656 -17.32890 -16.42845 -16.16012 -15.66194 -14.89213 -14.64172 -14.52181 -14.27944 -14.17085 -14.11102 -13.78922 -13.18788 -13.09031 -12.97891 -12.91189 -12.69502 -12.52423 -12.42220 -12.22802 -12.09226 -11.63858 -11.58116 -11.32655 -10.81531 -10.73620 -10.61771 -10.49848 -10.37812 -10.12049 -9.98211 -9.80892 -9.13974 -8.86767 -8.68205 -8.47415 -8.36778 -8.27846 -8.26274 -8.18175 -7.87024 -5.96495 -3.91081 1.37739 1.64663 1.83914 1.89780 2.02616 2.04853 2.38002 3.31048 3.39692 3.41671 3.93351 4.34945 4.38943 4.53248 5.10245 5.10889 5.21064 5.30559 5.33961 5.40662 5.44326 5.46808 5.50545 5.52698 5.58354 5.63717 5.69361 5.79606 5.89984 6.00619 6.09452 6.15720 6.16785 6.23359 6.48233 6.51317 6.55231 6.57901 6.62190 6.63220 6.68334 6.84217 6.89290 6.94389 6.94992 6.99374 7.04429 7.06628 7.08484 7.12035 7.27957 7.63675 7.67176 7.87937 8.42600 9.04822 9.69821 11.15668 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.006869 B = 0.006024 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4075.052066 B = 4647.199190 C = 5270.093140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.074 3.926 3 Si 0.865 3.135 4 H -0.281 1.281 5 H -0.266 1.266 6 H -0.293 1.293 7 C -0.484 4.484 8 H 0.086 0.914 9 C -0.671 4.671 10 P 2.913 2.087 11 H -0.510 1.510 12 C -0.748 4.748 13 C -0.060 4.060 14 C -0.151 4.151 15 C -0.098 4.098 16 C -0.150 4.150 17 C -0.060 4.060 18 C -0.684 4.684 19 C -0.064 4.064 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.131 4.131 23 C -0.066 4.066 24 C -0.703 4.703 25 C -0.080 4.080 26 C -0.145 4.145 27 C -0.110 4.110 28 C -0.136 4.136 29 C -0.038 4.038 30 H 0.259 0.741 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -9.560 0.214 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.207 1.207 5 H -0.190 1.190 6 H -0.219 1.219 7 C -0.522 4.522 8 H 0.103 0.897 9 C -0.696 4.696 10 P 2.930 2.070 11 H -0.569 1.569 12 C -0.738 4.738 13 C -0.077 4.077 14 C -0.169 4.169 15 C -0.116 4.116 16 C -0.168 4.168 17 C -0.078 4.078 18 C -0.674 4.674 19 C -0.082 4.082 20 C -0.154 4.154 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.693 4.693 25 C -0.098 4.098 26 C -0.163 4.163 27 C -0.128 4.128 28 C -0.154 4.154 29 C -0.056 4.056 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.139 -8.862 0.211 14.236 hybrid contribution -0.075 2.367 -0.036 2.368 sum 11.064 -6.496 0.174 12.831 Atomic orbital electron populations 1.69884 1.06131 1.26443 1.51880 1.24926 0.94352 0.98642 0.94692 0.86995 0.80798 0.84714 0.78178 1.20672 1.19027 1.21910 1.20619 0.87302 0.94794 1.49436 0.89678 1.31665 1.06529 1.30355 1.01098 0.82822 0.38610 0.46730 0.38866 1.56934 1.35280 1.28713 1.00469 1.09328 1.21909 0.97518 0.95757 0.92533 1.21380 0.93798 0.99419 1.02318 1.21238 0.98606 0.93787 0.98003 1.21246 0.97282 0.95547 1.02743 1.21217 0.92336 0.99661 0.94598 1.34691 1.10750 1.01790 1.20161 1.20582 0.98729 0.96682 0.92250 1.21072 0.96452 0.99420 0.98419 1.21012 0.96797 0.97738 0.97361 1.21088 0.99584 1.00783 0.93467 1.20727 0.93901 0.95881 0.97849 1.34802 1.03016 1.05335 1.26131 1.20678 0.98430 0.98065 0.92582 1.21049 0.95493 1.02498 0.97272 1.21064 0.94133 0.99565 0.98042 1.21203 0.99346 1.01445 0.93391 1.21022 0.93587 0.93140 0.97842 0.93110 0.93296 0.93715 0.83213 0.86540 0.86684 0.86327 0.84823 0.86798 0.87032 0.87098 0.86760 0.86405 0.86758 0.86993 0.87073 0.86608 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.86 22.22 27.47 -169.99 -4.67 17.55 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 6 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 7 C -0.48 -12.52 7.35 -34.44 -0.25 -12.78 16 8 H 0.09 2.18 3.81 -52.48 -0.20 1.98 16 9 C -0.67 -14.45 1.23 36.01 0.04 -14.40 16 10 P 2.91 49.84 3.25 -42.89 -0.14 49.70 16 11 H -0.51 -7.21 8.47 56.52 0.48 -6.73 16 12 C -0.75 -11.78 6.40 -39.58 -0.25 -12.04 16 13 C -0.06 -0.99 8.68 -39.58 -0.34 -1.33 16 14 C -0.15 -2.20 10.05 -39.58 -0.40 -2.60 16 15 C -0.10 -1.26 10.05 -39.58 -0.40 -1.66 16 16 C -0.15 -1.90 10.05 -39.58 -0.40 -2.30 16 17 C -0.06 -0.84 9.62 -39.58 -0.38 -1.22 16 18 C -0.68 -12.55 4.02 -39.58 -0.16 -12.71 16 19 C -0.06 -1.15 9.41 -39.58 -0.37 -1.53 16 20 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 21 C -0.11 -1.84 10.05 -39.58 -0.40 -2.24 16 22 C -0.13 -2.24 10.05 -39.59 -0.40 -2.64 16 23 C -0.07 -1.19 8.24 -39.58 -0.33 -1.51 16 24 C -0.70 -12.83 4.92 -39.58 -0.19 -13.03 16 25 C -0.08 -1.34 9.85 -39.58 -0.39 -1.73 16 26 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 16 27 C -0.11 -1.79 10.05 -39.58 -0.40 -2.18 16 28 C -0.14 -2.42 10.05 -39.58 -0.40 -2.81 16 29 C -0.04 -0.73 7.90 -39.58 -0.31 -1.05 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.05 1.08 6.41 -51.93 -0.33 0.75 16 32 H 0.05 0.95 5.79 -51.93 -0.30 0.65 16 33 H 0.15 2.66 4.56 -52.49 -0.24 2.42 16 34 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.53 7.42 -52.49 -0.39 1.14 16 38 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.12 1.87 5.79 -52.49 -0.30 1.57 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 44 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 47 H 0.13 2.49 3.87 -52.49 -0.20 2.29 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -33.37 382.00 -10.21 -43.58 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.31 Total: 3.27 kcal Atomic # 6 Polarization: -86.55 SS G_CDS: -6.62 Total: -93.17 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Atomic # 15 Polarization: 49.84 SS G_CDS: -0.14 Total: 49.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.37 -10.21 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104094205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.342 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds