Wall clock time and date at job start Tue Mar 31 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99351 * 2 1 4 4 C 1.38813 * 120.02398 * 0.02654 * 3 2 1 5 5 C 1.38164 * 120.09667 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12758 * 359.69553 * 5 4 3 7 7 C 1.38931 * 120.03373 * 0.55950 * 6 5 4 8 8 N 1.39669 * 120.04719 * 179.74538 * 7 6 5 9 9 C 1.46500 * 120.00276 * 119.68752 * 8 7 6 10 10 C 1.50696 * 109.47036 * 275.00191 * 9 8 7 11 11 H 1.07998 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99653 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00556 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99671 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47100 * 60.00021 * 14 12 10 16 16 H 1.48501 * 109.46697 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47046 * 299.99879 * 14 12 10 18 18 S 1.65599 * 119.99641 * 299.68615 * 8 7 6 19 19 O 1.42107 * 106.39945 * 150.87065 * 18 8 7 20 20 O 1.42096 * 106.40574 * 17.95244 * 18 8 7 21 21 C 1.76202 * 107.22055 * 264.41038 * 18 8 7 22 22 C 1.38680 * 120.41764 * 270.25904 * 21 18 8 23 23 C 1.38633 * 118.41744 * 180.24022 * 22 21 18 24 24 C 1.38225 * 119.16111 * 359.74869 * 23 22 21 25 25 N 1.31852 * 120.76511 * 359.97438 * 24 23 22 26 26 C 1.31886 * 121.72658 * 0.02562 * 25 24 23 27 27 C 1.38574 * 120.01424 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46960 * 299.99328 * 1 2 3 29 29 H 1.08999 * 109.47333 * 59.99933 * 1 2 3 30 30 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.94753 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.94030 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.98407 * 180.27292 * 6 5 4 34 34 H 1.09001 * 109.46544 * 34.99950 * 9 8 7 35 35 H 1.08995 * 109.47121 * 154.99579 * 9 8 7 36 36 H 0.96993 * 119.99871 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.78739 * 359.96213 * 22 21 18 38 38 H 1.07994 * 120.41420 * 179.72511 * 23 22 21 39 39 H 1.08004 * 119.61572 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.61498 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.06137 * 0.03988 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2902 2.3754 0.0006 5 6 1.9158 3.6073 0.0000 6 6 3.2952 3.6846 0.0053 7 6 4.0568 2.5226 -0.0006 8 7 5.4513 2.6005 -0.0007 9 6 6.2181 2.0086 1.0984 10 6 6.3073 2.9930 2.2359 11 1 5.8400 3.9627 2.1486 12 6 6.9856 2.6556 3.3879 13 7 7.5543 1.4746 3.4943 14 14 7.0968 3.8762 4.7977 15 1 5.7298 4.2114 5.2712 16 1 7.8729 3.2756 5.9122 17 1 7.7755 5.1115 4.3304 18 16 6.2379 3.3619 -1.2432 19 8 7.4428 3.8809 -0.6970 20 8 5.2689 4.1705 -1.8960 21 6 6.7106 2.1199 -2.4002 22 6 7.9369 1.4826 -2.2845 23 6 8.2687 0.5154 -3.2206 24 6 7.3705 0.2167 -4.2278 25 7 6.2106 0.8392 -4.3037 26 6 5.8617 1.7644 -3.4309 27 6 3.4297 1.2840 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2117 2.3182 0.0006 32 1 1.3253 4.5117 0.0000 33 1 3.7817 4.6488 0.0093 34 1 5.7205 1.1014 1.4411 35 1 7.2215 1.7633 0.7505 36 1 8.0317 1.2375 4.3046 37 1 8.6190 1.7371 -1.4868 38 1 9.2172 0.0021 -3.1637 39 1 7.6213 -0.5359 -4.9608 40 1 4.9033 2.2530 -3.5256 41 1 4.0192 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225513119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:06 Heat of formation + Delta-G solvation = -32.574832 kcal Electronic energy + Delta-G solvation = -28760.175639 eV Core-core repulsion = 24733.284328 eV Total energy + Delta-G solvation = -4026.891311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.07633 -39.91839 -37.82655 -36.81226 -35.40935 -35.06604 -32.65558 -32.57777 -31.49402 -30.42722 -29.20957 -27.19702 -26.67248 -24.01828 -23.72909 -23.15588 -22.00695 -21.55391 -19.10886 -18.29157 -17.56184 -16.85128 -16.54324 -16.53507 -16.23976 -15.92890 -15.62046 -15.52603 -15.41348 -14.52402 -14.38617 -14.06199 -13.91909 -13.68532 -13.31699 -13.21424 -12.71290 -12.57335 -12.45472 -12.18692 -12.08352 -11.69787 -11.57349 -11.50591 -11.29788 -11.02471 -10.96308 -10.88496 -10.73014 -10.59785 -10.23260 -10.13631 -10.03138 -9.59625 -9.49981 -8.94602 -8.50573 -8.12561 -7.78326 -6.12755 -4.16724 0.46697 0.79127 1.13860 1.65220 1.78999 3.19009 3.32461 3.35172 3.39889 3.46934 3.67589 4.05172 4.09269 4.30868 4.40570 4.49468 4.73887 4.87661 4.97870 5.09512 5.15474 5.17693 5.20995 5.23350 5.28998 5.44639 5.52981 5.56881 5.65612 5.78468 5.83827 5.91651 6.02642 6.21384 6.47036 6.52502 6.69662 6.76772 6.94436 7.10601 7.16348 7.50344 7.66641 7.70301 7.84218 8.07332 8.84339 9.48377 10.96070 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.006901 B = 0.006083 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4056.537440 B = 4602.204299 C = 7089.960862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.217 4.217 5 C -0.071 4.071 6 C -0.139 4.139 7 C 0.208 3.792 8 N -0.936 5.936 9 C 0.254 3.746 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.273 1.273 18 S 2.687 3.313 19 O -0.929 6.929 20 O -0.959 6.959 21 C -0.730 4.730 22 C 0.030 3.970 23 C -0.195 4.195 24 C 0.143 3.857 25 N -0.500 5.500 26 C 0.199 3.801 27 C -0.151 4.151 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -3.197 -11.499 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.237 4.237 5 C -0.090 4.090 6 C -0.160 4.160 7 C 0.113 3.887 8 N -0.768 5.768 9 C 0.135 3.865 10 C -0.566 4.566 11 H 0.082 0.918 12 C -0.138 4.138 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.198 1.198 18 S 2.776 3.224 19 O -0.919 6.919 20 O -0.949 6.949 21 C -0.816 4.816 22 C 0.003 3.997 23 C -0.215 4.215 24 C -0.013 4.013 25 N -0.209 5.209 26 C 0.041 3.959 27 C -0.173 4.173 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.882 -2.877 -12.141 14.758 hybrid contribution 0.631 0.076 1.371 1.511 sum -7.251 -2.802 -10.770 13.282 Atomic orbital electron populations 1.22994 0.78878 1.03481 1.01211 1.86064 1.20961 1.27156 1.89067 1.18691 0.91711 0.83985 0.97166 1.21128 0.99580 0.92358 1.10588 1.20698 0.93887 0.96879 0.97558 1.21291 0.93878 0.98090 1.02791 1.16948 0.82575 0.92177 0.96994 1.55487 1.10777 1.74767 1.35728 1.19337 0.89895 0.94726 0.82560 1.21339 1.34540 1.01337 0.99427 0.91823 1.24892 0.94921 0.95490 0.98460 1.69897 1.35153 1.20082 1.28316 0.86546 0.78310 0.81377 0.81226 1.20077 1.21150 1.19849 1.02420 0.73818 0.73750 0.72436 1.93632 1.45998 1.75319 1.76978 1.93550 1.61075 1.64457 1.75828 1.32373 1.05467 1.24775 1.18997 1.21510 0.93013 0.89332 0.95853 1.22267 1.02116 1.00139 0.97016 1.23109 0.88498 0.94767 0.94968 1.67829 1.18127 1.08259 1.26707 1.22569 0.97437 0.89340 0.86580 1.20421 0.91460 0.98200 1.07265 0.92751 0.92836 0.88653 0.85780 0.85590 0.85283 0.93838 0.94079 0.92511 0.82666 0.83728 0.82114 0.81269 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.65 10.49 -19.43 -0.20 -4.85 16 3 C 0.13 2.08 6.68 -39.25 -0.26 1.81 16 4 C -0.22 -3.05 9.04 -39.40 -0.36 -3.40 16 5 C -0.07 -1.05 10.03 -39.64 -0.40 -1.45 16 6 C -0.14 -2.49 8.61 -39.35 -0.34 -2.83 16 7 C 0.21 4.00 5.24 -83.81 -0.44 3.57 16 8 N -0.94 -19.29 2.83 -59.83 -0.17 -19.46 16 9 C 0.25 6.14 5.01 -5.20 -0.03 6.11 16 10 C -0.53 -14.32 9.36 -34.44 -0.32 -14.64 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 14 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 S 2.69 51.88 5.56 -107.50 -0.60 51.28 16 19 O -0.93 -20.73 16.55 -57.17 -0.95 -21.67 16 20 O -0.96 -18.57 14.94 -57.17 -0.85 -19.43 16 21 C -0.73 -12.01 5.99 -39.44 -0.24 -12.25 16 22 C 0.03 0.44 9.65 -39.27 -0.38 0.06 16 23 C -0.19 -2.33 10.11 -39.44 -0.40 -2.73 16 24 C 0.14 1.70 11.18 -17.55 -0.20 1.50 16 25 N -0.50 -7.27 10.36 -13.25 -0.14 -7.40 16 26 C 0.20 3.08 10.69 -17.55 -0.19 2.89 16 27 C -0.15 -2.72 9.34 -39.24 -0.37 -3.09 16 28 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.34 6.29 -52.48 -0.33 1.01 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.13 2.31 7.54 -52.49 -0.40 1.92 16 34 H 0.04 1.08 7.55 -51.93 -0.39 0.69 16 35 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.16 2.27 7.72 -52.49 -0.40 1.87 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.17 2.40 7.63 -52.49 -0.40 2.00 16 41 H 0.13 2.36 7.94 -52.48 -0.42 1.94 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -33.41 367.26 -9.45 -42.85 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.77 Total: 2.83 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.01 Total: -21.48 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.43 Total: -51.47 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -2.00 Total: -45.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 51.88 SS G_CDS: -0.60 Total: 51.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.41 -9.45 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225513119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.280 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds