Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86796 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47156 * 240.00021 * 3 2 1 5 5 H 1.48504 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47122 * 120.00327 * 3 2 1 7 7 C 1.38808 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99826 * 168.89817 * 7 2 1 9 9 N 1.37064 * 120.00166 * 348.88655 * 7 2 1 10 10 C 1.36262 * 124.87799 * 338.51574 * 9 7 2 11 11 C 1.36276 * 109.70165 * 179.97438 * 10 9 7 12 12 C 1.46938 * 126.70122 * 179.73664 * 11 10 9 13 13 N 1.30064 * 120.00108 * 180.02562 * 12 11 10 14 14 N 1.40108 * 120.00141 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99793 * 179.97438 * 14 13 12 16 16 O 1.21637 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.47554 * 119.99627 * 179.97438 * 15 14 13 18 18 C 1.39758 * 120.08997 * 359.72999 * 17 15 14 19 19 C 1.37708 * 119.90722 * 179.76286 * 18 17 15 20 20 C 1.39003 * 120.08691 * 0.50868 * 19 18 17 21 21 O 1.35721 * 119.90579 * 179.71820 * 20 19 18 22 22 C 1.38997 * 120.18496 * 359.74476 * 20 19 18 23 23 C 1.37703 * 120.08915 * 359.97438 * 22 20 19 24 24 C 1.47570 * 106.59643 * 0.02562 * 11 10 9 25 25 C 1.39200 * 133.90704 * 179.97438 * 24 11 10 26 26 C 1.37905 * 119.67928 * 180.02562 * 25 24 11 27 27 C 1.38671 * 120.29576 * 359.97205 * 26 25 24 28 28 C 1.37929 * 120.60384 * 0.06155 * 27 26 25 29 29 C 1.38330 * 124.87587 * 158.47318 * 9 7 2 30 30 H 0.97001 * 119.99589 * 359.97438 * 1 2 3 31 31 H 1.07998 * 125.15036 * 359.97438 * 10 9 7 32 32 H 1.08002 * 120.00102 * 0.02686 * 12 11 10 33 33 H 0.96995 * 119.99716 * 359.97438 * 14 13 12 34 34 H 1.08001 * 120.05033 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.95802 * 180.24844 * 19 18 17 36 36 H 0.96700 * 114.00238 * 270.02378 * 21 20 19 37 37 H 1.07993 * 119.95498 * 179.97438 * 22 20 19 38 38 H 1.07997 * 120.04214 * 179.97438 * 23 22 20 39 39 H 1.08000 * 120.15759 * 0.03689 * 25 24 11 40 40 H 1.08003 * 119.84898 * 179.97438 * 26 25 24 41 41 H 1.07998 * 119.70003 * 180.02562 * 27 26 25 42 42 H 1.07997 * 120.03095 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 3.1023 1.6964 -1.2125 5 1 1.2836 2.7465 0.0006 6 1 3.1024 1.6963 1.2125 7 6 2.0086 -1.2022 -0.0005 8 1 3.0734 -1.2108 -0.1806 9 7 1.3425 -2.3781 0.2277 10 6 0.1399 -2.4824 0.8597 11 6 -0.2366 -3.7909 0.9180 12 6 -1.4645 -4.3253 1.5226 13 7 -1.6942 -5.6054 1.5052 14 7 -2.8653 -6.1149 2.0813 15 6 -3.1035 -7.4413 2.0628 16 8 -2.3015 -8.1961 1.5464 17 6 -4.3366 -7.9779 2.6700 18 6 -5.2561 -7.1131 3.2697 19 6 -6.4080 -7.6174 3.8310 20 6 -6.6517 -8.9858 3.8108 21 8 -7.7855 -9.4795 4.3701 22 6 -5.7373 -9.8499 3.2200 23 6 -4.5857 -9.3530 2.6515 24 6 0.8333 -4.5669 0.2615 25 6 1.0275 -5.9221 0.0101 26 6 2.1677 -6.3387 -0.6443 27 6 3.1177 -5.4142 -1.0517 28 6 2.9377 -4.0686 -0.8083 29 6 1.7943 -3.6295 -0.1512 30 1 -0.4849 0.8401 0.0004 31 1 -0.4289 -1.6537 1.2547 32 1 -2.1764 -3.6551 1.9815 33 1 -3.5046 -5.5130 2.4934 34 1 -5.0652 -6.0503 3.2900 35 1 -7.1210 -6.9494 4.2911 36 1 -7.6955 -9.7082 5.3053 37 1 -5.9302 -10.9124 3.2068 38 1 -3.8755 -10.0251 2.1930 39 1 0.2888 -6.6439 0.3259 40 1 2.3214 -7.3896 -0.8404 41 1 4.0069 -5.7510 -1.5639 42 1 3.6836 -3.3567 -1.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107995334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = 51.020372 kcal Electronic energy + Delta-G solvation = -27955.111434 eV Core-core repulsion = 23866.808315 eV Total energy + Delta-G solvation = -4088.303119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.37527 -40.19845 -38.94988 -36.77809 -36.19983 -35.91203 -33.50534 -32.42002 -31.35480 -30.74719 -29.62004 -28.72089 -27.87995 -25.38365 -23.93789 -23.12036 -22.13346 -21.64071 -20.72669 -20.33545 -19.20272 -18.80683 -17.75489 -17.65801 -16.70056 -15.92328 -15.83509 -15.55624 -15.14988 -14.89492 -14.82998 -14.75361 -14.33548 -14.13023 -13.86197 -13.64889 -13.16952 -12.95185 -12.85446 -12.48953 -12.40814 -12.30661 -11.98023 -11.77843 -11.54781 -11.38658 -11.14867 -10.87104 -10.78621 -10.71801 -10.46296 -10.07707 -9.87569 -9.53556 -9.42920 -9.30836 -9.05732 -8.97544 -8.12570 -7.24511 -7.01801 -6.56412 -4.48669 0.45389 0.97695 1.90136 2.34300 2.65737 2.84336 2.85432 2.94374 2.96742 3.05188 3.61093 3.68261 3.79630 4.11144 4.43661 4.53930 4.57285 4.64484 4.71033 4.91749 5.00902 5.11381 5.29682 5.34042 5.57115 5.61330 5.81138 5.81815 5.92306 5.97517 6.00400 6.04825 6.32645 6.34534 6.41270 6.54700 6.76152 6.89416 6.96544 7.01811 7.08383 7.20125 7.38194 7.42340 7.48593 7.59728 7.86715 7.99214 8.01420 8.27067 8.76279 8.86856 9.17870 10.08102 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002158 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.739108 B =12972.656778 C =14780.111408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.339 4.339 8 H 0.110 0.890 9 N -0.273 5.273 10 C 0.133 3.867 11 C -0.244 4.244 12 C 0.194 3.806 13 N -0.287 5.287 14 N -0.581 5.581 15 C 0.571 3.429 16 O -0.510 6.510 17 C -0.133 4.133 18 C -0.072 4.072 19 C -0.152 4.152 20 C 0.126 3.874 21 O -0.499 6.499 22 C -0.153 4.153 23 C -0.042 4.042 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.108 4.108 29 C 0.046 3.954 30 H 0.284 0.716 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.372 0.628 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.394 0.606 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -8.698 8.688 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.128 0.872 9 N 0.066 4.934 10 C -0.013 4.013 11 C -0.255 4.255 12 C -0.011 4.011 13 N -0.094 5.094 14 N -0.321 5.321 15 C 0.358 3.642 16 O -0.384 6.384 17 C -0.138 4.138 18 C -0.090 4.090 19 C -0.171 4.171 20 C 0.082 3.918 21 O -0.310 6.310 22 C -0.171 4.171 23 C -0.061 4.061 24 C -0.073 4.073 25 C -0.094 4.094 26 C -0.181 4.181 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.195 0.805 32 H 0.120 0.880 33 H 0.209 0.791 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.251 0.749 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.857 -9.641 7.457 15.675 hybrid contribution -0.445 1.951 0.914 2.199 sum -10.302 -7.691 8.371 15.341 Atomic orbital electron populations 1.69847 1.06292 1.29439 1.42375 1.25534 0.95797 1.00742 0.94527 0.85718 0.79058 0.78811 0.79713 1.19132 1.20116 1.19031 1.19867 0.94304 0.81920 1.50578 0.87240 1.40053 1.14397 1.03922 1.35028 1.22188 0.88331 0.95606 0.95161 1.17894 0.96862 0.92061 1.18708 1.23577 0.94454 0.90421 0.92620 1.75424 1.01506 1.14694 1.17773 1.46827 1.20145 1.07577 1.57561 1.17745 0.85648 0.80851 0.79980 1.90791 1.46894 1.57012 1.43729 1.20021 0.95810 0.94720 1.03204 1.21241 0.92918 0.99579 0.95303 1.21351 0.97955 0.95010 1.02749 1.18725 0.85743 0.91237 0.96124 1.84765 1.31829 1.84732 1.29662 1.21424 0.93781 1.00609 1.01304 1.21188 0.96029 0.94025 0.94816 1.18796 0.94188 0.92460 1.01829 1.20573 0.96965 0.94125 0.97786 1.20691 0.95707 0.98287 1.03387 1.20506 0.99451 0.92296 1.03406 1.19907 0.96051 0.95325 1.01466 1.18473 0.97649 0.85448 1.04535 0.90575 0.80452 0.88009 0.79056 0.85148 0.84702 0.74921 0.84584 0.83861 0.85801 0.87533 0.87355 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.99 10.86 55.49 0.60 -19.39 16 2 C 0.04 0.99 5.34 -17.50 -0.09 0.90 16 3 Si 0.94 17.59 29.57 -169.99 -5.03 12.57 16 4 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 7 C -0.34 -8.19 9.89 -15.00 -0.15 -8.34 16 8 H 0.11 2.52 7.85 -52.49 -0.41 2.10 16 9 N -0.27 -6.71 2.90 -59.47 -0.17 -6.89 16 10 C 0.13 3.08 9.85 -16.29 -0.16 2.92 16 11 C -0.24 -5.43 6.27 -103.28 -0.65 -6.08 16 12 C 0.19 3.66 10.98 -14.78 -0.16 3.49 16 13 N -0.29 -5.63 9.81 32.08 0.31 -5.32 16 14 N -0.58 -9.18 6.21 30.47 0.19 -8.99 16 15 C 0.57 9.31 7.88 -12.46 -0.10 9.22 16 16 O -0.51 -10.39 16.68 5.25 0.09 -10.30 16 17 C -0.13 -1.62 5.87 -104.96 -0.62 -2.24 16 18 C -0.07 -0.67 9.53 -39.21 -0.37 -1.05 16 19 C -0.15 -1.26 9.97 -39.49 -0.39 -1.65 16 20 C 0.13 1.08 6.71 -39.02 -0.26 0.82 16 21 O -0.50 -3.55 13.49 -18.87 -0.25 -3.81 16 22 C -0.15 -1.36 9.97 -39.50 -0.39 -1.75 16 23 C -0.04 -0.46 9.59 -39.21 -0.38 -0.83 16 24 C -0.07 -1.58 6.25 -104.90 -0.66 -2.24 16 25 C -0.08 -1.68 9.81 -39.35 -0.39 -2.06 16 26 C -0.16 -3.20 10.03 -39.54 -0.40 -3.59 16 27 C -0.14 -2.63 10.02 -39.53 -0.40 -3.03 16 28 C -0.11 -2.29 9.93 -39.42 -0.39 -2.69 16 29 C 0.05 1.10 6.73 -83.82 -0.56 0.54 16 30 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 31 H 0.18 3.99 6.35 -52.49 -0.33 3.66 16 32 H 0.10 1.53 8.03 -52.49 -0.42 1.11 16 33 H 0.37 4.38 6.68 -182.60 -1.22 3.16 16 34 H 0.13 0.95 6.39 -52.49 -0.34 0.61 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.39 0.85 9.06 45.56 0.41 1.26 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 1.59 7.64 -52.49 -0.40 1.19 16 39 H 0.12 2.81 7.23 -52.49 -0.38 2.43 16 40 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -31.69 373.30 -9.49 -41.18 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.34 Total: 12.99 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -6.52 Total: -17.67 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.93 Total: -40.58 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.17 Total: -14.11 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.69 -9.49 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107995334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.199 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds