Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29785 * 126.21955 * 2 1 4 4 N 1.39457 * 111.33242 * 179.73923 * 3 2 1 5 5 C 1.40049 * 124.95291 * 179.97438 * 4 3 2 6 6 C 1.38903 * 120.06429 * 179.74888 * 5 4 3 7 7 C 1.38097 * 119.95206 * 179.71940 * 6 5 4 8 8 C 1.38286 * 120.08453 * 0.55486 * 7 6 5 9 9 C 1.38379 * 120.12625 * 359.71781 * 8 7 6 10 10 Cl 1.73605 * 119.97573 * 179.97438 * 9 8 7 11 11 C 1.38240 * 120.04628 * 0.02562 * 9 8 7 12 12 C 1.34839 * 110.09887 * 359.97438 * 4 3 2 13 13 O 1.21969 * 126.97499 * 179.97438 * 12 4 3 14 14 C 1.46805 * 106.05188 * 0.02562 * 12 4 3 15 15 C 1.38448 * 127.52182 * 180.02562 * 14 12 4 16 16 N 1.34853 * 119.99823 * 179.97438 * 15 14 12 17 17 N 1.40109 * 119.99974 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99910 * 180.02562 * 17 16 15 19 19 O 1.21684 * 120.00136 * 359.97438 * 18 17 16 20 20 C 1.46375 * 119.99914 * 180.02562 * 18 17 16 21 21 H 1.08001 * 120.00105 * 353.94149 * 20 18 17 22 22 C 1.40046 * 120.00223 * 173.93619 * 20 18 17 23 23 N 1.30678 * 119.99716 * 6.15155 * 22 20 18 24 24 Si 1.86800 * 120.00361 * 186.15002 * 22 20 18 25 25 H 1.48498 * 109.46726 * 94.98454 * 24 22 20 26 26 H 1.48497 * 109.47162 * 214.98703 * 24 22 20 27 27 H 1.48503 * 109.46991 * 334.98790 * 24 22 20 28 28 H 1.09005 * 109.46866 * 0.02562 * 1 2 3 29 29 H 1.08988 * 109.46979 * 120.02637 * 1 2 3 30 30 H 1.08996 * 109.46905 * 240.02914 * 1 2 3 31 31 H 1.08003 * 120.02254 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.95716 * 180.27385 * 7 6 5 33 33 H 1.08000 * 119.93321 * 179.69758 * 8 7 6 34 34 H 1.08002 * 120.04318 * 179.97438 * 11 9 8 35 35 H 1.07997 * 120.00195 * 359.97438 * 15 14 12 36 36 H 0.96996 * 120.00414 * 359.97438 * 16 15 14 37 37 H 0.96996 * 119.99627 * 359.97438 * 17 16 15 38 38 H 0.97000 * 119.99920 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2739 1.0470 0.0000 4 7 3.6216 0.6888 0.0059 5 6 4.6919 1.5920 0.0069 6 6 5.9990 1.1221 0.0183 7 6 7.0527 2.0147 0.0134 8 6 6.8082 3.3757 0.0087 9 6 5.5073 3.8477 0.0031 10 17 5.2048 5.5572 -0.0021 11 6 4.4486 2.9588 0.0026 12 6 3.7441 -0.6540 0.0105 13 8 4.7811 -1.2961 0.0158 14 6 2.3760 -1.1864 0.0067 15 6 1.9884 -2.5156 0.0097 16 7 0.6784 -2.8359 0.0059 17 7 0.2861 -4.1809 0.0085 18 6 -1.0230 -4.5010 0.0041 19 8 -1.8643 -3.6219 -0.0015 20 6 -1.4329 -5.9062 0.0073 21 1 -0.6908 -6.6854 -0.0856 22 6 -2.7873 -6.2403 0.1310 23 7 -3.6954 -5.3007 0.1225 24 14 -3.2957 -8.0291 0.3079 25 1 -3.4473 -8.3604 1.7475 26 1 -4.5885 -8.2475 -0.3892 27 1 -2.2552 -8.9013 -0.2938 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8897 30 1 -0.3633 -0.5134 0.8902 31 1 6.1911 0.0593 0.0268 32 1 8.0690 1.6494 0.0178 33 1 7.6341 4.0717 0.0098 34 1 3.4333 3.3272 -0.0014 35 1 2.7350 -3.2958 0.0152 36 1 0.0078 -2.1351 0.0014 37 1 0.9568 -4.8816 0.0126 38 1 -4.6335 -5.5322 0.2078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108306735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = 55.872108 kcal Electronic energy + Delta-G solvation = -26223.801197 eV Core-core repulsion = 22095.161183 eV Total energy + Delta-G solvation = -4128.640014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24748 -39.22161 -38.68768 -37.00838 -36.61945 -36.30553 -33.82084 -32.98162 -31.83487 -30.88654 -30.50668 -28.72029 -27.68855 -26.49204 -24.22290 -22.88385 -22.23825 -21.45664 -20.03534 -19.76526 -18.30774 -17.50329 -17.27190 -16.40867 -16.14025 -15.81585 -15.55836 -15.22548 -14.89760 -14.37311 -14.17118 -14.13835 -14.08903 -13.78865 -13.65149 -13.41709 -13.20522 -13.01335 -12.30731 -12.29743 -12.14739 -12.06022 -11.69333 -11.66188 -11.44814 -11.31969 -11.09490 -11.03851 -10.78959 -10.59921 -10.11946 -9.35476 -9.34022 -9.06217 -8.91430 -8.43974 -7.92235 -7.24567 -6.73161 -5.20948 0.96653 1.02224 1.11053 1.92093 2.15791 2.59101 2.63257 2.87742 2.97724 3.00676 3.27057 3.72891 3.78509 4.02511 4.21437 4.34779 4.63487 4.74743 4.91891 5.08832 5.12335 5.17067 5.23579 5.28949 5.46380 5.51427 5.57462 5.69167 5.74168 5.88847 6.04730 6.18552 6.26946 6.39558 6.52961 6.65079 6.93903 6.96635 7.30854 7.64067 7.77694 7.88901 8.22699 8.47035 8.62403 9.86349 10.17721 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.030681 B = 0.001856 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.387567 B =15085.621720 C =15977.465961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.163 3.837 3 N -0.291 5.291 4 N -0.406 5.406 5 C 0.206 3.794 6 C -0.153 4.153 7 C -0.081 4.081 8 C -0.142 4.142 9 C -0.012 4.012 10 Cl -0.072 7.072 11 C -0.133 4.133 12 C 0.549 3.451 13 O -0.539 6.539 14 C -0.428 4.428 15 C 0.322 3.678 16 N -0.439 5.439 17 N -0.570 5.570 18 C 0.546 3.454 19 O -0.569 6.569 20 C -0.525 4.525 21 H 0.081 0.919 22 C 0.086 3.914 23 N -0.754 5.754 24 Si 0.922 3.078 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.261 1.261 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.438 0.562 37 H 0.414 0.586 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 9.419 0.046 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.019 4.019 3 N -0.103 5.103 4 N -0.212 5.212 5 C 0.111 3.889 6 C -0.174 4.174 7 C -0.100 4.100 8 C -0.162 4.162 9 C -0.039 4.039 10 Cl -0.044 7.044 11 C -0.154 4.154 12 C 0.346 3.654 13 O -0.418 6.418 14 C -0.448 4.448 15 C 0.163 3.837 16 N -0.141 5.141 17 N -0.324 5.324 18 C 0.353 3.647 19 O -0.449 6.449 20 C -0.563 4.563 21 H 0.099 0.901 22 C -0.137 4.137 23 N -0.381 5.381 24 Si 0.746 3.254 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.185 1.185 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.188 0.812 36 H 0.286 0.714 37 H 0.254 0.746 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.492 10.704 0.044 16.451 hybrid contribution -0.149 -1.388 0.093 1.399 sum 12.344 9.315 0.138 15.465 Atomic orbital electron populations 1.20539 0.86100 1.05334 1.03724 1.23609 0.95789 0.89591 0.92941 1.76024 0.86308 1.23803 1.24208 1.46339 1.03303 1.05366 1.66148 1.17399 0.85444 0.88055 0.98010 1.21676 0.89931 1.03181 1.02642 1.20933 0.99074 0.91796 0.98185 1.20988 0.94897 0.96163 1.04107 1.20587 0.94293 0.84507 1.04513 1.98362 1.96366 1.12666 1.96965 1.20663 0.99761 0.90502 1.04477 1.18172 0.89062 0.81154 0.77038 1.90750 1.33549 1.63696 1.53837 1.19908 0.94093 0.91548 1.39255 1.21690 0.84847 0.95735 0.81407 1.43961 1.06070 1.02616 1.61501 1.46850 1.10206 0.91684 1.83676 1.18884 0.77061 0.91266 0.77452 1.90666 1.48897 1.49792 1.55549 1.20671 0.93260 0.88661 1.53709 0.90123 1.25764 0.95865 0.99671 0.92398 1.69973 1.01894 1.34040 1.32186 0.86095 0.78857 0.81242 0.79228 1.19380 1.20042 1.18482 0.88978 0.89164 0.89164 0.82216 0.84579 0.85024 0.83784 0.81224 0.71398 0.74611 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 8.59 36.01 0.31 -0.87 16 2 C 0.16 2.40 7.46 -79.88 -0.60 1.80 16 3 N -0.29 -4.70 11.48 35.02 0.40 -4.30 16 4 N -0.41 -6.83 3.74 -10.90 -0.04 -6.87 16 5 C 0.21 3.17 6.67 -83.64 -0.56 2.61 16 6 C -0.15 -2.13 9.36 -39.39 -0.37 -2.50 16 7 C -0.08 -0.88 10.04 -39.62 -0.40 -1.28 16 8 C -0.14 -1.50 9.83 -39.51 -0.39 -1.89 16 9 C -0.01 -0.14 6.32 -39.53 -0.25 -0.39 16 10 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.29 16 11 C -0.13 -1.85 9.41 -39.36 -0.37 -2.22 16 12 C 0.55 9.46 8.03 -12.77 -0.10 9.35 16 13 O -0.54 -9.84 15.16 4.95 0.07 -9.76 16 14 C -0.43 -6.47 6.30 -102.78 -0.65 -7.12 16 15 C 0.32 4.19 10.84 -16.15 -0.18 4.02 16 16 N -0.44 -6.55 6.24 31.04 0.19 -6.36 16 17 N -0.57 -9.67 6.29 30.19 0.19 -9.48 16 18 C 0.55 12.48 7.86 -12.99 -0.10 12.38 16 19 O -0.57 -15.04 14.88 5.20 0.08 -14.97 16 20 C -0.53 -12.12 9.53 -35.63 -0.34 -12.46 16 21 H 0.08 1.64 7.85 -52.49 -0.41 1.23 16 22 C 0.09 2.02 5.49 -17.36 -0.10 1.92 16 23 N -0.75 -19.32 11.85 55.55 0.66 -18.67 16 24 Si 0.92 17.10 29.56 -169.99 -5.03 12.07 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 26 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 27 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.06 7.44 -51.94 -0.39 0.68 16 30 H 0.09 1.07 7.44 -51.93 -0.39 0.68 16 31 H 0.16 2.40 5.37 -52.48 -0.28 2.12 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.14 2.02 7.64 -52.49 -0.40 1.62 16 35 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.44 6.80 3.89 -182.59 -0.71 6.09 16 37 H 0.41 5.59 8.67 -182.59 -1.58 4.01 16 38 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -30.98 354.14 -8.70 -39.68 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.99 Total: 12.23 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -4.08 Total: 3.37 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.40 Total: -45.68 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.15 Total: -24.73 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.98 -8.70 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108306735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.552 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds