Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47269 * 31.53589 * 3 2 1 5 5 C 1.36939 * 120.00192 * 273.31650 * 4 3 2 6 6 H 1.08005 * 120.00381 * 187.22401 * 5 4 3 7 7 C 1.38819 * 119.99868 * 7.21840 * 5 4 3 8 8 N 1.31618 * 119.99963 * 25.62468 * 7 5 4 9 9 Si 1.86803 * 120.00057 * 205.62203 * 7 5 4 10 10 H 1.48502 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46696 * 120.00163 * 9 7 5 12 12 H 1.48500 * 109.47108 * 240.00122 * 9 7 5 13 13 S 1.65601 * 120.00165 * 93.31463 * 4 3 2 14 14 O 1.42103 * 104.27635 * 153.92711 * 13 4 3 15 15 O 1.42099 * 104.27360 * 26.07335 * 13 4 3 16 16 C 1.81401 * 104.44943 * 270.00066 * 13 4 3 17 17 C 1.50700 * 109.46950 * 180.02562 * 16 13 4 18 18 C 1.38330 * 120.01758 * 89.99717 * 17 16 13 19 19 Cl 1.73599 * 120.00489 * 359.70456 * 18 17 16 20 20 C 1.38358 * 119.98773 * 179.97438 * 18 17 16 21 21 C 1.38215 * 120.01225 * 0.02562 * 20 18 17 22 22 C 1.38224 * 120.03075 * 0.02562 * 21 20 18 23 23 C 1.38330 * 120.01032 * 269.97493 * 17 16 13 24 24 Cl 1.73607 * 120.00833 * 0.02562 * 23 17 16 25 25 H 1.09004 * 109.46923 * 271.53523 * 3 2 1 26 26 H 1.08992 * 109.47017 * 151.53694 * 3 2 1 27 27 H 0.96997 * 119.99995 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46902 * 59.99644 * 16 13 4 29 29 H 1.09000 * 109.46653 * 299.99640 * 16 13 4 30 30 H 1.08003 * 119.99356 * 180.02562 * 20 18 17 31 31 H 1.08007 * 119.98705 * 180.02562 * 21 20 18 32 32 H 1.07997 * 119.99244 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1763 -0.7224 5 6 3.2610 -2.3652 -0.0629 6 1 3.7298 -3.1999 -0.5629 7 6 2.8250 -2.4975 1.2483 8 7 1.8490 -1.7370 1.6972 9 14 3.6233 -3.7549 2.3758 10 1 4.6886 -4.4776 1.6355 11 1 4.2178 -3.0623 3.5472 12 1 2.5985 -4.7237 2.8411 13 16 3.4511 -1.0691 -2.3365 14 8 4.4196 -2.0866 -2.5511 15 8 3.7717 0.3010 -2.5346 16 6 1.8947 -1.4857 -3.1701 17 6 2.0918 -1.4226 -4.6628 18 6 2.4958 -2.5496 -5.3557 19 17 2.7833 -4.0353 -4.5048 20 6 2.6761 -2.4912 -6.7262 21 6 2.4531 -1.3068 -7.4029 22 6 2.0505 -0.1800 -6.7111 23 6 1.8684 -0.2377 -5.3407 24 17 1.3615 1.1773 -4.4720 25 1 2.9714 -0.0267 1.0273 26 1 2.9709 0.9042 -0.4897 27 1 1.5440 -1.8297 2.6133 28 1 1.1229 -0.7750 -2.8747 29 1 1.5890 -2.4928 -2.8865 30 1 2.9911 -3.3712 -7.2674 31 1 2.5936 -1.2618 -8.4729 32 1 1.8768 0.7452 -7.2404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172095908.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -13.250855 kcal Electronic energy + Delta-G solvation = -24171.508082 eV Core-core repulsion = 20312.064848 eV Total energy + Delta-G solvation = -3859.443234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 347.989 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.47392 -36.84949 -36.53479 -36.03712 -35.78927 -34.66034 -34.50344 -32.79431 -31.90073 -30.57299 -27.62093 -26.98397 -24.24451 -22.78203 -21.75192 -18.73292 -18.06004 -17.20658 -16.98193 -16.35275 -16.11708 -15.58768 -15.20163 -14.76300 -14.57708 -14.24381 -13.76373 -13.71074 -13.26933 -13.01381 -12.47391 -12.34164 -12.07424 -12.03292 -11.89856 -11.59579 -11.50767 -11.43540 -11.12903 -10.93684 -10.87702 -10.77153 -10.67800 -10.64398 -10.56532 -10.35164 -10.23854 -10.13050 -9.81559 -8.72594 -8.65763 -8.37507 -6.93910 -4.17388 0.89200 1.00841 1.52792 2.04849 2.46283 2.96716 3.05977 3.13908 3.45870 3.47608 3.85247 4.03317 4.26471 4.42995 4.60713 4.78969 4.82017 5.02967 5.19128 5.25478 5.33294 5.40272 5.48684 5.80765 6.01042 6.07352 6.15008 6.23694 6.30314 6.41125 6.57629 6.76453 7.01888 7.92782 8.28626 8.72521 8.75872 10.04361 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.005280 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.900176 B = 5302.253993 C = 6499.743268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.241 3.759 3 C 0.220 3.780 4 N -0.788 5.788 5 C -0.229 4.229 6 H 0.132 0.868 7 C 0.028 3.972 8 N -0.825 5.825 9 Si 0.936 3.064 10 H -0.257 1.257 11 H -0.271 1.271 12 H -0.277 1.277 13 S 2.454 3.546 14 O -0.962 6.962 15 O -0.981 6.981 16 C -0.634 4.634 17 C -0.042 4.042 18 C -0.030 4.030 19 Cl -0.040 7.040 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.030 4.030 24 Cl -0.044 7.044 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 0.242 -9.908 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.610 5.610 5 C -0.378 4.378 6 H 0.149 0.851 7 C -0.185 4.185 8 N -0.465 5.465 9 Si 0.760 3.240 10 H -0.181 1.181 11 H -0.196 1.196 12 H -0.203 1.203 13 S 2.551 3.449 14 O -0.951 6.951 15 O -0.970 6.970 16 C -0.747 4.747 17 C -0.045 4.045 18 C -0.057 4.057 19 Cl -0.011 7.011 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.058 4.058 24 Cl -0.015 7.015 25 H 0.149 0.851 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.361 0.630 -10.295 10.321 hybrid contribution -0.428 -0.876 0.707 1.205 sum -0.067 -0.246 -9.588 9.591 Atomic orbital electron populations 1.80886 1.13589 1.10340 1.10655 1.29536 0.95610 0.91278 0.91393 1.19029 0.81138 0.89106 1.01653 1.55522 1.70299 1.14332 1.20825 1.20414 1.29347 0.93814 0.94271 0.85082 1.25699 0.94937 0.98769 0.99101 1.69950 1.20596 1.37431 1.18478 0.85677 0.79557 0.79373 0.79380 1.18092 1.19644 1.20274 1.15340 0.80803 0.74523 0.74235 1.93390 1.58305 1.59007 1.84436 1.93370 1.84368 1.34311 1.84954 1.30568 1.31595 1.12401 1.00175 1.19014 0.99315 0.91200 0.94973 1.20752 1.03818 0.88447 0.92714 1.98401 1.94044 1.31413 1.77261 1.21117 1.00095 0.99327 0.91890 1.20998 0.99981 0.91668 1.00235 1.21110 0.99741 0.99826 0.91768 1.20746 1.03508 0.88853 0.92660 1.98395 1.88947 1.37653 1.76459 0.85065 0.87613 0.90434 0.85797 0.85109 0.84270 0.84231 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.15 0.78 -10.22 16 2 C 0.24 5.25 13.29 -20.76 -0.28 4.97 16 3 C 0.22 4.44 5.43 -6.83 -0.04 4.40 16 4 N -0.79 -17.21 2.81 -62.77 -0.18 -17.39 16 5 C -0.23 -5.12 9.42 -15.06 -0.14 -5.26 16 6 H 0.13 2.93 7.17 -52.48 -0.38 2.55 16 7 C 0.03 0.60 4.90 -17.43 -0.09 0.51 16 8 N -0.82 -18.22 8.99 55.49 0.50 -17.72 16 9 Si 0.94 17.06 29.62 -169.99 -5.04 12.02 16 10 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 11 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 12 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 13 S 2.45 53.93 5.37 -107.50 -0.58 53.35 16 14 O -0.96 -22.91 16.45 -57.54 -0.95 -23.85 16 15 O -0.98 -22.32 16.26 -57.54 -0.94 -23.25 16 16 C -0.63 -12.69 5.51 36.01 0.20 -12.50 16 17 C -0.04 -0.77 5.15 -104.55 -0.54 -1.30 16 18 C -0.03 -0.49 6.31 -39.50 -0.25 -0.74 16 19 Cl -0.04 -0.69 26.98 -51.86 -1.40 -2.09 16 20 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 21 C -0.11 -1.26 10.04 -39.60 -0.40 -1.66 16 22 C -0.11 -1.39 9.83 -39.54 -0.39 -1.78 16 23 C -0.03 -0.50 6.31 -39.50 -0.25 -0.75 16 24 Cl -0.04 -0.75 27.01 -51.86 -1.40 -2.15 16 25 H 0.13 2.54 6.47 -51.93 -0.34 2.20 16 26 H 0.11 1.92 6.84 -51.93 -0.36 1.56 16 27 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 28 H 0.12 2.50 6.91 -51.92 -0.36 2.14 16 29 H 0.13 2.60 6.91 -51.92 -0.36 2.24 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -27.77 326.17 -9.02 -36.79 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.19 Total: 5.49 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.55 Total: -15.88 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 1.10 Total: -45.34 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.88 Total: -47.11 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.04 Total: 12.02 kcal Atomic # 16 Polarization: 53.93 SS G_CDS: -0.58 Total: 53.35 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -2.80 Total: -4.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.77 -9.02 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172095908.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.536 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds