Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09008 * 109.46733 * 2 1 4 4 C 1.52994 * 109.46931 * 240.00424 * 2 1 3 5 5 C 1.53005 * 117.50385 * 65.35914 * 4 2 1 6 6 C 1.53005 * 60.03082 * 252.49719 * 5 4 2 7 7 N 1.46893 * 109.46932 * 120.00281 * 2 1 3 8 8 C 1.46903 * 111.00230 * 290.62284 * 7 2 1 9 9 C 1.50705 * 109.47010 * 293.95878 * 8 7 2 10 10 H 1.08005 * 119.99836 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00320 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99621 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00215 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47264 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47083 * 120.00382 * 13 11 9 16 16 H 1.48500 * 109.47490 * 239.99914 * 13 11 9 17 17 C 1.46899 * 111.00197 * 54.57904 * 7 2 1 18 18 C 1.50701 * 109.47294 * 163.90049 * 17 7 2 19 19 O 1.21289 * 119.99649 * 353.96547 * 18 17 7 20 20 N 1.34773 * 120.00442 * 173.96802 * 18 17 7 21 21 C 1.46496 * 120.00331 * 180.02562 * 20 18 17 22 22 H 1.09005 * 109.46853 * 324.99111 * 21 20 18 23 23 C 1.52992 * 109.47491 * 84.99656 * 21 20 18 24 24 C 1.50706 * 109.47032 * 204.99946 * 21 20 18 25 25 C 1.38247 * 119.97319 * 319.72380 * 24 21 20 26 26 C 1.38191 * 120.02570 * 179.72755 * 25 24 21 27 27 C 1.38456 * 119.97456 * 0.52242 * 26 25 24 28 28 F 1.35104 * 120.03167 * 179.72436 * 27 26 25 29 29 C 1.38459 * 119.94973 * 359.75137 * 27 26 25 30 30 C 1.38200 * 119.97308 * 359.97438 * 29 27 26 31 31 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46888 * 299.99642 * 1 2 3 33 33 H 1.09005 * 109.46933 * 59.99840 * 1 2 3 34 34 H 1.08998 * 115.55025 * 211.02798 * 4 2 1 35 35 H 1.09003 * 117.49434 * 0.02562 * 5 4 2 36 36 H 1.08999 * 117.49623 * 144.99392 * 5 4 2 37 37 H 1.09004 * 117.49457 * 107.50223 * 6 5 4 38 38 H 1.08995 * 117.49620 * 252.51736 * 6 5 4 39 39 H 1.08999 * 109.47262 * 53.95057 * 8 7 2 40 40 H 1.08995 * 109.47131 * 173.96051 * 8 7 2 41 41 H 0.97005 * 119.99557 * 179.97438 * 12 11 9 42 42 H 1.09005 * 109.46664 * 283.89742 * 17 7 2 43 43 H 1.09001 * 109.47381 * 43.89674 * 17 7 2 44 44 H 0.97003 * 119.99621 * 359.97438 * 20 18 17 45 45 H 1.09008 * 109.47176 * 179.97438 * 23 21 20 46 46 H 1.08999 * 109.47258 * 300.00245 * 23 21 20 47 47 H 1.09003 * 109.47307 * 60.00348 * 23 21 20 48 48 H 1.08007 * 119.98344 * 359.97438 * 25 24 21 49 49 H 1.08004 * 120.01647 * 180.29104 * 26 25 24 50 50 H 1.08006 * 120.01949 * 179.97438 * 29 27 26 51 51 H 1.07997 * 119.99103 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.7421 -0.0801 -2.6062 6 6 0.9978 -1.3470 -2.1795 7 7 2.0197 -0.6925 1.1994 8 6 1.7397 0.0903 2.4105 9 6 2.5416 1.3660 2.3806 10 1 3.1942 1.5741 1.5455 11 6 2.4421 2.2674 3.4191 12 7 1.6477 2.0136 4.4361 13 14 3.4365 3.8482 3.3823 14 1 4.2465 3.8946 2.1385 15 1 2.5159 5.0130 3.4167 16 1 4.3370 3.8942 4.5621 17 6 1.4458 -2.0410 1.2998 18 6 2.2443 -2.8547 2.2853 19 8 3.2602 -2.3986 2.7660 20 7 1.8297 -4.0892 2.6326 21 6 2.6057 -4.8800 3.5911 22 1 3.6680 -4.6780 3.4529 23 6 2.1955 -4.5010 5.0154 24 6 2.3396 -6.3460 3.3648 25 6 1.0581 -6.7794 3.0800 26 6 0.8138 -8.1227 2.8668 27 6 1.8511 -9.0360 2.9492 28 9 1.6126 -10.3503 2.7464 29 6 3.1332 -8.6015 3.2401 30 6 3.3761 -7.2569 3.4474 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.9912 -1.2413 -1.1365 35 1 1.1830 0.8556 -2.6089 36 1 2.4973 -0.1786 -3.3860 37 1 -0.0512 -1.2449 -1.9015 38 1 1.2636 -2.2790 -2.6783 39 1 0.6772 0.3300 2.4507 40 1 2.0147 -0.4911 3.2905 41 1 1.5780 2.6477 5.1670 42 1 0.4122 -1.9716 1.6390 43 1 1.4758 -2.5225 0.3223 44 1 1.0171 -4.4538 2.2484 45 1 2.7726 -5.0898 5.7286 46 1 2.3880 -3.4407 5.1791 47 1 1.1333 -4.7030 5.1535 48 1 0.2482 -6.0673 3.0202 49 1 -0.1866 -8.4606 2.6396 50 1 3.9432 -9.3131 3.3051 51 1 4.3761 -6.9177 3.6739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106671049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = -21.147464 kcal Electronic energy + Delta-G solvation = -30885.532739 eV Core-core repulsion = 26700.423064 eV Total energy + Delta-G solvation = -4185.109675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.17333 -40.12996 -39.15781 -38.16091 -35.60491 -34.88217 -32.46899 -31.74016 -31.33943 -29.46362 -28.96171 -27.84809 -25.59853 -24.15439 -23.72334 -23.38184 -22.18894 -21.45558 -20.75754 -19.98889 -18.49026 -17.99296 -17.06078 -16.73710 -16.34010 -16.01344 -15.86912 -15.53963 -15.19161 -15.05810 -14.55010 -14.32960 -14.19690 -13.88977 -13.83844 -13.70148 -13.35937 -13.29014 -12.93445 -12.72266 -12.48050 -12.39348 -12.21177 -11.83719 -11.72022 -11.44942 -11.39669 -11.36041 -11.07967 -11.03998 -10.97547 -10.61184 -10.50788 -10.34408 -10.08847 -9.70206 -9.49957 -9.44823 -9.29680 -9.01145 -8.94642 -8.75452 -8.33914 -7.18545 -5.94410 -3.93069 0.78817 0.89522 3.16432 3.20118 3.36267 3.43687 3.45090 3.49279 3.94252 4.09834 4.37021 4.39132 4.49692 4.56361 4.79980 4.91844 5.00793 5.11025 5.19382 5.24356 5.29124 5.38764 5.41683 5.42437 5.55314 5.60420 5.65182 5.74147 5.76270 5.78485 5.79453 5.82647 5.86882 5.90411 5.93818 5.98681 6.07397 6.19946 6.29474 6.30595 6.32560 6.46920 6.54952 6.70253 6.70702 6.83824 7.36014 7.40255 7.74436 7.89677 8.19479 8.25997 8.58870 8.78862 9.13263 9.69472 11.16960 Molecular weight = 348.20amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.002686 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.664733 B =10420.855816 C =12230.208063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 H 0.100 0.900 4 C -0.134 4.134 5 C -0.181 4.181 6 C -0.196 4.196 7 N -0.508 5.508 8 C 0.193 3.807 9 C -0.496 4.496 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.285 1.285 17 C 0.038 3.962 18 C 0.512 3.488 19 O -0.497 6.497 20 N -0.740 5.740 21 C 0.186 3.814 22 H 0.097 0.903 23 C -0.160 4.160 24 C -0.093 4.093 25 C -0.085 4.085 26 C -0.149 4.149 27 C 0.092 3.908 28 F -0.142 7.142 29 C -0.150 4.150 30 C -0.079 4.079 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.084 0.916 39 H -0.008 1.008 40 H 0.039 0.961 41 H 0.258 0.742 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.393 0.607 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 -19.686 -6.226 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.010 3.990 3 H 0.118 0.882 4 C -0.152 4.152 5 C -0.218 4.218 6 C -0.233 4.233 7 N -0.232 5.232 8 C 0.068 3.932 9 C -0.535 4.535 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.211 1.211 17 C -0.094 4.094 18 C 0.298 3.702 19 O -0.369 6.369 20 N -0.396 5.396 21 C 0.081 3.919 22 H 0.115 0.885 23 C -0.218 4.218 24 C -0.094 4.094 25 C -0.103 4.103 26 C -0.168 4.168 27 C 0.073 3.927 28 F -0.121 7.121 29 C -0.169 4.169 30 C -0.098 4.098 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.009 0.991 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.227 0.773 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.151 0.849 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.269 -19.318 -5.737 20.279 hybrid contribution -0.919 0.398 -0.016 1.002 sum -3.189 -18.919 -5.753 20.030 Atomic orbital electron populations 1.22557 0.98674 1.00913 1.02116 1.21135 0.91365 0.98833 0.87713 0.88172 1.22506 0.99623 1.02504 0.90613 1.22883 1.03463 0.96968 0.98488 1.23159 0.98417 0.96693 1.05002 1.62024 1.56945 0.99695 1.04548 1.19817 0.94480 0.92617 0.86247 1.21146 1.24653 1.02196 1.05467 0.91928 1.24945 0.95728 0.98483 0.95475 1.69971 1.38476 1.36349 1.09255 0.86496 0.79997 0.83192 0.78064 1.19674 1.21304 1.21113 1.21872 0.95886 0.93591 0.98004 1.20894 0.86238 0.80705 0.82364 1.90755 1.24421 1.69021 1.52675 1.46208 1.28953 1.17363 1.47096 1.19672 0.97864 0.84907 0.89439 0.88468 1.22188 1.01513 1.03299 0.94802 1.20138 0.93609 0.95740 0.99904 1.20834 0.96682 0.94815 0.98008 1.21125 0.99039 0.93170 1.03494 1.17747 0.94506 0.77892 1.02530 1.91500 1.95207 1.32761 1.92601 1.21146 0.95633 0.97043 1.03054 1.20927 0.99429 0.91666 0.97749 0.93195 0.91604 0.93052 0.87472 0.89022 0.89399 0.88501 0.89738 0.99074 0.94290 0.93204 0.93149 0.89028 0.77266 0.91806 0.90790 0.92442 0.84916 0.84632 0.84614 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 7.08 37.16 0.26 -2.70 16 2 C 0.12 2.16 2.54 -67.72 -0.17 1.98 16 3 H 0.10 2.11 6.66 -51.92 -0.35 1.76 16 4 C -0.13 -2.01 4.62 -90.58 -0.42 -2.43 16 5 C -0.18 -2.31 9.95 -26.73 -0.27 -2.57 16 6 C -0.20 -2.37 9.34 -26.69 -0.25 -2.62 16 7 N -0.51 -10.64 4.04 -229.52 -0.93 -11.57 16 8 C 0.19 4.99 4.24 -4.97 -0.02 4.96 16 9 C -0.50 -14.07 8.38 -34.44 -0.29 -14.36 16 10 H 0.06 1.78 7.17 -52.48 -0.38 1.40 16 11 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 13 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.04 0.64 4.21 -4.98 -0.02 0.62 16 18 C 0.51 8.95 7.30 -10.99 -0.08 8.87 16 19 O -0.50 -11.18 14.90 5.55 0.08 -11.10 16 20 N -0.74 -9.38 5.03 -54.93 -0.28 -9.66 16 21 C 0.19 2.19 2.77 -69.09 -0.19 2.00 16 22 H 0.10 1.30 7.44 -51.93 -0.39 0.92 16 23 C -0.16 -1.93 9.46 37.15 0.35 -1.58 16 24 C -0.09 -0.88 4.95 -104.61 -0.52 -1.40 16 25 C -0.09 -0.71 9.05 -39.60 -0.36 -1.07 16 26 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 27 C 0.09 0.85 7.30 -39.42 -0.29 0.57 16 28 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 29 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 30 C -0.08 -0.69 9.67 -39.59 -0.38 -1.07 16 31 H 0.05 0.71 5.81 -51.93 -0.30 0.40 16 32 H 0.07 1.23 6.55 -51.93 -0.34 0.89 16 33 H 0.05 0.73 7.19 -51.93 -0.37 0.36 16 34 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.14 5.82 -51.93 -0.30 0.83 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H -0.01 -0.22 6.37 -51.93 -0.33 -0.56 16 40 H 0.04 1.13 6.57 -51.93 -0.34 0.79 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 0.80 7.14 -51.93 -0.37 0.43 16 43 H 0.09 1.31 6.73 -51.93 -0.35 0.96 16 44 H 0.39 3.80 6.88 -40.82 -0.28 3.52 16 45 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.13 0.90 6.93 -52.48 -0.36 0.53 16 49 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 50 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 51 H 0.14 0.99 8.04 -52.49 -0.42 0.57 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -33.19 408.29 -10.56 -43.75 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.81 Total: 5.63 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.53 Total: -12.62 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.47 Total: -47.55 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.19 -10.56 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106671049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.602 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds