Wall clock time and date at job start Tue Mar 31 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29782 * 126.21966 * 2 1 4 4 N 1.39457 * 111.33116 * 180.02562 * 3 2 1 5 5 C 1.40092 * 124.95340 * 180.02562 * 4 3 2 6 6 C 1.38869 * 120.05722 * 179.70244 * 5 4 3 7 7 C 1.38106 * 119.93813 * 179.69572 * 6 5 4 8 8 C 1.38387 * 120.05716 * 0.60130 * 7 6 5 9 9 Cl 1.73604 * 119.94246 * 179.70011 * 8 7 6 10 10 C 1.38387 * 120.11816 * 359.66971 * 8 7 6 11 11 C 1.38108 * 120.05632 * 0.02858 * 10 8 7 12 12 C 1.34846 * 110.09871 * 359.70836 * 4 3 2 13 13 O 1.21963 * 126.97438 * 180.31209 * 12 4 3 14 14 C 1.46809 * 106.04741 * 0.44299 * 12 4 3 15 15 C 1.38447 * 127.51985 * 179.83593 * 14 12 4 16 16 N 1.34853 * 120.00289 * 172.58203 * 15 14 12 17 17 N 1.40099 * 120.00330 * 174.19881 * 16 15 14 18 18 C 1.34778 * 120.00375 * 180.02562 * 17 16 15 19 19 O 1.21685 * 119.99480 * 0.02562 * 18 17 16 20 20 C 1.46368 * 120.00174 * 180.02562 * 18 17 16 21 21 H 1.08001 * 120.00273 * 0.02562 * 20 18 17 22 22 C 1.40051 * 119.99892 * 180.02562 * 20 18 17 23 23 N 1.30668 * 120.00062 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 119.99942 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46987 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47188 * 300.00267 * 24 22 20 27 27 H 1.48499 * 109.46707 * 60.00332 * 24 22 20 28 28 H 1.09009 * 109.46899 * 264.67427 * 1 2 3 29 29 H 1.08997 * 109.47538 * 24.66766 * 1 2 3 30 30 H 1.08994 * 109.47594 * 144.67198 * 1 2 3 31 31 H 1.07997 * 120.02812 * 359.97410 * 6 5 4 32 32 H 1.07997 * 119.96767 * 180.29306 * 7 6 5 33 33 H 1.07998 * 119.97438 * 180.02562 * 10 8 7 34 34 H 1.07994 * 120.03419 * 180.02562 * 11 10 8 35 35 H 1.08008 * 120.00218 * 352.58316 * 15 14 12 36 36 H 0.97003 * 119.99698 * 354.20424 * 16 15 14 37 37 H 0.97003 * 119.99971 * 0.02562 * 17 16 15 38 38 H 0.97001 * 119.99937 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2739 1.0470 0.0000 4 7 3.6216 0.6887 -0.0006 5 6 4.6923 1.5922 -0.0002 6 6 5.9990 1.1221 0.0054 7 6 7.0527 2.0149 -0.0006 8 6 6.8072 3.3768 0.0004 9 17 8.1339 4.4965 0.0007 10 6 5.5059 3.8479 0.0005 11 6 4.4486 2.9593 0.0002 12 6 3.7441 -0.6542 0.0055 13 8 4.7810 -1.2962 0.0120 14 6 2.3759 -1.1865 -0.0007 15 6 1.9882 -2.5156 -0.0009 16 7 0.6870 -2.8385 0.1438 17 7 0.2786 -4.1731 0.0223 18 6 -1.0220 -4.4957 0.1664 19 8 -1.8417 -3.6277 0.4016 20 6 -1.4485 -5.8902 0.0399 21 1 -0.7209 -6.6607 -0.1684 22 6 -2.8001 -6.2253 0.1891 23 7 -3.6805 -5.2931 0.4407 24 14 -3.3445 -8.0049 0.0271 25 1 -4.8133 -8.0933 0.2271 26 1 -2.9976 -8.5074 -1.3265 27 1 -2.6553 -8.8286 1.0526 28 1 -0.3633 -0.0954 1.0233 29 1 -0.3634 0.9338 -0.4289 30 1 -0.3634 -0.8384 -0.5942 31 1 6.1910 0.0594 0.0099 32 1 8.0691 1.6499 -0.0011 33 1 5.3170 4.9112 0.0008 34 1 3.4333 3.3273 -0.0002 35 1 2.7280 -3.2939 -0.1170 36 1 0.0336 -2.1466 0.3319 37 1 0.9320 -4.8650 -0.1656 38 1 -4.6166 -5.5253 0.5444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226863775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:08 Heat of formation + Delta-G solvation = 57.648934 kcal Electronic energy + Delta-G solvation = -26146.527420 eV Core-core repulsion = 22017.964455 eV Total energy + Delta-G solvation = -4128.562965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25064 -39.23149 -38.69711 -37.00591 -36.62284 -36.28523 -33.74794 -32.97693 -31.81232 -31.19054 -30.40227 -28.69947 -27.60680 -26.48753 -24.21053 -22.96913 -22.19944 -21.47634 -20.05797 -19.74673 -18.28153 -17.46209 -17.29345 -16.75577 -16.12935 -15.81014 -15.56252 -15.10462 -14.86627 -14.30384 -14.22024 -14.12108 -14.02533 -13.64079 -13.58150 -13.41657 -13.27560 -13.00982 -12.48664 -12.35332 -12.24391 -12.08070 -11.70170 -11.69533 -11.39259 -11.27968 -11.05274 -10.99545 -10.81578 -10.64081 -9.97990 -9.35845 -9.31737 -9.18874 -9.01090 -8.44972 -7.85020 -7.24928 -6.72381 -5.21828 0.92336 0.98369 1.17825 2.01568 2.13712 2.56540 2.61292 2.89333 2.97196 2.98772 3.25538 3.72854 3.78334 4.02145 4.19100 4.34627 4.61409 4.73649 4.78501 5.07948 5.12394 5.17749 5.23695 5.34938 5.45286 5.52100 5.67282 5.72384 5.80184 5.83942 5.95601 6.15138 6.19713 6.42140 6.52270 6.63670 6.93370 6.95733 7.29988 7.63083 7.76494 7.88144 8.22419 8.46471 8.61945 9.86166 10.17847 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.040698 B = 0.001737 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.821203 B =16115.418809 C =16776.130751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.163 3.837 3 N -0.292 5.292 4 N -0.406 5.406 5 C 0.199 3.801 6 C -0.146 4.146 7 C -0.082 4.082 8 C -0.065 4.065 9 Cl -0.081 7.081 10 C -0.087 4.087 11 C -0.128 4.128 12 C 0.548 3.452 13 O -0.538 6.538 14 C -0.428 4.428 15 C 0.322 3.678 16 N -0.439 5.439 17 N -0.571 5.571 18 C 0.545 3.455 19 O -0.569 6.569 20 C -0.525 4.525 21 H 0.080 0.920 22 C 0.086 3.914 23 N -0.754 5.754 24 Si 0.923 3.077 25 H -0.277 1.277 26 H -0.264 1.264 27 H -0.264 1.264 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.170 0.830 36 H 0.438 0.562 37 H 0.414 0.586 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 9.605 -1.235 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.019 4.019 3 N -0.105 5.105 4 N -0.212 5.212 5 C 0.104 3.896 6 C -0.167 4.167 7 C -0.102 4.102 8 C -0.093 4.093 9 Cl -0.052 7.052 10 C -0.106 4.106 11 C -0.149 4.149 12 C 0.344 3.656 13 O -0.418 6.418 14 C -0.449 4.449 15 C 0.164 3.836 16 N -0.141 5.141 17 N -0.324 5.324 18 C 0.353 3.647 19 O -0.449 6.449 20 C -0.563 4.563 21 H 0.098 0.902 22 C -0.137 4.137 23 N -0.381 5.381 24 Si 0.746 3.254 25 H -0.202 1.202 26 H -0.189 1.189 27 H -0.189 1.189 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.187 0.813 36 H 0.287 0.713 37 H 0.254 0.746 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.875 10.825 -1.017 16.101 hybrid contribution 0.020 -1.470 -0.091 1.473 sum 11.895 9.355 -1.107 15.174 Atomic orbital electron populations 1.20555 0.86068 1.04703 1.04182 1.23609 0.95785 0.89582 0.92899 1.75992 0.86303 1.23787 1.24370 1.46387 1.03336 1.05400 1.66042 1.17679 0.85334 0.88847 0.97743 1.21517 0.89576 1.02720 1.02911 1.20865 0.99704 0.90474 0.99128 1.20857 0.88717 0.90593 1.09094 1.98348 1.47399 1.62228 1.97211 1.20834 0.90008 1.00247 0.99555 1.20819 1.00140 0.90557 1.03380 1.18194 0.89059 0.81243 0.77065 1.90750 1.33560 1.63714 1.53791 1.19931 0.94126 0.91548 1.39248 1.21706 0.84681 0.95659 0.81572 1.44035 1.07239 1.03565 1.59300 1.46854 1.11434 0.93316 1.80838 1.18870 0.76974 0.90982 0.77858 1.90668 1.50079 1.50126 1.54020 1.20636 0.93856 0.89729 1.52039 0.90207 1.25757 0.95957 0.99566 0.92403 1.69952 1.02931 1.34023 1.31226 0.86162 0.78138 0.81238 0.79866 1.20158 1.18854 1.18865 0.88829 0.89019 0.89699 0.81951 0.84571 0.84664 0.83914 0.81283 0.71292 0.74618 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 8.84 36.01 0.32 -0.82 16 2 C 0.16 2.36 7.45 -79.88 -0.60 1.77 16 3 N -0.29 -4.59 11.48 35.02 0.40 -4.19 16 4 N -0.41 -6.71 3.74 -10.89 -0.04 -6.75 16 5 C 0.20 2.99 6.67 -83.61 -0.56 2.43 16 6 C -0.15 -2.05 9.36 -39.40 -0.37 -2.42 16 7 C -0.08 -0.97 9.82 -39.57 -0.39 -1.36 16 8 C -0.07 -0.74 6.32 -39.47 -0.25 -0.99 16 9 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 10 C -0.09 -0.97 9.82 -39.57 -0.39 -1.36 16 11 C -0.13 -1.65 9.63 -39.39 -0.38 -2.03 16 12 C 0.55 9.37 8.03 -12.76 -0.10 9.27 16 13 O -0.54 -9.84 15.16 4.95 0.08 -9.76 16 14 C -0.43 -6.41 6.29 -102.78 -0.65 -7.06 16 15 C 0.32 4.16 10.84 -16.15 -0.18 3.99 16 16 N -0.44 -6.49 6.02 31.04 0.19 -6.30 16 17 N -0.57 -9.62 6.29 30.19 0.19 -9.43 16 18 C 0.55 12.43 7.86 -12.99 -0.10 12.32 16 19 O -0.57 -14.98 14.86 5.20 0.08 -14.91 16 20 C -0.53 -12.07 9.54 -35.63 -0.34 -12.41 16 21 H 0.08 1.61 7.85 -52.49 -0.41 1.20 16 22 C 0.09 2.01 5.50 -17.37 -0.10 1.92 16 23 N -0.75 -19.27 11.83 55.55 0.66 -18.62 16 24 Si 0.92 17.04 29.56 -169.99 -5.02 12.02 16 25 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 27 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 28 H 0.09 1.02 8.13 -51.92 -0.42 0.60 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.05 6.38 -51.93 -0.33 0.72 16 31 H 0.16 2.47 5.37 -52.49 -0.28 2.19 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.76 7.63 -52.49 -0.40 1.36 16 35 H 0.17 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.44 6.76 4.17 -182.60 -0.76 6.00 16 37 H 0.41 5.56 8.67 -182.60 -1.58 3.97 16 38 H 0.28 6.45 8.29 -40.82 -0.34 6.12 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -30.67 354.00 -8.73 -39.40 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.02 Total: 12.24 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -4.07 Total: 3.26 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 1.40 Total: -45.28 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.15 Total: -24.67 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.02 Total: 12.02 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.67 -8.73 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226863775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.052 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds