Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47361 * 2 1 4 4 C 1.34783 * 117.00372 * 180.02562 * 3 2 1 5 5 O 1.21533 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47236 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.39481 * 121.48470 * 180.02562 * 6 4 3 8 8 C 1.41008 * 117.85771 * 179.97438 * 7 6 4 9 9 C 1.48254 * 119.54766 * 180.02562 * 8 7 6 10 10 C 1.39440 * 120.11206 * 359.72110 * 9 8 7 11 11 C 1.37959 * 119.88007 * 179.76419 * 10 9 8 12 12 C 1.38468 * 120.11728 * 0.49369 * 11 10 9 13 13 Cl 1.73592 * 119.88558 * 179.73906 * 12 11 10 14 14 C 1.38477 * 120.23132 * 359.76197 * 12 11 10 15 15 C 1.37960 * 120.11186 * 0.02562 * 14 12 11 16 16 N 1.31404 * 120.90693 * 359.97438 * 8 7 6 17 17 N 1.28176 * 123.50817 * 359.97438 * 16 8 7 18 18 C 1.36349 * 119.00625 * 180.27930 * 17 16 8 19 19 H 1.07997 * 119.99589 * 179.73256 * 18 17 16 20 20 C 1.39499 * 120.00022 * 359.73064 * 18 17 16 21 21 N 1.30966 * 120.00112 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47094 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46960 * 120.00109 * 22 20 18 25 25 H 1.48497 * 109.47263 * 239.99976 * 22 20 18 26 26 C 1.34754 * 121.98537 * 0.02562 * 17 16 8 27 27 O 1.21818 * 120.64265 * 180.02562 * 26 17 16 28 28 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47041 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47092 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47191 * 239.99991 * 2 1 3 32 32 H 1.09009 * 109.47344 * 120.00044 * 2 1 3 33 33 H 1.08001 * 121.06940 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.05715 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.94170 * 180.21446 * 11 10 9 36 36 H 1.07997 * 119.94234 * 179.97438 * 14 12 11 37 37 H 1.08003 * 120.05581 * 179.97438 * 15 14 12 38 38 H 0.96998 * 119.99928 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0906 0.5818 -0.0005 6 6 3.9130 2.9061 0.0000 7 6 5.2906 3.1247 -0.0011 8 6 5.7460 4.4592 -0.0010 9 6 7.2028 4.7345 -0.0027 10 6 8.1142 3.6792 0.0015 11 6 9.4687 3.9409 -0.0050 12 6 9.9237 5.2487 -0.0054 13 17 11.6294 5.5711 -0.0068 14 6 9.0228 6.3003 -0.0042 15 6 7.6662 6.0495 -0.0021 16 7 4.8970 5.4621 -0.0005 17 7 3.6241 5.3116 -0.0005 18 6 2.8276 6.4182 -0.0057 19 1 1.7530 6.3100 -0.0102 20 6 3.4006 7.6901 -0.0053 21 7 4.7036 7.8213 0.0006 22 14 2.3093 9.2062 -0.0118 23 1 0.8838 8.7900 -0.0162 24 1 2.5835 10.0186 1.2006 25 1 2.5929 10.0151 -1.2243 26 6 3.0494 4.0928 -0.0005 27 8 1.8366 3.9782 -0.0010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.9860 2.2983 -0.0019 34 1 7.7603 2.6588 0.0065 35 1 10.1755 3.1242 -0.0052 36 1 9.3828 7.3185 -0.0042 37 1 6.9644 6.8704 -0.0008 38 1 5.1020 8.7057 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225965117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = -33.995745 kcal Electronic energy + Delta-G solvation = -27428.813867 eV Core-core repulsion = 23263.984140 eV Total energy + Delta-G solvation = -4164.829727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94401 -39.45141 -38.81723 -36.66034 -36.17990 -35.95991 -34.76841 -32.69751 -31.49598 -30.95785 -30.60519 -29.19896 -26.53120 -25.21014 -23.42635 -22.88963 -21.90126 -21.75897 -20.57341 -18.98072 -17.69572 -17.17078 -16.36815 -16.01651 -15.93624 -15.75959 -15.51565 -15.25765 -14.77740 -14.40406 -14.31045 -13.70484 -13.61458 -13.24467 -13.12434 -12.90979 -12.55786 -12.37359 -12.19370 -12.12499 -11.74800 -11.62532 -11.57531 -11.31881 -11.23557 -11.19749 -11.19278 -10.83049 -10.51149 -10.31099 -10.05299 -9.99214 -9.94182 -9.34788 -8.68971 -8.56663 -8.46926 -7.44545 -7.20285 -4.90826 1.18717 1.25373 1.69998 2.37669 2.66998 2.74615 2.80888 2.85958 3.23926 3.26025 3.38478 3.82230 3.99647 4.20499 4.82966 4.86867 5.11959 5.17829 5.21559 5.22843 5.33895 5.50128 5.54037 5.72750 5.76176 5.82861 5.94046 6.00145 6.04718 6.18700 6.29741 6.42084 6.44804 6.52819 6.65198 6.72420 6.87354 7.02424 7.08610 7.25569 7.32861 7.55550 8.03106 8.51628 8.80991 9.49974 9.57271 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.004038 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.310840 B = 6932.875093 C =10412.731366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.331 6.331 4 C 0.540 3.460 5 O -0.544 6.544 6 C -0.309 4.309 7 C -0.023 4.023 8 C -0.027 4.027 9 C 0.026 3.974 10 C -0.118 4.118 11 C -0.110 4.110 12 C -0.053 4.053 13 Cl -0.092 7.092 14 C -0.112 4.112 15 C -0.088 4.088 16 N -0.190 5.190 17 N -0.103 5.103 18 C -0.241 4.241 19 H 0.149 0.851 20 C 0.034 3.966 21 N -0.709 5.709 22 Si 0.951 3.049 23 H -0.253 1.253 24 H -0.265 1.265 25 H -0.265 1.265 26 C 0.452 3.548 27 O -0.526 6.526 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.164 0.836 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -0.863 -0.014 3.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.247 6.247 4 C 0.389 3.611 5 O -0.438 6.438 6 C -0.320 4.320 7 C -0.050 4.050 8 C -0.163 4.163 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.129 4.129 12 C -0.080 4.080 13 Cl -0.064 7.064 14 C -0.131 4.131 15 C -0.107 4.107 16 N -0.038 5.038 17 N 0.095 4.905 18 C -0.385 4.385 19 H 0.166 0.834 20 C -0.188 4.188 21 N -0.336 5.336 22 Si 0.772 3.228 23 H -0.176 1.176 24 H -0.190 1.190 25 H -0.190 1.190 26 C 0.257 3.743 27 O -0.407 6.407 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.526 -0.466 -0.009 3.557 hybrid contribution -0.061 -0.482 -0.002 0.485 sum 3.465 -0.947 -0.011 3.592 Atomic orbital electron populations 1.21746 0.93126 1.02009 1.03696 1.22884 0.95143 0.81687 1.01734 1.86830 1.23812 1.29950 1.84130 1.20266 0.80172 0.88678 0.71945 1.90737 1.60662 1.42166 1.50225 1.20344 0.92919 0.89538 1.29230 1.22092 0.93522 0.96630 0.92746 1.19364 0.92538 0.88274 1.16089 1.18226 0.89491 0.93178 0.96712 1.21111 0.91766 0.99181 1.01654 1.20765 0.95635 0.94677 1.01819 1.20900 0.83638 0.95001 1.08443 1.98326 1.14792 1.96002 1.97244 1.20992 0.92690 0.98035 1.01360 1.21693 0.94518 0.97906 0.96601 1.71960 0.89305 1.27608 1.14879 1.43143 1.03276 1.07712 1.36389 1.21267 0.93095 0.81969 1.42146 0.83368 1.26033 0.96779 1.00518 0.95507 1.70059 1.10474 1.26303 1.26753 0.85448 0.80089 0.78027 0.79246 1.17621 1.19010 1.19004 1.19179 0.89214 0.83805 0.82131 1.90783 1.13134 1.85168 1.51571 0.90912 0.91548 0.91542 0.91933 0.91933 0.84915 0.85135 0.85480 0.85488 0.81893 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 37.16 0.38 -1.52 16 2 C 0.06 0.97 6.20 37.16 0.23 1.20 16 3 O -0.33 -7.08 8.68 -47.41 -0.41 -7.49 16 4 C 0.54 12.20 7.91 34.39 0.27 12.47 16 5 O -0.54 -12.33 16.29 -19.29 -0.31 -12.65 16 6 C -0.31 -7.19 6.10 -102.34 -0.62 -7.82 16 7 C -0.02 -0.48 9.12 -38.07 -0.35 -0.83 16 8 C -0.03 -0.57 6.81 -82.88 -0.56 -1.14 16 9 C 0.03 0.48 5.88 -104.89 -0.62 -0.13 16 10 C -0.12 -1.86 9.42 -39.24 -0.37 -2.23 16 11 C -0.11 -1.57 9.81 -39.60 -0.39 -1.96 16 12 C -0.05 -0.77 6.32 -39.41 -0.25 -1.02 16 13 Cl -0.09 -1.19 28.95 -51.86 -1.50 -2.69 16 14 C -0.11 -1.70 9.81 -39.59 -0.39 -2.09 16 15 C -0.09 -1.55 9.57 -39.24 -0.38 -1.93 16 16 N -0.19 -4.38 7.14 33.39 0.24 -4.14 16 17 N -0.10 -2.50 3.34 -12.14 -0.04 -2.54 16 18 C -0.24 -5.48 9.58 -15.07 -0.14 -5.63 16 19 H 0.15 3.30 7.10 -52.49 -0.37 2.92 16 20 C 0.03 0.69 5.48 -17.45 -0.10 0.60 16 21 N -0.71 -14.60 10.11 55.52 0.56 -14.04 16 22 Si 0.95 15.22 29.55 -169.99 -5.02 10.20 16 23 H -0.25 -4.06 7.11 56.52 0.40 -3.66 16 24 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 25 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 26 C 0.45 11.27 7.61 -12.83 -0.10 11.17 16 27 O -0.53 -13.84 15.09 -14.62 -0.22 -14.06 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.13 2.50 5.99 -52.49 -0.31 2.18 16 34 H 0.13 1.89 6.19 -52.49 -0.32 1.56 16 35 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.16 3.07 6.26 -52.48 -0.33 2.74 16 38 H 0.29 5.21 8.30 -40.82 -0.34 4.87 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -27.15 351.05 -8.23 -35.38 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.43 Total: 7.61 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.38 Total: -0.87 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.76 Total: -20.72 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.95 Total: -34.20 kcal Atomic # 14 Polarization: 15.22 SS G_CDS: -5.02 Total: 10.20 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.15 -8.23 -35.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225965117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.384 kcal (2) G-P(sol) polarization free energy of solvation -27.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds