Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47154 * 2 1 4 4 C 1.38864 * 119.99936 * 274.99736 * 3 2 1 5 5 C 1.39564 * 119.84351 * 115.13707 * 4 3 2 6 6 C 1.36342 * 120.15967 * 179.71719 * 5 4 3 7 7 C 1.40890 * 119.83468 * 0.56118 * 6 5 4 8 8 C 1.41136 * 120.15379 * 179.69743 * 7 6 5 9 9 H 1.08001 * 120.00092 * 155.16354 * 8 7 6 10 10 C 1.39869 * 119.99975 * 335.16007 * 8 7 6 11 11 N 1.30895 * 119.99865 * 338.97777 * 10 8 7 12 12 Si 1.86792 * 119.99831 * 158.98077 * 10 8 7 13 13 H 1.48508 * 109.47518 * 94.98185 * 12 10 8 14 14 H 1.48503 * 109.47179 * 214.97816 * 12 10 8 15 15 H 1.48502 * 109.47430 * 334.98109 * 12 10 8 16 16 C 1.40882 * 119.68812 * 359.71511 * 7 6 5 17 17 C 1.36343 * 119.84092 * 0.02562 * 16 7 6 18 18 S 1.65597 * 120.00460 * 94.99599 * 3 2 1 19 19 O 1.42097 * 106.40582 * 158.17752 * 18 3 2 20 20 O 1.42102 * 106.40016 * 25.25780 * 18 3 2 21 21 C 1.76200 * 107.21937 * 271.71916 * 18 3 2 22 22 C 1.38247 * 119.97460 * 90.10530 * 21 18 3 23 23 C 1.38201 * 120.02308 * 180.27849 * 22 21 18 24 24 C 1.38455 * 119.97357 * 359.51063 * 23 22 21 25 25 F 1.35098 * 120.02300 * 180.20763 * 24 23 22 26 26 C 1.38458 * 119.94982 * 0.49048 * 24 23 22 27 27 C 1.38190 * 119.97446 * 359.74357 * 26 24 23 28 28 H 1.09000 * 109.46866 * 60.00426 * 1 2 3 29 29 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47637 * 300.00830 * 1 2 3 31 31 H 1.09000 * 109.47218 * 239.99506 * 2 1 3 32 32 H 1.09000 * 109.46866 * 119.99574 * 2 1 3 33 33 H 1.08003 * 119.91918 * 359.97438 * 5 4 3 34 34 H 1.07995 * 120.08483 * 180.27756 * 6 5 4 35 35 H 0.97003 * 120.00073 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.08223 * 179.97438 * 16 7 6 37 37 H 1.07993 * 119.91952 * 179.97438 * 17 16 7 38 38 H 1.07997 * 119.98570 * 0.02562 * 22 21 18 39 39 H 1.08000 * 120.01013 * 179.72210 * 23 22 21 40 40 H 1.07996 * 120.01138 * 179.72291 * 26 24 23 41 41 H 1.08003 * 119.98907 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1510 2.0707 -1.1980 5 6 1.3576 3.1919 -1.4456 6 6 1.4866 3.8771 -2.6173 7 6 2.4152 3.4437 -3.5841 8 6 2.5498 4.1442 -4.8020 9 1 3.4766 4.0943 -5.3541 10 6 1.4827 4.9031 -5.2938 11 7 0.2631 4.6583 -4.8866 12 14 1.7983 6.2657 -6.5319 13 1 1.5969 5.7418 -7.9068 14 1 0.8550 7.3860 -6.2861 15 1 3.1937 6.7527 -6.3872 16 6 3.2086 2.3077 -3.3297 17 6 3.0727 1.6353 -2.1514 18 16 2.4121 2.1203 1.4286 19 8 3.2968 3.1827 1.1003 20 8 2.7486 1.0817 2.3383 21 6 0.9436 2.8698 2.0502 22 6 0.1064 2.1577 2.8889 23 6 -1.0486 2.7426 3.3724 24 6 -1.3619 4.0456 3.0248 25 9 -2.4886 4.6198 3.5003 26 6 -0.5227 4.7578 2.1848 27 6 0.6292 4.1693 1.6986 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.6427 3.5199 -0.7056 34 1 0.8752 4.7471 -2.8057 35 1 -0.4770 5.1843 -5.2279 36 1 3.9222 1.9697 -4.0665 37 1 3.6800 0.7641 -1.9552 38 1 0.3530 1.1426 3.1629 39 1 -1.7047 2.1845 4.0239 40 1 -0.7684 5.7727 1.9094 41 1 1.2842 4.7247 1.0437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224914149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = -69.625762 kcal Electronic energy + Delta-G solvation = -28675.380461 eV Core-core repulsion = 24561.536629 eV Total energy + Delta-G solvation = -4113.843832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.24630 -39.08143 -38.30118 -37.02309 -35.80439 -35.53714 -33.47103 -31.44461 -30.93999 -30.63395 -29.58851 -28.51825 -24.94937 -23.36457 -23.32836 -22.72243 -21.10189 -20.85054 -18.86305 -18.21507 -17.62958 -17.43987 -16.95647 -16.74066 -16.07996 -15.89490 -15.35622 -14.84914 -14.62704 -14.12874 -14.02915 -13.85007 -13.68068 -13.50117 -13.35169 -13.05543 -12.86655 -12.62161 -12.31985 -12.15283 -11.93945 -11.83061 -11.73952 -11.63489 -11.34229 -11.22359 -11.17801 -11.00395 -10.88062 -10.75274 -10.59362 -9.96592 -9.73409 -9.35422 -9.32572 -9.20608 -8.79399 -7.69560 -7.31695 -6.93471 -4.45194 0.41197 0.73967 0.98604 2.57261 2.97740 3.00790 3.01178 3.01863 3.10024 3.39694 3.83002 3.89829 4.01772 4.32000 4.41881 4.62248 4.66229 5.00450 5.15052 5.20189 5.43328 5.45866 5.48988 5.60667 5.63985 5.77787 5.81053 5.89855 5.90572 6.04136 6.07377 6.18351 6.35183 6.47710 6.56723 6.70007 6.92051 6.97037 7.11099 7.19258 7.46410 7.85173 7.89646 7.95486 8.13908 8.47425 8.73580 8.83525 10.00376 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003889 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.153044 B = 7197.359350 C = 8613.363288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 N -0.915 5.915 4 C -0.009 4.009 5 C -0.099 4.099 6 C -0.157 4.157 7 C 0.117 3.883 8 C -0.453 4.453 9 H 0.082 0.918 10 C 0.078 3.922 11 N -0.782 5.782 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.258 1.258 16 C -0.218 4.218 17 C -0.071 4.071 18 S 2.681 3.319 19 O -0.940 6.940 20 O -0.970 6.970 21 C -0.685 4.685 22 C 0.006 3.994 23 C -0.179 4.179 24 C 0.148 3.852 25 F -0.134 7.134 26 C -0.174 4.174 27 C 0.016 3.984 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.283 0.717 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -3.641 10.999 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.747 5.747 4 C -0.103 4.103 5 C -0.120 4.120 6 C -0.177 4.177 7 C 0.114 3.886 8 C -0.482 4.482 9 H 0.100 0.900 10 C -0.142 4.142 11 N -0.406 5.406 12 Si 0.730 3.270 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.238 4.238 17 C -0.092 4.092 18 S 2.773 3.227 19 O -0.930 6.930 20 O -0.960 6.960 21 C -0.769 4.769 22 C -0.013 4.013 23 C -0.198 4.198 24 C 0.129 3.871 25 F -0.112 7.112 26 C -0.193 4.193 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.697 -3.560 11.449 12.547 hybrid contribution -1.249 0.938 -0.516 1.645 sum -4.945 -2.621 10.934 12.283 Atomic orbital electron populations 1.22255 0.96482 1.01846 1.02734 1.21467 0.94108 0.82156 1.03722 1.54390 1.80053 1.20973 1.19263 1.16550 1.05152 1.00025 0.88529 1.20523 0.97202 0.96664 0.97604 1.20809 1.02981 1.01368 0.92501 1.17663 0.89679 0.89104 0.92165 1.19617 0.99518 1.24074 1.04968 0.89999 1.25954 0.94321 0.96928 0.96984 1.69866 0.99652 1.33973 1.37115 0.86327 0.79997 0.80427 0.80251 1.19472 1.19919 1.18170 1.20621 1.06550 0.98759 0.97894 1.20296 0.95973 0.98716 0.94203 1.02570 0.73920 0.73594 0.72643 1.93591 1.60353 1.55990 1.83094 1.93519 1.82169 1.56855 1.63488 1.31370 1.25145 1.06523 1.13900 1.20767 0.90734 0.99205 0.90573 1.21210 0.99769 0.94275 1.04578 1.17972 0.82902 0.91944 0.94300 1.91529 1.48789 1.84641 1.86276 1.21304 0.95905 1.01894 1.00245 1.20945 0.94218 0.92202 0.92963 0.91310 0.91827 0.93225 0.89716 0.89753 0.89431 0.86522 0.90606 0.88461 0.88914 0.83450 0.83953 0.83682 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.22 37.16 0.38 -1.83 16 2 C 0.11 1.55 6.32 -4.04 -0.03 1.53 16 3 N -0.92 -15.76 2.79 -58.50 -0.16 -15.93 16 4 C -0.01 -0.18 4.74 -83.69 -0.40 -0.58 16 5 C -0.10 -2.14 9.69 -39.77 -0.39 -2.52 16 6 C -0.16 -3.79 8.64 -39.26 -0.34 -4.13 16 7 C 0.12 2.92 5.56 -106.79 -0.59 2.33 16 8 C -0.45 -11.29 9.01 -37.87 -0.34 -11.63 16 9 H 0.08 1.96 7.93 -52.49 -0.42 1.54 16 10 C 0.08 1.83 5.05 -17.34 -0.09 1.74 16 11 N -0.78 -18.91 11.17 55.54 0.62 -18.28 16 12 Si 0.91 17.58 29.61 -169.99 -5.03 12.55 16 13 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 14 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 15 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 16 C -0.22 -5.02 9.74 -39.26 -0.38 -5.40 16 17 C -0.07 -1.50 9.46 -39.77 -0.38 -1.87 16 18 S 2.68 45.84 5.49 -107.50 -0.59 45.25 16 19 O -0.94 -19.14 16.47 -57.17 -0.94 -20.08 16 20 O -0.97 -16.90 15.87 -57.17 -0.91 -17.81 16 21 C -0.68 -9.99 5.93 -39.57 -0.23 -10.23 16 22 C 0.01 0.08 8.35 -39.59 -0.33 -0.25 16 23 C -0.18 -1.99 10.03 -39.52 -0.40 -2.39 16 24 C 0.15 1.80 7.30 -39.42 -0.29 1.51 16 25 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 26 C -0.17 -2.18 10.03 -39.52 -0.40 -2.58 16 27 C 0.02 0.23 7.91 -39.60 -0.31 -0.09 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.58 6.93 -51.93 -0.36 0.22 16 31 H 0.08 1.16 7.77 -51.93 -0.40 0.76 16 32 H 0.08 1.06 6.93 -51.93 -0.36 0.70 16 33 H 0.09 1.68 6.01 -52.48 -0.32 1.37 16 34 H 0.12 2.89 6.30 -52.49 -0.33 2.56 16 35 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 36 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.15 2.25 7.37 -52.48 -0.39 1.86 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -28.64 361.64 -10.68 -39.31 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.64 Total: 7.48 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: -4.51 Total: -36.37 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.46 Total: -34.21 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.85 Total: -37.89 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: 45.84 SS G_CDS: -0.59 Total: 45.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.64 -10.68 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224914149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.312 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds