Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47361 * 2 1 4 4 C 1.34783 * 117.00372 * 180.02562 * 3 2 1 5 5 O 1.21533 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47236 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.39481 * 121.48470 * 180.02562 * 6 4 3 8 8 C 1.41008 * 117.85771 * 179.97438 * 7 6 4 9 9 C 1.48254 * 119.54766 * 180.02562 * 8 7 6 10 10 C 1.39440 * 120.11206 * 359.72110 * 9 8 7 11 11 C 1.37959 * 119.88007 * 179.76419 * 10 9 8 12 12 C 1.38468 * 120.11728 * 0.49369 * 11 10 9 13 13 Cl 1.73592 * 119.88558 * 179.73906 * 12 11 10 14 14 C 1.38477 * 120.23132 * 359.76197 * 12 11 10 15 15 C 1.37960 * 120.11186 * 0.02562 * 14 12 11 16 16 N 1.31404 * 120.90693 * 359.97438 * 8 7 6 17 17 N 1.28176 * 123.50817 * 359.97438 * 16 8 7 18 18 C 1.36349 * 119.00625 * 180.27930 * 17 16 8 19 19 H 1.07997 * 119.99589 * 179.73256 * 18 17 16 20 20 C 1.39499 * 120.00022 * 359.73064 * 18 17 16 21 21 N 1.30966 * 120.00112 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47094 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46960 * 120.00109 * 22 20 18 25 25 H 1.48497 * 109.47263 * 239.99976 * 22 20 18 26 26 C 1.34754 * 121.98537 * 0.02562 * 17 16 8 27 27 O 1.21818 * 120.64265 * 180.02562 * 26 17 16 28 28 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47041 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47092 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47191 * 239.99991 * 2 1 3 32 32 H 1.09009 * 109.47344 * 120.00044 * 2 1 3 33 33 H 1.08001 * 121.06940 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.05715 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.94170 * 180.21446 * 11 10 9 36 36 H 1.07997 * 119.94234 * 179.97438 * 14 12 11 37 37 H 1.08003 * 120.05581 * 179.97438 * 15 14 12 38 38 H 0.96998 * 119.99928 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0906 0.5818 -0.0005 6 6 3.9130 2.9061 0.0000 7 6 5.2906 3.1247 -0.0011 8 6 5.7460 4.4592 -0.0010 9 6 7.2028 4.7345 -0.0027 10 6 8.1142 3.6792 0.0015 11 6 9.4687 3.9409 -0.0050 12 6 9.9237 5.2487 -0.0054 13 17 11.6294 5.5711 -0.0068 14 6 9.0228 6.3003 -0.0042 15 6 7.6662 6.0495 -0.0021 16 7 4.8970 5.4621 -0.0005 17 7 3.6241 5.3116 -0.0005 18 6 2.8276 6.4182 -0.0057 19 1 1.7530 6.3100 -0.0102 20 6 3.4006 7.6901 -0.0053 21 7 4.7036 7.8213 0.0006 22 14 2.3093 9.2062 -0.0118 23 1 0.8838 8.7900 -0.0162 24 1 2.5835 10.0186 1.2006 25 1 2.5929 10.0151 -1.2243 26 6 3.0494 4.0928 -0.0005 27 8 1.8366 3.9782 -0.0010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.9860 2.2983 -0.0019 34 1 7.7603 2.6588 0.0065 35 1 10.1755 3.1242 -0.0052 36 1 9.3828 7.3185 -0.0042 37 1 6.9644 6.8704 -0.0008 38 1 5.1020 8.7057 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225965117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = -45.680706 kcal Electronic energy + Delta-G solvation = -27429.320565 eV Core-core repulsion = 23263.984140 eV Total energy + Delta-G solvation = -4165.336425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.67768 -41.11233 -40.12977 -38.37687 -37.60574 -37.38646 -36.36636 -34.30999 -32.89500 -32.31684 -31.92687 -30.74701 -28.15626 -26.85317 -24.95727 -24.26483 -23.24032 -23.22226 -22.10048 -20.63036 -19.38279 -18.62841 -17.77592 -17.59487 -17.58375 -17.43176 -17.11601 -16.97498 -16.13539 -15.82109 -15.66797 -15.11917 -15.03570 -14.50951 -14.39650 -14.33688 -13.91660 -13.84173 -13.83248 -13.56084 -13.26551 -13.12141 -12.90685 -12.63170 -12.50903 -12.48467 -12.41536 -12.09711 -11.78437 -11.77013 -11.70303 -11.59071 -11.48809 -10.90996 -10.31411 -9.97086 -9.92035 -9.04140 -8.78003 -6.62018 -0.54895 -0.11786 0.45998 1.03340 1.21441 1.35551 1.43422 1.59551 1.59819 1.76906 1.91142 2.27897 2.43450 2.77956 3.19121 3.20103 3.76688 3.84752 3.98540 4.05135 4.06694 4.10789 4.18897 4.30550 4.45383 4.51057 4.70111 4.78122 4.80954 4.84379 4.88503 4.95596 5.10985 5.14385 5.19675 5.35387 5.36514 5.46478 5.61531 5.75743 5.87963 5.95213 6.36056 6.82834 7.02222 7.77625 8.03902 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.004038 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.310840 B = 6932.875093 C =10412.731366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.351 6.351 4 C 0.538 3.462 5 O -0.550 6.550 6 C -0.325 4.325 7 C -0.030 4.030 8 C -0.017 4.017 9 C -0.005 4.005 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.047 4.047 13 Cl -0.070 7.070 14 C -0.110 4.110 15 C -0.098 4.098 16 N -0.209 5.209 17 N -0.114 5.114 18 C -0.271 4.271 19 H 0.142 0.858 20 C 0.006 3.994 21 N -0.725 5.725 22 Si 1.022 2.978 23 H -0.257 1.257 24 H -0.256 1.256 25 H -0.256 1.256 26 C 0.427 3.573 27 O -0.562 6.562 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -0.562 -0.018 5.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.267 6.267 4 C 0.388 3.612 5 O -0.445 6.445 6 C -0.336 4.336 7 C -0.057 4.057 8 C -0.155 4.155 9 C -0.007 4.007 10 C -0.130 4.130 11 C -0.123 4.123 12 C -0.074 4.074 13 Cl -0.041 7.041 14 C -0.128 4.128 15 C -0.117 4.117 16 N -0.055 5.055 17 N 0.085 4.915 18 C -0.414 4.414 19 H 0.159 0.841 20 C -0.215 4.215 21 N -0.351 5.351 22 Si 0.838 3.162 23 H -0.180 1.180 24 H -0.180 1.180 25 H -0.180 1.180 26 C 0.234 3.766 27 O -0.447 6.447 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.489 -0.162 -0.013 5.491 hybrid contribution -0.394 -0.572 0.000 0.695 sum 5.095 -0.734 -0.013 5.147 Atomic orbital electron populations 1.21788 0.90552 1.04362 1.03127 1.23343 0.97218 0.79469 1.02520 1.86824 1.23042 1.33164 1.83678 1.20217 0.80740 0.88366 0.71872 1.90700 1.60894 1.42147 1.50787 1.20642 0.93845 0.89675 1.29449 1.22255 0.93018 0.97287 0.93120 1.19974 0.93892 0.88189 1.13398 1.18297 0.88175 0.94511 0.99699 1.21269 0.92107 0.99094 1.00496 1.21075 0.95352 0.95527 1.00310 1.21066 0.84787 0.95001 1.06563 1.98343 1.12794 1.95935 1.97024 1.21128 0.91694 0.99398 1.00611 1.21600 0.95486 0.97167 0.97421 1.71999 0.89007 1.28465 1.16001 1.43320 1.03788 1.07797 1.36592 1.21626 0.93228 0.82859 1.43667 0.84058 1.26938 0.98122 1.02033 0.94367 1.70070 1.11622 1.27953 1.25484 0.84471 0.77872 0.74082 0.79742 1.18025 1.17985 1.17969 1.19495 0.89265 0.84644 0.83156 1.90720 1.14071 1.85616 1.54254 0.86981 0.92112 0.92106 0.91125 0.91124 0.82662 0.83817 0.82488 0.83540 0.83584 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 10.29 71.98 0.74 -2.76 16 2 C 0.05 1.54 6.20 71.98 0.45 1.99 16 3 O -0.35 -15.51 8.68 -50.54 -0.44 -15.94 16 4 C 0.54 25.05 7.91 70.19 0.56 25.61 16 5 O -0.55 -25.13 16.29 19.73 0.32 -24.81 16 6 C -0.32 -15.76 6.10 -18.38 -0.11 -15.87 16 7 C -0.03 -1.28 9.12 23.25 0.21 -1.07 16 8 C -0.02 -0.76 6.81 42.55 0.29 -0.47 16 9 C 0.00 -0.17 5.88 -20.04 -0.12 -0.29 16 10 C -0.11 -3.28 9.42 22.49 0.21 -3.07 16 11 C -0.10 -2.64 9.81 22.26 0.22 -2.42 16 12 C -0.05 -1.23 6.32 22.38 0.14 -1.09 16 13 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 14 C -0.11 -3.11 9.81 22.26 0.22 -2.89 16 15 C -0.10 -3.39 9.57 22.49 0.22 -3.17 16 16 N -0.21 -10.02 7.14 -48.28 -0.34 -10.36 16 17 N -0.11 -5.82 3.34 -310.49 -1.04 -6.86 16 18 C -0.27 -12.92 9.58 84.30 0.81 -12.11 16 19 H 0.14 6.72 7.10 -2.91 -0.02 6.69 16 20 C 0.01 0.25 5.48 85.13 0.47 0.72 16 21 N -0.72 -30.20 10.11 21.74 0.22 -29.98 16 22 Si 1.02 30.90 29.55 68.60 2.03 32.93 16 23 H -0.26 -7.87 7.11 99.48 0.71 -7.16 16 24 H -0.26 -7.32 7.11 99.48 0.71 -6.61 16 25 H -0.26 -7.31 7.11 99.48 0.71 -6.60 16 26 C 0.43 22.56 7.61 86.47 0.66 23.22 16 27 O -0.56 -31.52 15.09 14.11 0.21 -31.31 16 28 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.16 5.79 5.99 -2.91 -0.02 5.78 16 34 H 0.14 3.84 6.19 -2.91 -0.02 3.82 16 35 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.15 5.57 6.26 -2.91 -0.02 5.55 16 38 H 0.30 10.81 8.30 -92.71 -0.77 10.04 16 Total: -1.00 -61.41 351.05 6.97 -54.45 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.13 Total: 27.20 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.95 Total: 6.32 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.16 Total: -47.20 kcal Atomic # 8 Polarization: -72.16 SS G_CDS: 0.10 Total: -72.06 kcal Atomic # 14 Polarization: 30.90 SS G_CDS: 2.03 Total: 32.93 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -61.41 6.97 -54.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225965117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.766 kcal (2) G-P(sol) polarization free energy of solvation -61.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds