Wall clock time and date at job start Tue Mar 31 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48327 * 2 1 4 4 C 1.53093 * 109.48033 * 120.03578 * 2 1 3 5 5 C 1.52476 * 109.52066 * 179.14576 * 4 2 1 6 6 C 1.52468 * 110.72621 * 301.25018 * 5 4 2 7 7 C 1.53093 * 109.52283 * 58.75231 * 6 5 4 8 8 C 1.53002 * 109.47808 * 60.81337 * 7 6 5 9 9 C 1.52997 * 109.48320 * 180.84054 * 7 6 5 10 10 C 1.53000 * 109.47478 * 239.97743 * 2 1 3 11 11 N 1.46856 * 110.49303 * 63.99943 * 5 4 2 12 12 C 1.34673 * 106.41956 * 118.55818 * 11 5 4 13 13 O 1.21535 * 123.78808 * 180.02562 * 12 11 5 14 14 N 1.33862 * 112.41937 * 359.97438 * 12 11 5 15 15 C 1.46507 * 124.19155 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47168 * 90.02257 * 15 14 12 17 17 H 1.09004 * 109.46817 * 305.00433 * 16 15 14 18 18 C 1.47209 * 109.46854 * 65.00035 * 16 15 14 19 19 N 6.02781 * 100.04777 * 110.12470 * 2 1 3 20 20 C 1.52998 * 109.46984 * 184.99986 * 16 15 14 21 21 C 1.50703 * 109.46789 * 174.99922 * 20 16 15 22 22 H 1.07999 * 120.00325 * 0.02562 * 21 20 16 23 23 C 1.37874 * 119.99720 * 179.97438 * 21 20 16 24 24 N 1.31511 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99743 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47229 * 90.00409 * 25 23 21 27 27 H 1.48507 * 109.47051 * 210.00132 * 25 23 21 28 28 H 1.48494 * 109.46982 * 329.99978 * 25 23 21 29 29 C 1.34918 * 111.61413 * 0.22599 * 14 12 11 30 30 O 1.21238 * 127.25444 * 179.76848 * 29 14 12 31 31 H 1.08996 * 109.47451 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46917 * 300.02040 * 1 2 3 33 33 H 1.08998 * 109.47182 * 60.01687 * 1 2 3 34 34 H 1.08999 * 109.46353 * 59.12870 * 4 2 1 35 35 H 1.09001 * 109.45877 * 299.15927 * 4 2 1 36 36 H 1.08997 * 109.46599 * 178.77242 * 6 5 4 37 37 H 1.08999 * 109.46514 * 298.73808 * 6 5 4 38 38 H 1.08996 * 109.47459 * 32.56986 * 8 7 6 39 39 H 1.08999 * 109.47770 * 152.57792 * 8 7 6 40 40 H 1.09006 * 109.46821 * 272.57857 * 8 7 6 41 41 H 1.09009 * 109.46709 * 60.00355 * 9 7 6 42 42 H 1.09001 * 109.47488 * 179.97438 * 9 7 6 43 43 H 1.08997 * 109.47399 * 300.00583 * 9 7 6 44 44 H 1.08999 * 109.45455 * 59.59280 * 10 2 1 45 45 H 1.08999 * 109.45816 * 299.64228 * 10 2 1 46 46 H 0.96998 * 126.78537 * 298.58102 * 11 5 4 47 47 H 1.09006 * 109.47037 * 330.02579 * 15 14 12 48 48 H 1.08998 * 109.47048 * 210.02210 * 15 14 12 49 49 H 1.08994 * 109.47250 * 294.99746 * 20 16 15 50 50 H 1.08994 * 109.47334 * 55.00299 * 20 16 15 51 51 H 0.97008 * 120.00048 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5652 -0.7415 1.2397 6 6 4.0881 -1.4395 -0.0109 7 6 3.5701 -0.7145 -1.2558 8 6 4.0736 0.7303 -1.2512 9 6 4.0782 -1.4280 -2.5102 10 6 2.0401 -0.7217 -1.2489 11 7 4.0970 0.6246 1.3264 12 6 4.8168 0.6815 2.4632 13 8 5.4000 1.6772 2.8448 14 7 4.8169 -0.4815 3.1261 15 6 5.5180 -0.7071 4.3926 16 6 4.5853 -0.3730 5.5585 17 1 4.2109 0.6443 5.4441 18 6 3.4536 -1.3144 5.5667 19 7 2.5817 -2.0421 5.5730 20 6 5.3544 -0.4885 6.8761 21 6 4.4724 -0.0415 8.0133 22 1 3.4640 0.2912 7.8161 23 6 4.9524 -0.0583 9.3057 24 7 6.1801 -0.4639 9.5459 25 14 3.8588 0.4951 10.7155 26 1 3.1053 -0.6701 11.2443 27 1 4.6982 1.0733 11.7955 28 1 2.9038 1.5221 10.2273 29 6 4.0958 -1.4215 2.4807 30 8 3.9112 -2.5693 2.8246 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5142 0.8898 33 1 -0.3633 0.5136 -0.8901 34 1 1.6645 -1.7455 1.2566 35 1 1.6896 -0.2004 2.1396 36 1 5.1779 -1.4223 -0.0076 37 1 3.7414 -2.4729 -0.0219 38 1 5.0562 0.7712 -0.7812 39 1 4.1459 1.0932 -2.2765 40 1 3.3774 1.3559 -0.6926 41 1 3.7189 -2.4572 -2.5135 42 1 3.7090 -0.9119 -3.3965 43 1 5.1681 -1.4237 -2.5144 44 1 1.6707 -0.2123 -2.1389 45 1 1.6819 -1.7512 -1.2451 46 1 3.9572 1.3437 0.6906 47 1 6.4001 -0.0683 4.4384 48 1 5.8221 -1.7518 4.4584 49 1 5.6524 -1.5250 7.0332 50 1 6.2421 0.1426 6.8351 51 1 6.5180 -0.4754 10.4552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229510168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:08 Heat of formation + Delta-G solvation = -30.350342 kcal Electronic energy + Delta-G solvation = -32521.412895 eV Core-core repulsion = 28421.250025 eV Total energy + Delta-G solvation = -4100.162870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.93219 -39.80679 -38.52778 -36.80639 -35.89564 -34.70300 -34.50579 -33.46121 -31.66049 -30.86453 -28.13332 -27.26812 -27.03390 -26.96195 -24.78901 -23.80636 -22.02176 -21.85998 -20.95092 -20.33244 -19.22912 -17.84283 -17.14151 -16.63841 -16.46450 -16.09056 -15.86038 -15.51106 -15.36689 -15.07948 -14.59599 -14.49491 -14.47056 -14.07012 -13.83181 -13.56377 -13.30030 -13.13195 -13.03159 -12.61304 -12.53598 -12.39983 -12.25992 -12.11678 -12.03840 -11.83940 -11.74742 -11.68891 -11.48594 -11.31368 -11.23679 -11.09103 -10.89793 -10.83449 -10.72188 -10.56692 -10.49702 -10.35044 -9.96615 -9.83435 -9.53271 -9.42879 -9.15981 -8.45373 -6.09522 -4.12730 1.65237 2.26656 3.04622 3.06638 3.30802 3.37119 3.40712 3.61478 3.65486 3.78621 4.06477 4.13593 4.38377 4.40842 4.42214 4.51757 4.69646 4.70803 4.79574 4.92248 5.05769 5.11317 5.17992 5.23784 5.27817 5.28746 5.33126 5.37498 5.39770 5.44029 5.45991 5.51127 5.55120 5.57072 5.59904 5.67317 5.74972 5.77822 5.86128 5.88482 5.93367 5.95258 6.05966 6.27449 6.42952 6.71971 7.10804 7.39705 7.42960 7.48526 7.84683 8.15683 8.21622 8.42276 8.90589 9.52537 11.01398 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.002843 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.304047 B = 9847.146430 C =10218.824515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.110 4.110 5 C 0.128 3.872 6 C -0.103 4.103 7 C -0.061 4.061 8 C -0.160 4.160 9 C -0.140 4.140 10 C -0.107 4.107 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.537 6.537 14 N -0.577 5.577 15 C 0.123 3.877 16 C -0.007 4.007 17 H 0.107 0.893 18 C 0.230 3.770 19 N -0.454 5.454 20 C 0.035 3.965 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.064 3.936 24 N -0.890 5.890 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.525 3.475 30 O -0.451 6.451 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.438 0.562 47 H 0.116 0.884 48 H 0.099 0.901 49 H 0.029 0.971 50 H 0.044 0.956 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 1.418 -27.610 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.148 4.148 5 C 0.037 3.963 6 C -0.141 4.141 7 C -0.061 4.061 8 C -0.217 4.217 9 C -0.197 4.197 10 C -0.144 4.144 11 N -0.398 5.398 12 C 0.399 3.601 13 O -0.410 6.410 14 N -0.323 5.323 15 C 0.002 3.998 16 C -0.030 4.030 17 H 0.125 0.875 18 C -0.087 4.087 19 N -0.131 5.131 20 C -0.004 4.004 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.529 5.529 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.197 1.197 29 C 0.310 3.690 30 O -0.319 6.319 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.290 0.710 47 H 0.134 0.866 48 H 0.118 0.882 49 H 0.048 0.952 50 H 0.062 0.938 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.513 0.176 -26.967 27.525 hybrid contribution -0.281 0.863 0.821 1.224 sum -5.793 1.039 -26.146 26.801 Atomic orbital electron populations 1.21803 0.94369 1.02256 1.02004 1.21204 0.96148 0.99682 0.93947 0.90633 1.21744 0.90444 1.03201 0.99418 1.21012 0.96626 0.83338 0.95363 1.21791 1.01284 0.99853 0.91200 1.20522 0.95549 0.95461 0.94572 1.22380 1.01480 0.95470 1.02360 1.21866 1.01238 1.00364 0.96249 1.21734 0.93843 1.01313 0.97536 1.46574 1.54392 1.13707 1.25077 1.16090 0.80089 0.83117 0.80836 1.91027 1.47715 1.31758 1.70463 1.46657 1.48907 1.12642 1.24129 1.22001 0.95345 1.04479 0.77965 1.19620 0.89295 0.95412 0.98662 0.87523 1.29011 0.94088 0.93707 0.91881 1.80994 1.11838 1.10379 1.09863 1.19156 0.95403 0.98962 0.86840 1.21074 0.99287 1.44580 0.91471 0.92548 1.24935 0.95053 0.95021 0.98867 1.69933 1.15287 1.46818 1.20827 0.86576 0.80496 0.78985 0.81932 1.20647 1.21024 1.19747 1.20681 0.77736 0.85747 0.84788 1.90841 1.55955 1.15234 1.69876 0.92360 0.92369 0.92384 0.89299 0.90595 0.90549 0.89294 0.91426 0.91903 0.91880 0.92363 0.92290 0.92369 0.91311 0.91239 0.70956 0.86567 0.88222 0.95239 0.93826 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.09 -0.61 2.39 -90.57 -0.22 -0.83 16 3 H 0.08 0.48 5.57 -51.93 -0.29 0.19 16 4 C -0.11 -1.03 4.27 -26.95 -0.12 -1.15 16 5 C 0.13 1.29 0.83 -133.11 -0.11 1.18 16 6 C -0.10 -0.81 3.78 -26.96 -0.10 -0.92 16 7 C -0.06 -0.35 0.77 -154.46 -0.12 -0.47 16 8 C -0.16 -0.87 7.05 37.16 0.26 -0.61 16 9 C -0.14 -0.71 8.33 37.16 0.31 -0.40 16 10 C -0.11 -0.60 4.00 -26.73 -0.11 -0.70 16 11 N -0.73 -7.35 4.30 -53.88 -0.23 -7.58 16 12 C 0.70 9.77 8.63 -87.83 -0.76 9.01 16 13 O -0.54 -9.14 17.49 5.33 0.09 -9.05 16 14 N -0.58 -8.44 2.49 -120.80 -0.30 -8.74 16 15 C 0.12 1.96 5.14 -4.04 -0.02 1.94 16 16 C -0.01 -0.14 2.42 -93.40 -0.23 -0.37 16 17 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 18 C 0.23 4.95 12.41 -20.76 -0.26 4.69 16 19 N -0.45 -10.43 18.54 42.14 0.78 -9.65 16 20 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 21 C -0.53 -14.24 8.60 -34.44 -0.30 -14.53 16 22 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 25 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 29 C 0.52 7.44 6.23 -10.71 -0.07 7.37 16 30 O -0.45 -7.72 17.13 5.59 0.10 -7.62 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.43 6.98 -51.93 -0.36 0.06 16 39 H 0.06 0.29 7.85 -51.93 -0.41 -0.12 16 40 H 0.06 0.33 3.72 -51.93 -0.19 0.13 16 41 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.06 0.26 8.11 -51.93 -0.42 -0.16 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.44 3.54 4.72 -40.82 -0.19 3.35 16 47 H 0.12 1.69 7.86 -51.93 -0.41 1.29 16 48 H 0.10 1.53 8.00 -51.93 -0.42 1.12 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -32.93 400.66 -7.65 -40.58 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.14 Total: -1.63 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.70 Total: 5.98 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.99 Total: -50.88 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.19 Total: -16.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.93 -7.65 -40.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229510168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.230 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds