Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46896 * 2 1 4 4 C 1.36865 * 127.10472 * 84.87721 * 3 2 1 5 5 C 1.47940 * 126.50503 * 359.97438 * 4 3 2 6 6 C 1.39536 * 120.14168 * 49.55613 * 5 4 3 7 7 C 1.37950 * 119.85819 * 179.97438 * 6 5 4 8 8 C 1.38365 * 120.14289 * 0.02562 * 7 6 5 9 9 C 1.38329 * 120.28189 * 359.68966 * 8 7 6 10 10 C 1.37997 * 120.13544 * 0.58803 * 9 8 7 11 11 C 1.50703 * 120.07406 * 179.70532 * 10 9 8 12 12 N 1.31440 * 106.98120 * 179.73808 * 4 3 2 13 13 N 1.28540 * 109.71970 * 0.26022 * 12 4 3 14 14 C 1.30615 * 110.05959 * 0.02562 * 13 12 4 15 15 S 1.76198 * 126.27656 * 179.97438 * 14 13 12 16 16 O 1.42108 * 104.27436 * 206.04621 * 15 14 13 17 17 O 1.42094 * 104.28149 * 333.90301 * 15 14 13 18 18 C 1.81401 * 104.44936 * 89.97607 * 15 14 13 19 19 C 1.53001 * 109.47206 * 179.97438 * 18 15 14 20 20 C 1.50697 * 109.47114 * 179.97438 * 19 18 15 21 21 H 1.07997 * 120.00177 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00159 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00023 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47138 * 59.99805 * 24 22 20 26 26 H 1.48499 * 109.47190 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46935 * 299.99877 * 24 22 20 28 28 H 1.09003 * 109.46795 * 60.00427 * 1 2 3 29 29 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47854 * 300.00618 * 1 2 3 31 31 H 1.08993 * 109.47557 * 239.99700 * 2 1 3 32 32 H 1.09004 * 109.47150 * 119.99166 * 2 1 3 33 33 H 1.08000 * 120.06887 * 359.97438 * 6 5 4 34 34 H 1.08005 * 119.93005 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.86294 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.93458 * 180.29671 * 9 8 7 37 37 H 1.08996 * 109.46913 * 269.73166 * 11 10 9 38 38 H 1.08996 * 109.47334 * 149.72630 * 11 10 9 39 39 H 1.09004 * 109.46749 * 29.72867 * 11 10 9 40 40 H 1.08999 * 109.47254 * 299.99831 * 18 15 14 41 41 H 1.09006 * 109.47083 * 59.99710 * 18 15 14 42 42 H 1.08999 * 109.47311 * 300.00329 * 19 18 15 43 43 H 1.09006 * 109.46901 * 60.00132 * 19 18 15 44 44 H 0.97000 * 120.00154 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2016 2.1922 1.0872 5 6 1.9425 1.8410 2.5007 6 6 2.4501 0.6550 3.0325 7 6 2.2054 0.3336 4.3515 8 6 1.4579 1.1841 5.1467 9 6 0.9568 2.3642 4.6273 10 6 1.1897 2.6944 3.3078 11 6 0.6375 3.9772 2.7415 12 7 2.6564 3.3404 0.6373 13 7 2.7597 3.2943 -0.6431 14 6 2.3796 2.1241 -1.0814 15 16 2.3481 1.6007 -2.7636 16 8 1.3445 0.5952 -2.7989 17 8 2.2043 2.8056 -3.5029 18 6 3.9869 0.8745 -3.0424 19 6 4.0850 0.3761 -4.4856 20 6 5.4466 -0.2266 -4.7174 21 1 6.1696 -0.2520 -3.9155 22 6 5.7695 -0.7455 -5.9534 23 7 4.8893 -0.7142 -6.9301 24 14 7.4570 -1.4932 -6.2406 25 1 7.6588 -2.6323 -5.3093 26 1 7.5523 -1.9769 -7.6414 27 1 8.5014 -0.4655 -5.9992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 3.0333 -0.0099 2.4126 34 1 2.5974 -0.5843 4.7641 35 1 1.2687 0.9278 6.1787 36 1 0.3781 3.0262 5.2543 37 1 -0.3534 3.7940 2.3260 38 1 1.2992 4.3421 1.9560 39 1 0.5673 4.7232 3.5332 40 1 4.7535 1.6289 -2.8653 41 1 4.1350 0.0385 -2.3588 42 1 3.3184 -0.3783 -4.6624 43 1 3.9368 1.2119 -5.1695 44 1 5.1163 -1.0796 -7.7995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195568049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = 23.965704 kcal Electronic energy + Delta-G solvation = -28560.115196 eV Core-core repulsion = 24606.082850 eV Total energy + Delta-G solvation = -3954.032346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.23246 -39.65144 -37.10875 -35.87950 -35.69161 -34.04133 -33.53608 -32.44028 -31.32242 -30.88509 -29.80064 -27.32724 -25.78247 -24.95636 -23.46697 -23.25673 -22.24233 -21.49987 -20.74893 -18.96912 -17.95542 -17.13533 -16.83744 -16.67316 -16.15007 -15.92447 -15.53169 -15.39856 -15.17052 -14.61986 -14.59508 -14.20976 -14.05526 -13.65692 -13.55041 -13.42141 -12.71760 -12.62055 -12.57455 -12.49562 -12.02264 -11.97478 -11.86378 -11.84448 -11.69243 -11.61045 -11.38137 -11.28553 -11.14177 -11.09627 -10.77765 -10.55168 -10.50591 -10.46325 -10.14867 -9.82639 -9.35212 -9.23638 -8.88560 -8.57479 -6.20153 -4.26687 0.13783 0.50215 0.91968 1.27880 2.09745 2.44889 2.97011 3.23558 3.26860 3.28971 3.30554 3.73932 3.99873 4.10942 4.31196 4.36417 4.38047 4.43133 4.58152 4.66489 4.86007 4.88637 4.92151 5.06091 5.15245 5.15765 5.27237 5.35121 5.38095 5.41714 5.45583 5.49452 5.50640 5.56284 5.75228 5.89971 5.92914 5.98255 6.01943 6.14880 6.25959 6.37570 6.49844 7.16178 7.21941 7.72167 8.05475 8.26718 8.76069 9.38627 10.90628 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002762 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.141068 B =10136.826711 C =10694.004925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 N -0.417 5.417 4 C 0.243 3.757 5 C -0.027 4.027 6 C -0.092 4.092 7 C -0.124 4.124 8 C -0.098 4.098 9 C -0.121 4.121 10 C -0.036 4.036 11 C -0.136 4.136 12 N -0.277 5.277 13 N -0.192 5.192 14 C -0.347 4.347 15 S 2.491 3.509 16 O -0.930 6.930 17 O -0.907 6.907 18 C -0.552 4.552 19 C 0.028 3.972 20 C -0.523 4.523 21 H 0.063 0.937 22 C 0.061 3.939 23 N -0.888 5.888 24 Si 0.902 3.098 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 0.222 23.886 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.039 4.039 3 N -0.105 5.105 4 C -0.022 4.022 5 C -0.030 4.030 6 C -0.112 4.112 7 C -0.142 4.142 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.038 4.038 11 C -0.192 4.192 12 N -0.122 5.122 13 N -0.037 5.037 14 C -0.688 4.688 15 S 2.664 3.336 16 O -0.926 6.926 17 O -0.903 6.903 18 C -0.687 4.687 19 C -0.011 4.011 20 C -0.563 4.563 21 H 0.081 0.919 22 C -0.143 4.143 23 N -0.526 5.526 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.514 1.687 23.182 25.115 hybrid contribution 1.035 -1.694 0.534 2.056 sum -8.479 -0.007 23.716 25.186 Atomic orbital electron populations 1.22111 0.92436 1.04252 1.03551 1.22459 0.97752 0.77453 1.06267 1.46631 1.45377 1.13827 1.04694 1.23283 1.00621 0.88405 0.89877 1.17356 1.02064 0.96609 0.86974 1.21201 0.98646 0.95251 0.96093 1.21041 0.99511 1.00311 0.93319 1.21331 0.96389 0.93917 0.99998 1.21023 1.00973 0.97552 0.94331 1.19956 0.94745 0.95776 0.93282 1.21101 1.01766 0.93694 1.02658 1.74527 1.17398 1.17376 1.02922 1.74210 1.11869 1.14496 1.03092 1.38973 1.14741 0.97864 1.17184 1.06875 0.80087 0.75679 0.70919 1.93541 1.55900 1.59226 1.83967 1.93590 1.86317 1.45265 1.65121 1.30186 1.15727 1.11574 1.11247 1.19083 1.00290 0.97731 0.83998 1.20908 0.97976 1.40022 0.97388 0.91878 1.25049 0.97644 0.95714 0.95867 1.69932 1.34679 1.45008 1.02976 0.86501 0.83682 0.79544 0.77407 1.20054 1.20994 1.19942 0.90216 0.89480 0.92252 0.86393 0.87977 0.85572 0.85159 0.85401 0.85151 0.91131 0.88871 0.90880 0.84876 0.85784 0.94350 0.94192 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.14 37.16 0.38 -1.30 16 2 C 0.08 0.89 5.92 -4.04 -0.02 0.86 16 3 N -0.42 -5.88 2.80 -114.56 -0.32 -6.20 16 4 C 0.24 3.47 6.76 -154.24 -1.04 2.43 16 5 C -0.03 -0.31 5.66 -104.97 -0.59 -0.90 16 6 C -0.09 -0.82 8.69 -39.20 -0.34 -1.16 16 7 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 8 C -0.10 -0.64 10.04 -39.50 -0.40 -1.03 16 9 C -0.12 -0.91 9.69 -39.64 -0.38 -1.30 16 10 C -0.04 -0.36 5.91 -104.24 -0.62 -0.98 16 11 C -0.14 -1.35 9.62 36.01 0.35 -1.01 16 12 N -0.28 -4.72 10.24 32.51 0.33 -4.39 16 13 N -0.19 -3.57 12.18 30.48 0.37 -3.20 16 14 C -0.35 -5.85 7.69 -89.33 -0.69 -6.54 16 15 S 2.49 44.62 5.15 -107.50 -0.55 44.07 16 16 O -0.93 -16.68 15.01 -57.54 -0.86 -17.54 16 17 O -0.91 -19.29 17.94 -57.54 -1.03 -20.32 16 18 C -0.55 -10.06 5.92 37.16 0.22 -9.84 16 19 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 20 C -0.52 -13.80 9.11 -34.44 -0.31 -14.12 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 24 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.98 7.51 -51.93 -0.39 0.59 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.27 6.59 -51.93 -0.34 0.93 16 32 H 0.10 0.79 5.86 -51.93 -0.30 0.49 16 33 H 0.13 0.98 6.95 -52.49 -0.37 0.61 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.18 5.60 -51.93 -0.29 0.89 16 39 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.13 2.28 8.14 -51.92 -0.42 1.85 16 41 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -34.68 380.93 -10.58 -45.26 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.88 Total: -0.20 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -4.09 Total: -34.06 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.12 Total: -38.47 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.90 Total: -37.87 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -0.55 Total: 44.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.68 -10.58 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195568049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.228 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds