Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48501 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47219 * 299.99844 * 3 2 1 6 6 H 1.48504 * 109.47275 * 60.00113 * 3 2 1 7 7 C 1.39877 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00596 * 196.91958 * 7 2 1 9 9 C 1.41143 * 119.99980 * 16.91640 * 7 2 1 10 10 C 1.40881 * 120.16288 * 205.24598 * 9 7 2 11 11 C 1.36353 * 119.82942 * 180.02562 * 10 9 7 12 12 C 1.39510 * 120.16843 * 0.02562 * 11 10 9 13 13 N 1.39144 * 119.83490 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99795 * 139.28646 * 13 12 11 15 15 S 1.71198 * 120.00344 * 354.25210 * 14 13 12 16 16 N 1.34777 * 119.99672 * 174.25635 * 14 13 12 17 17 C 1.46501 * 119.99869 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.47154 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46948 * 179.97438 * 18 17 16 20 20 O 1.42908 * 109.46929 * 180.02562 * 19 18 17 21 21 C 1.42893 * 114.00101 * 180.02562 * 20 19 18 22 22 C 1.54896 * 110.48932 * 93.23702 * 21 20 19 23 23 C 1.55236 * 102.58570 * 156.67836 * 22 21 20 24 24 C 1.54264 * 104.23267 * 322.08225 * 23 22 21 25 25 C 1.53874 * 106.59986 * 23.61624 * 24 23 22 26 26 C 1.39511 * 120.33030 * 0.27262 * 12 11 10 27 27 C 1.36358 * 120.16091 * 359.44946 * 26 12 11 28 28 H 0.96996 * 120.00154 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.08205 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.91561 * 179.97438 * 11 10 9 31 31 H 0.96993 * 119.99723 * 319.27859 * 13 12 11 32 32 H 0.97001 * 120.00282 * 359.97438 * 16 14 13 33 33 H 1.08993 * 109.47227 * 59.99960 * 17 16 14 34 34 H 1.09000 * 109.47290 * 299.99190 * 17 16 14 35 35 H 1.09003 * 109.46888 * 60.00001 * 18 17 16 36 36 H 1.08996 * 109.46891 * 299.99532 * 18 17 16 37 37 H 1.08993 * 109.47265 * 60.00245 * 19 18 17 38 38 H 1.08996 * 109.47007 * 299.99540 * 19 18 17 39 39 H 1.09006 * 110.43523 * 330.69939 * 21 20 19 40 40 H 1.09005 * 110.75546 * 275.07040 * 22 21 20 41 41 H 1.08998 * 110.75321 * 38.43767 * 22 21 20 42 42 H 1.09004 * 110.46410 * 203.39822 * 23 22 21 43 43 H 1.08999 * 110.58383 * 80.83341 * 23 22 21 44 44 H 1.08995 * 110.03528 * 264.32842 * 24 23 22 45 45 H 1.09004 * 110.06933 * 142.92441 * 24 23 22 46 46 H 1.08998 * 110.03342 * 240.71371 * 25 24 23 47 47 H 1.08998 * 110.07567 * 119.30152 * 25 24 23 48 48 H 1.07994 * 119.92323 * 179.70240 * 26 12 11 49 49 H 1.08000 * 120.08492 * 180.26879 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2113 -0.0005 8 1 3.0533 -1.2318 0.2716 9 6 1.3485 -2.4071 -0.3567 10 6 1.8201 -3.6454 0.1216 11 6 1.1778 -4.7965 -0.2272 12 6 0.0565 -4.7501 -1.0560 13 7 -0.5940 -5.9289 -1.4072 14 6 -1.9406 -5.9702 -1.4438 15 16 -2.8532 -4.6206 -0.9178 16 7 -2.5689 -7.0741 -1.8946 17 6 -4.0326 -7.1189 -1.9350 18 6 -4.4865 -8.4732 -2.4838 19 6 -6.0152 -8.5201 -2.5254 20 8 -6.4391 -9.7852 -3.0374 21 6 -7.8580 -9.9334 -3.1184 22 6 -8.3661 -9.5278 -4.5244 23 6 -9.7115 -10.2947 -4.6321 24 6 -9.4328 -11.6479 -3.9458 25 6 -8.2544 -11.4182 -2.9834 26 6 -0.4127 -3.5281 -1.5387 27 6 0.2159 -2.3683 -1.1938 28 1 -0.4850 0.8400 -0.0004 29 1 2.6883 -3.6829 0.7630 30 1 1.5384 -5.7466 0.1384 31 1 -0.0783 -6.7208 -1.6256 32 1 -2.0518 -7.8387 -2.1930 33 1 -4.4028 -6.3230 -2.5811 34 1 -4.4282 -6.9835 -0.9284 35 1 -4.1163 -9.2694 -1.8380 36 1 -4.0910 -8.6082 -3.4904 37 1 -6.3857 -7.7239 -3.1709 38 1 -6.4103 -8.3852 -1.5185 39 1 -8.3477 -9.3364 -2.3490 40 1 -8.5266 -8.4511 -4.5814 41 1 -7.6706 -9.8572 -5.2963 42 1 -9.9816 -10.4455 -5.6773 43 1 -10.5021 -9.7570 -4.1085 44 1 -9.1655 -12.3966 -4.6914 45 1 -10.3117 -11.9730 -3.3891 46 1 -7.4151 -12.0554 -3.2620 47 1 -8.5607 -11.6312 -1.9593 48 1 -1.2784 -3.5003 -2.1837 49 1 -0.1510 -1.4227 -1.5646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225619397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = -23.306119 kcal Electronic energy + Delta-G solvation = -26337.796571 eV Core-core repulsion = 22582.973371 eV Total energy + Delta-G solvation = -3754.823200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.43025 -39.10962 -37.56338 -36.57528 -35.26899 -33.38350 -31.97922 -29.52671 -29.17514 -29.03094 -28.05275 -25.92344 -24.52437 -23.42634 -22.16035 -21.18706 -21.13621 -20.71440 -20.40229 -17.96363 -17.66037 -17.32785 -16.98634 -16.38495 -16.11247 -15.49716 -15.24035 -15.02225 -14.84951 -14.47209 -14.01526 -13.86932 -13.66022 -13.58083 -13.05060 -12.76274 -12.61740 -12.12098 -12.06650 -12.01619 -11.77172 -11.68703 -11.61589 -11.55408 -11.40855 -11.16768 -11.05729 -11.01460 -10.87647 -10.82454 -10.56522 -10.45693 -9.86582 -9.82211 -9.63702 -9.34308 -8.85243 -7.67785 -7.37699 -7.01071 -6.78443 -6.25325 -4.32253 1.73571 2.42841 2.81877 2.94244 3.08705 3.13250 3.15811 3.25257 3.41057 3.92633 3.99451 4.13431 4.17853 4.45638 4.60298 4.63247 4.67615 4.78759 4.85377 4.99800 5.03965 5.11436 5.18303 5.25790 5.27982 5.43078 5.44537 5.48271 5.61125 5.68497 5.71424 5.75228 5.80688 5.84073 5.87628 6.09263 6.28602 6.38098 6.58391 6.90616 6.99662 7.04649 7.12734 7.23060 7.31350 7.61529 7.68098 7.95064 8.06819 8.20940 8.28503 8.64901 8.87363 8.97874 10.16929 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.028401 B = 0.001514 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.646330 B =18487.618816 C =19207.039316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.452 4.452 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.039 4.039 13 N -0.591 5.591 14 C 0.541 3.459 15 S -0.636 6.636 16 N -0.700 5.700 17 C 0.134 3.866 18 C -0.131 4.131 19 C 0.067 3.933 20 O -0.381 6.381 21 C 0.083 3.917 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.038 4.038 27 C -0.164 4.164 28 H 0.283 0.717 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.390 0.610 32 H 0.391 0.609 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.111 0.889 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -20.101 -8.397 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.247 4.247 11 C -0.101 4.101 12 C -0.132 4.132 13 N -0.210 5.210 14 C 0.183 3.817 15 S -0.508 6.508 16 N -0.333 5.333 17 C 0.010 3.990 18 C -0.169 4.169 19 C -0.010 4.010 20 O -0.300 6.300 21 C 0.025 3.975 22 C -0.186 4.186 23 C -0.162 4.162 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.060 4.060 27 C -0.185 4.185 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.129 0.871 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.643 -19.115 -8.058 25.391 hybrid contribution 1.032 -0.535 -0.231 1.185 sum -13.612 -19.650 -8.289 25.300 Atomic orbital electron populations 1.69896 1.07514 1.29429 1.32963 1.25985 0.94761 1.01460 0.92458 0.86265 0.80920 0.80935 0.78660 1.18357 1.19619 1.19914 1.19650 0.97833 0.91242 1.39364 0.90223 1.17727 0.90846 0.91957 0.87845 1.20468 1.04296 0.92404 1.07487 1.19984 0.96095 0.97119 0.96948 1.16906 1.00413 0.83713 1.12155 1.41982 1.02340 1.13968 1.62701 1.22394 0.86039 0.90151 0.83162 1.93409 1.62907 1.28056 1.66424 1.44723 1.08144 1.15055 1.65343 1.21376 0.77486 0.96698 1.03470 1.21696 0.95058 0.97393 1.02799 1.22325 0.94323 0.85944 0.98387 1.87879 1.21631 1.35078 1.85407 1.23027 0.81089 0.96812 0.96538 1.23063 0.97234 1.00321 0.97950 1.22336 0.97094 0.95885 1.00903 1.22084 0.97869 0.97710 0.98396 1.22186 0.98528 0.95420 0.99943 1.20510 0.96534 0.91099 0.97809 1.20873 0.99229 0.96650 1.01762 0.90611 0.88625 0.89539 0.77500 0.77349 0.89712 0.89739 0.90555 0.90522 0.92647 0.92647 0.91398 0.91294 0.90439 0.91343 0.91435 0.91526 0.91576 0.90518 0.91270 0.87147 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.45 10.95 55.54 0.61 -19.84 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.45 -11.86 9.04 -37.87 -0.34 -12.20 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.17 5.57 -106.79 -0.59 2.57 16 10 C -0.23 -5.44 9.74 -39.26 -0.38 -5.82 16 11 C -0.08 -1.76 9.90 -39.79 -0.39 -2.15 16 12 C -0.04 -0.85 5.94 -83.59 -0.50 -1.35 16 13 N -0.59 -10.07 5.29 -11.28 -0.06 -10.12 16 14 C 0.54 9.31 7.73 -86.92 -0.67 8.64 16 15 S -0.64 -14.38 24.96 -107.50 -2.68 -17.07 16 16 N -0.70 -8.35 5.56 -62.03 -0.34 -8.70 16 17 C 0.13 1.44 5.13 -4.04 -0.02 1.42 16 18 C -0.13 -1.05 5.70 -26.73 -0.15 -1.20 16 19 C 0.07 0.54 5.79 37.16 0.22 0.76 16 20 O -0.38 -3.47 10.05 -35.23 -0.35 -3.83 16 21 C 0.08 0.62 3.33 -25.07 -0.08 0.53 16 22 C -0.15 -0.99 6.65 -24.55 -0.16 -1.16 16 23 C -0.12 -0.68 6.84 -24.89 -0.17 -0.85 16 24 C -0.12 -0.65 6.80 -25.61 -0.17 -0.83 16 25 C -0.12 -0.80 6.56 -25.61 -0.17 -0.96 16 26 C -0.04 -0.93 7.76 -39.78 -0.31 -1.24 16 27 C -0.16 -4.37 8.63 -39.26 -0.34 -4.71 16 28 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 29 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.39 4.99 8.84 -40.82 -0.36 4.63 16 32 H 0.39 3.35 8.49 -40.82 -0.35 3.00 16 33 H 0.08 1.02 7.99 -51.93 -0.42 0.61 16 34 H 0.08 1.02 7.99 -51.93 -0.41 0.61 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 39 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.11 2.74 6.16 -47.15 -0.29 2.45 16 49 H 0.12 3.33 6.17 -52.49 -0.32 3.01 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -32.07 407.37 -14.08 -46.15 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.02 Total: 10.55 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -4.34 Total: -16.79 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.20 Total: -38.66 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.35 Total: -3.83 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -14.38 SS G_CDS: -2.68 Total: -17.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.07 -14.08 -46.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225619397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.847 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds